Wall clock time and date at job start Mon Mar 30 2020 02:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46861 * 2 1 4 4 C 1.34229 * 116.99989 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99982 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00409 * 180.02562 * 4 3 2 7 7 F 1.39905 * 110.89885 * 307.58156 * 6 4 3 8 8 C 1.54908 * 110.99090 * 71.44656 * 6 4 3 9 9 N 1.47846 * 104.89238 * 155.22181 * 8 6 4 10 10 C 1.46900 * 111.00020 * 213.57993 * 9 8 6 11 11 C 1.50691 * 109.47462 * 290.12787 * 10 9 8 12 12 H 1.08003 * 119.99735 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00602 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99677 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00561 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47133 * 89.99898 * 15 13 11 17 17 H 1.48498 * 109.47198 * 210.00073 * 15 13 11 18 18 H 1.48500 * 109.47012 * 330.00068 * 15 13 11 19 19 C 1.47448 * 108.56553 * 335.84749 * 9 8 6 20 20 C 1.54321 * 107.23159 * 0.99350 * 19 9 8 21 21 H 1.09005 * 110.69934 * 263.71964 * 20 19 9 22 22 C 1.52996 * 110.70526 * 140.66673 * 20 19 9 23 23 C 1.53008 * 109.47332 * 66.45121 * 22 20 19 24 24 H 1.08994 * 109.47353 * 59.99923 * 1 2 3 25 25 H 1.08997 * 109.47217 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46932 * 299.99712 * 1 2 3 27 27 H 1.09000 * 109.46932 * 240.00288 * 2 1 3 28 28 H 1.08994 * 109.47353 * 120.00077 * 2 1 3 29 29 H 1.09002 * 110.37460 * 36.33581 * 8 6 4 30 30 H 1.08999 * 110.37548 * 274.10652 * 8 6 4 31 31 H 1.09009 * 109.46655 * 50.12373 * 10 9 8 32 32 H 1.09004 * 109.47038 * 170.12020 * 10 9 8 33 33 H 0.96997 * 119.99690 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.88737 * 120.39623 * 19 9 8 35 35 H 1.08997 * 109.88833 * 241.42257 * 19 9 8 36 36 H 1.08995 * 109.47430 * 186.44688 * 22 20 19 37 37 H 1.09004 * 109.47401 * 306.45270 * 22 20 19 38 38 H 1.08994 * 109.46878 * 59.99916 * 23 22 20 39 39 H 1.08998 * 109.47157 * 180.02562 * 23 22 20 40 40 H 1.09007 * 109.46423 * 299.99692 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 9 3.3744 3.7040 -1.0351 8 6 3.7082 3.6253 1.3716 9 7 4.7802 4.6399 1.4580 10 6 5.2360 4.8074 2.8444 11 6 4.1545 5.4786 3.6512 12 1 3.2220 5.7537 3.1809 13 6 4.3554 5.7416 4.9896 14 7 5.4912 5.4071 5.5622 15 14 3.0152 6.5743 5.9894 16 1 2.1255 5.5427 6.5806 17 1 3.6336 7.3760 7.0756 18 1 2.2208 7.4660 5.1067 19 6 5.8917 4.2241 0.5830 20 6 5.4718 2.9016 -0.0924 21 1 5.8731 2.0466 0.4518 22 6 5.9258 2.8721 -1.5531 23 6 7.4544 2.8352 -1.6115 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8063 2.8999 2.1792 30 1 2.7294 4.1034 1.4089 31 1 5.4569 3.8306 3.2748 32 1 6.1355 5.4229 2.8593 33 1 5.6327 5.5925 6.5037 34 1 6.0721 4.9865 -0.1749 35 1 6.7931 4.0705 1.1762 36 1 5.5222 1.9851 -2.0413 37 1 5.5642 3.7645 -2.0641 38 1 7.8160 1.9429 -1.1005 39 1 7.7778 2.8147 -2.6521 40 1 7.8580 3.7223 -1.1233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886871968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:54 Heat of formation + Delta-G solvation = -156.423663 kcal Electronic energy + Delta-G solvation = -22278.078946 eV Core-core repulsion = 18813.364392 eV Total energy + Delta-G solvation = -3464.714554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.08328 -41.81934 -39.79891 -37.91270 -35.78553 -34.46640 -32.90968 -31.75671 -29.65243 -28.29027 -25.78778 -24.93539 -23.78070 -22.76870 -21.90776 -20.95497 -19.38857 -18.60227 -18.28331 -17.87734 -17.06471 -16.58473 -16.56230 -15.89802 -15.51005 -15.26721 -15.14860 -14.82939 -14.48109 -14.20362 -13.90304 -13.83244 -13.70986 -13.43334 -13.17361 -13.05509 -12.97497 -12.80988 -12.61187 -12.57921 -12.50588 -12.14188 -11.91758 -11.66305 -11.65321 -11.56842 -11.52980 -11.22627 -10.63378 -9.20450 -8.22318 -6.32669 0.66725 1.22155 1.41702 1.42888 1.54859 2.39933 2.77981 2.99863 3.07977 3.12181 3.32648 3.54303 3.80658 3.94999 3.99604 4.08972 4.19703 4.27468 4.39777 4.44773 4.53087 4.66204 4.71737 4.77665 4.80440 4.88656 4.98959 5.02333 5.06230 5.09582 5.15336 5.23710 5.28339 5.40154 5.62400 5.95204 6.07727 6.32118 6.43289 6.81785 7.37393 8.88700 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.006066 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.625767 B = 4614.987127 C = 5986.634605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.352 6.352 4 C 0.467 3.533 5 O -0.502 6.502 6 C 0.126 3.874 7 F -0.171 7.171 8 C 0.051 3.949 9 N -0.530 5.530 10 C 0.203 3.797 11 C -0.528 4.528 12 H 0.062 0.938 13 C 0.005 3.995 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.265 1.265 19 C 0.046 3.954 20 C -0.105 4.105 21 H 0.097 0.903 22 C -0.106 4.106 23 C -0.146 4.146 24 H 0.071 0.929 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.094 0.906 31 H -0.029 1.029 32 H 0.014 0.986 33 H 0.265 0.735 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -9.791 -13.892 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.268 6.268 4 C 0.307 3.693 5 O -0.390 6.390 6 C 0.106 3.894 7 F -0.151 7.151 8 C -0.077 4.077 9 N -0.254 5.254 10 C 0.077 3.923 11 C -0.566 4.566 12 H 0.081 0.919 13 C -0.194 4.194 14 N -0.573 5.573 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.189 1.189 19 C -0.082 4.082 20 C -0.124 4.124 21 H 0.115 0.885 22 C -0.144 4.144 23 C -0.203 4.203 24 H 0.090 0.910 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.112 0.888 31 H -0.012 1.012 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.907 -9.588 -13.908 17.591 hybrid contribution -0.084 -0.463 1.209 1.297 sum -4.991 -10.051 -12.700 16.947 Atomic orbital electron populations 1.21851 0.90066 1.04708 1.03774 1.23500 0.97503 0.78334 1.03158 1.86582 1.22707 1.34899 1.82643 1.23531 0.81732 0.91547 0.72461 1.90649 1.60874 1.42305 1.45126 1.21887 0.95202 0.84264 0.88080 1.92897 1.86937 1.76164 1.59110 1.23349 0.98843 0.93600 0.91958 1.63698 1.08760 1.42369 1.10554 1.19665 0.95541 0.93944 0.83172 1.21446 1.01876 1.38933 0.94348 0.91949 1.25879 0.98125 0.96405 0.98956 1.70073 1.25909 1.48751 1.12533 0.85402 0.78760 0.78591 0.78027 1.19799 1.20664 1.18916 1.23052 0.93919 0.94875 0.96342 1.22996 0.88861 0.99888 1.00686 0.88468 1.21419 0.98120 1.02776 0.92072 1.21732 0.93507 1.02227 1.02872 0.91034 0.87436 0.91643 0.90207 0.91000 0.93046 0.88792 1.01151 0.96799 0.92587 0.88965 0.92347 0.91754 0.90546 0.92710 0.90672 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.29 71.98 0.74 -1.46 16 2 C 0.05 1.02 6.19 71.98 0.45 1.46 16 3 O -0.35 -10.23 10.22 -51.40 -0.53 -10.76 16 4 C 0.47 15.04 7.05 71.24 0.50 15.54 16 5 O -0.50 -17.01 15.46 21.97 0.34 -16.67 16 6 C 0.13 4.23 1.30 -10.05 -0.01 4.22 16 7 F -0.17 -5.71 15.96 44.97 0.72 -5.00 16 8 C 0.05 2.04 5.43 86.77 0.47 2.51 16 9 N -0.53 -23.16 5.15 -890.07 -4.58 -27.74 16 10 C 0.20 10.72 4.34 85.55 0.37 11.10 16 11 C -0.53 -29.82 8.82 25.60 0.23 -29.59 16 12 H 0.06 3.47 7.78 -2.91 -0.02 3.45 16 13 C 0.00 0.27 5.46 84.65 0.46 0.73 16 14 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 15 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 C 0.05 1.62 5.61 86.65 0.49 2.10 16 20 C -0.10 -3.26 2.10 -9.51 -0.02 -3.28 16 21 H 0.10 3.16 7.36 -2.38 -0.02 3.14 16 22 C -0.11 -2.65 4.98 30.60 0.15 -2.50 16 23 C -0.15 -3.05 9.76 71.98 0.70 -2.35 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.54 8.13 -2.39 -0.02 1.52 16 28 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 29 H 0.05 2.17 7.50 -2.39 -0.02 2.16 16 30 H 0.09 3.77 8.14 -2.39 -0.02 3.75 16 31 H -0.03 -1.66 7.83 -2.38 -0.02 -1.67 16 32 H 0.01 0.79 8.01 -2.39 -0.02 0.77 16 33 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 34 H 0.09 2.99 7.76 -2.39 -0.02 2.97 16 35 H 0.06 2.10 7.54 -2.39 -0.02 2.09 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.88 7.57 -2.39 -0.02 1.86 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.26 7.49 -2.38 -0.02 1.24 16 Total: -1.00 -64.83 332.64 3.79 -61.03 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.01 Total: 9.87 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 4.53 Total: -1.52 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -4.30 Total: -83.02 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.19 Total: -27.42 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.72 Total: -5.00 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -64.83 3.79 -61.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886871968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.391 kcal (2) G-P(sol) polarization free energy of solvation -64.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds