Wall clock time and date at job start Mon Mar 30 2020 02:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46861 * 2 1 4 4 C 1.34229 * 116.99989 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99982 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00409 * 180.02562 * 4 3 2 7 7 F 1.39905 * 110.89885 * 307.58156 * 6 4 3 8 8 C 1.54908 * 110.99090 * 71.44656 * 6 4 3 9 9 N 1.47846 * 104.89238 * 155.22181 * 8 6 4 10 10 C 1.46900 * 111.00020 * 213.57993 * 9 8 6 11 11 C 1.50691 * 109.47462 * 290.12787 * 10 9 8 12 12 H 1.08003 * 119.99735 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00602 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99677 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00561 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47133 * 89.99898 * 15 13 11 17 17 H 1.48498 * 109.47198 * 210.00073 * 15 13 11 18 18 H 1.48500 * 109.47012 * 330.00068 * 15 13 11 19 19 C 1.47448 * 108.56553 * 335.84749 * 9 8 6 20 20 C 1.54321 * 107.23159 * 0.99350 * 19 9 8 21 21 H 1.09005 * 110.69934 * 263.71964 * 20 19 9 22 22 C 1.52996 * 110.70526 * 140.66673 * 20 19 9 23 23 C 1.53008 * 109.47332 * 66.45121 * 22 20 19 24 24 H 1.08994 * 109.47353 * 59.99923 * 1 2 3 25 25 H 1.08997 * 109.47217 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46932 * 299.99712 * 1 2 3 27 27 H 1.09000 * 109.46932 * 240.00288 * 2 1 3 28 28 H 1.08994 * 109.47353 * 120.00077 * 2 1 3 29 29 H 1.09002 * 110.37460 * 36.33581 * 8 6 4 30 30 H 1.08999 * 110.37548 * 274.10652 * 8 6 4 31 31 H 1.09009 * 109.46655 * 50.12373 * 10 9 8 32 32 H 1.09004 * 109.47038 * 170.12020 * 10 9 8 33 33 H 0.96997 * 119.99690 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.88737 * 120.39623 * 19 9 8 35 35 H 1.08997 * 109.88833 * 241.42257 * 19 9 8 36 36 H 1.08995 * 109.47430 * 186.44688 * 22 20 19 37 37 H 1.09004 * 109.47401 * 306.45270 * 22 20 19 38 38 H 1.08994 * 109.46878 * 59.99916 * 23 22 20 39 39 H 1.08998 * 109.47157 * 180.02562 * 23 22 20 40 40 H 1.09007 * 109.46423 * 299.99692 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 9 3.3744 3.7040 -1.0351 8 6 3.7082 3.6253 1.3716 9 7 4.7802 4.6399 1.4580 10 6 5.2360 4.8074 2.8444 11 6 4.1545 5.4786 3.6512 12 1 3.2220 5.7537 3.1809 13 6 4.3554 5.7416 4.9896 14 7 5.4912 5.4071 5.5622 15 14 3.0152 6.5743 5.9894 16 1 2.1255 5.5427 6.5806 17 1 3.6336 7.3760 7.0756 18 1 2.2208 7.4660 5.1067 19 6 5.8917 4.2241 0.5830 20 6 5.4718 2.9016 -0.0924 21 1 5.8731 2.0466 0.4518 22 6 5.9258 2.8721 -1.5531 23 6 7.4544 2.8352 -1.6115 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8063 2.8999 2.1792 30 1 2.7294 4.1034 1.4089 31 1 5.4569 3.8306 3.2748 32 1 6.1355 5.4229 2.8593 33 1 5.6327 5.5925 6.5037 34 1 6.0721 4.9865 -0.1749 35 1 6.7931 4.0705 1.1762 36 1 5.5222 1.9851 -2.0413 37 1 5.5642 3.7645 -2.0641 38 1 7.8160 1.9429 -1.1005 39 1 7.7778 2.8147 -2.6521 40 1 7.8580 3.7223 -1.1233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886871968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:55 Heat of formation + Delta-G solvation = -138.225933 kcal Electronic energy + Delta-G solvation = -22277.289833 eV Core-core repulsion = 18813.364392 eV Total energy + Delta-G solvation = -3463.925441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.68669 -40.55021 -38.32344 -36.64491 -34.27017 -32.59838 -31.94345 -30.30375 -28.13865 -26.54280 -24.46117 -23.34058 -22.75584 -21.30466 -20.41655 -19.60333 -18.06410 -17.06940 -16.76947 -16.36274 -15.68325 -15.21738 -14.68997 -14.52164 -14.12175 -14.01778 -13.82327 -13.36325 -13.03542 -12.97194 -12.77781 -12.45705 -12.17165 -12.03763 -11.93298 -11.92738 -11.71424 -11.49992 -11.13523 -10.93387 -10.71053 -10.65702 -10.60937 -10.51930 -10.30756 -10.18992 -9.85227 -9.23021 -8.48378 -7.43403 -6.06892 -4.08899 1.98161 2.41093 3.30400 3.36820 3.41754 4.13500 4.34782 4.41990 4.47025 4.72985 4.77753 4.81831 5.00087 5.08678 5.10136 5.29502 5.30215 5.45488 5.48442 5.55487 5.61751 5.65062 5.80917 5.85214 6.03660 6.07980 6.11364 6.22281 6.25886 6.32371 6.35408 6.48622 7.02460 7.18468 7.56611 7.72340 7.88439 8.05610 8.41725 8.98763 9.56060 11.03916 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.006066 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.625767 B = 4614.987127 C = 5986.634605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.345 6.345 4 C 0.463 3.537 5 O -0.491 6.491 6 C 0.120 3.880 7 F -0.172 7.172 8 C 0.051 3.949 9 N -0.519 5.519 10 C 0.186 3.814 11 C -0.510 4.510 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.046 3.954 20 C -0.112 4.112 21 H 0.103 0.897 22 C -0.112 4.112 23 C -0.149 4.149 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.098 0.902 31 H -0.004 1.004 32 H 0.036 0.964 33 H 0.262 0.738 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 -9.413 -12.892 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 O -0.261 6.261 4 C 0.303 3.697 5 O -0.378 6.378 6 C 0.100 3.900 7 F -0.152 7.152 8 C -0.077 4.077 9 N -0.243 5.243 10 C 0.061 3.939 11 C -0.549 4.549 12 H 0.083 0.917 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.082 4.082 20 C -0.132 4.132 21 H 0.121 0.879 22 C -0.150 4.150 23 C -0.206 4.206 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.013 0.987 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.824 -9.202 -12.885 16.289 hybrid contribution -0.393 -0.535 0.932 1.144 sum -4.218 -9.738 -11.953 15.984 Atomic orbital electron populations 1.21807 0.92387 1.02898 1.03875 1.23101 0.95676 0.80103 1.02640 1.86591 1.23804 1.32505 1.83190 1.23808 0.81122 0.92192 0.72558 1.90658 1.60473 1.42188 1.44445 1.22047 0.94309 0.83964 0.89697 1.92899 1.86855 1.76048 1.59375 1.23454 0.99705 0.94114 0.90453 1.63819 1.07154 1.40812 1.12554 1.20028 0.96819 0.95978 0.81037 1.21145 1.01498 1.38659 0.93602 0.91736 1.24990 0.95820 0.95919 0.97811 1.69957 1.23982 1.47781 1.12058 0.86482 0.81676 0.79517 0.79696 1.20725 1.21221 1.19648 1.22987 0.95233 0.93288 0.96671 1.23034 0.89746 1.01418 0.98989 0.87921 1.21428 0.96724 1.02484 0.94334 1.21739 0.95120 1.02266 1.01474 0.91377 0.90241 0.91129 0.91219 0.90968 0.91717 0.88345 0.98661 0.94587 0.92849 0.90483 0.92017 0.92105 0.90857 0.92696 0.92730 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 37.16 0.38 -0.92 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.34 -5.16 10.22 -39.25 -0.40 -5.56 16 4 C 0.46 7.61 7.05 36.01 0.25 7.86 16 5 O -0.49 -8.51 15.46 -18.75 -0.29 -8.80 16 6 C 0.12 2.04 1.30 -89.48 -0.12 1.93 16 7 F -0.17 -2.96 15.96 2.25 0.04 -2.93 16 8 C 0.05 1.01 5.43 -2.30 -0.01 0.99 16 9 N -0.52 -11.15 5.15 -232.68 -1.20 -12.35 16 10 C 0.19 4.76 4.34 -4.98 -0.02 4.74 16 11 C -0.51 -14.17 8.82 -34.45 -0.30 -14.47 16 12 H 0.06 1.78 7.78 -52.48 -0.41 1.37 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 15 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.05 0.82 5.61 -2.83 -0.02 0.81 16 20 C -0.11 -1.78 2.10 -88.64 -0.19 -1.97 16 21 H 0.10 1.68 7.36 -51.93 -0.38 1.30 16 22 C -0.11 -1.49 4.98 -26.73 -0.13 -1.63 16 23 C -0.15 -1.70 9.76 37.16 0.36 -1.34 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 29 H 0.06 1.32 7.50 -51.93 -0.39 0.93 16 30 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 31 H 0.00 -0.12 7.83 -51.92 -0.41 -0.52 16 32 H 0.04 0.98 8.01 -51.93 -0.42 0.56 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.08 1.28 7.76 -51.93 -0.40 0.88 16 35 H 0.06 1.09 7.54 -51.93 -0.39 0.70 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.98 7.57 -51.93 -0.39 0.59 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.69 7.49 -51.93 -0.39 0.30 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -30.36 332.64 -7.30 -37.66 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.52 Total: -2.23 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 0.34 Total: -1.63 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.46 Total: -37.97 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.69 Total: -14.36 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.36 -7.30 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886871968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.567 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds