Wall clock time and date at job start Mon Mar 30 2020 01:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99768 * 2 1 4 4 C 1.53001 * 109.47208 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46898 * 240.00262 * 3 2 1 6 6 C 1.52997 * 109.47369 * 119.99713 * 3 2 1 7 7 C 1.50698 * 109.47025 * 179.97438 * 6 3 2 8 8 O 1.21275 * 120.00271 * 357.68643 * 7 6 3 9 9 N 1.34780 * 120.00059 * 177.68727 * 7 6 3 10 10 C 1.37142 * 119.99656 * 5.76066 * 9 7 6 11 11 H 1.07998 * 120.00125 * 55.48716 * 10 9 7 12 12 C 1.38894 * 119.99676 * 235.48582 * 10 9 7 13 13 N 1.31425 * 120.00102 * 9.48532 * 12 10 9 14 14 Si 1.86795 * 120.00027 * 189.48546 * 12 10 9 15 15 H 1.48500 * 109.47111 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47323 * 120.00032 * 14 12 10 17 17 H 1.48504 * 109.47259 * 240.00090 * 14 12 10 18 18 C 1.39786 * 120.00290 * 185.75604 * 9 7 6 19 19 C 1.38955 * 120.07906 * 175.30135 * 18 9 7 20 20 C 1.38083 * 119.92453 * 179.97438 * 19 18 9 21 21 C 1.38311 * 120.07447 * 0.02562 * 20 19 18 22 22 C 1.38307 * 120.15895 * 359.97438 * 21 20 19 23 23 C 1.38085 * 120.07666 * 0.02562 * 22 21 20 24 24 H 1.07997 * 119.99387 * 180.02562 * 1 2 3 25 25 H 1.07993 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00642 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47679 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.47068 * 300.00653 * 4 3 2 29 29 H 1.09000 * 109.46882 * 60.00008 * 4 3 2 30 30 H 1.09002 * 109.46677 * 299.99437 * 5 3 2 31 31 H 1.08993 * 109.47976 * 59.99695 * 5 3 2 32 32 H 1.09001 * 109.47021 * 179.97438 * 5 3 2 33 33 H 1.09002 * 109.47232 * 59.99934 * 6 3 2 34 34 H 1.09000 * 109.47018 * 300.00174 * 6 3 2 35 35 H 0.96993 * 119.99945 * 184.98459 * 13 12 10 36 36 H 1.08005 * 120.03994 * 359.70410 * 19 18 9 37 37 H 1.07996 * 119.96482 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.91913 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.96348 * 180.02562 * 22 21 20 40 40 H 1.07994 * 120.03914 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9430 1.3862 -1.2493 6 6 2.9430 1.3863 1.2492 7 6 3.6969 2.6912 1.2488 8 8 3.5778 3.4601 0.3186 9 7 4.5036 3.0037 2.2823 10 6 4.7311 2.0866 3.2763 11 1 5.1111 1.1062 3.0297 12 6 4.4728 2.4187 4.6000 13 7 3.8395 3.5342 4.8861 14 14 5.0256 1.2798 5.9735 15 1 5.7114 0.0984 5.3912 16 1 5.9618 2.0040 6.8704 17 1 3.8425 0.8314 6.7511 18 6 5.1084 4.2626 2.3411 19 6 5.8611 4.6224 3.4523 20 6 6.4576 5.8666 3.5068 21 6 6.3061 6.7544 2.4572 22 6 5.5575 6.3997 1.3496 23 6 4.9582 5.1572 1.2884 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.6141 3.4121 -0.0002 28 1 0.4428 2.4100 -0.8908 29 1 0.4422 2.4105 0.8891 30 1 3.6514 0.5577 -1.2492 31 1 2.3165 1.3284 -2.1393 32 1 3.4876 2.3304 -1.2495 33 1 3.6514 0.5579 1.2493 34 1 2.3163 1.3286 2.1392 35 1 3.7228 3.8020 5.8109 36 1 5.9760 3.9314 4.2744 37 1 7.0424 6.1471 4.3703 38 1 6.7733 7.7271 2.5026 39 1 5.4416 7.0953 0.5316 40 1 4.3736 4.8810 0.4234 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888564117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:18 Heat of formation + Delta-G solvation = 28.555391 kcal Electronic energy + Delta-G solvation = -21675.460873 eV Core-core repulsion = 18649.536838 eV Total energy + Delta-G solvation = -3025.924035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97363 -37.98117 -36.34928 -34.97916 -31.98144 -30.96247 -29.60217 -29.16042 -26.97606 -26.78626 -25.13481 -22.46818 -21.56445 -20.92413 -19.33221 -17.99935 -17.36794 -16.35524 -15.56884 -15.18070 -14.99997 -14.50935 -14.49658 -13.87329 -13.61029 -13.15349 -12.97168 -12.78841 -12.45694 -12.17560 -12.04461 -11.60357 -11.55889 -11.33146 -11.22155 -11.07649 -10.86829 -10.61814 -10.52871 -10.51521 -10.24413 -10.16504 -9.99257 -9.18220 -9.06511 -8.72867 -7.95533 -7.77832 -6.87724 -6.30767 -4.54545 2.43430 2.56688 2.57828 3.01263 3.11622 3.14611 3.75932 3.95724 4.52463 4.74239 5.14172 5.19609 5.25677 5.51240 5.64940 5.75585 5.87441 5.92836 6.06566 6.12683 6.17087 6.18650 6.26162 6.35279 6.48020 6.52036 6.63897 6.72583 6.75656 6.83090 6.88566 6.90734 7.07168 7.13822 7.21824 7.25368 7.52622 7.64700 7.70727 7.81707 8.07241 8.44892 8.85242 9.26996 9.64602 10.46786 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.007856 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.327960 B = 3563.518342 C = 5050.141918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 C -0.024 4.024 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.103 4.103 7 C 0.498 3.502 8 O -0.559 6.559 9 N -0.384 5.384 10 C -0.366 4.366 11 H 0.093 0.907 12 C 0.056 3.944 13 N -0.841 5.841 14 Si 0.912 3.088 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.184 3.816 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.175 4.175 22 C -0.121 4.121 23 C -0.193 4.193 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.274 0.726 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 -3.217 -4.392 5.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.151 4.151 3 C -0.024 4.024 4 C -0.207 4.207 5 C -0.204 4.204 6 C -0.142 4.142 7 C 0.291 3.709 8 O -0.444 6.444 9 N -0.091 5.091 10 C -0.494 4.494 11 H 0.110 0.890 12 C -0.154 4.154 13 N -0.473 5.473 14 Si 0.737 3.263 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.203 1.203 18 C 0.087 3.913 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.194 4.194 22 C -0.140 4.140 23 C -0.213 4.213 24 H 0.108 0.892 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.527 -2.857 -4.657 5.673 hybrid contribution 0.232 -0.537 1.256 1.386 sum -1.295 -3.394 -3.401 4.976 Atomic orbital electron populations 1.23918 0.96232 1.01603 1.02830 1.23018 0.95863 0.97951 0.98252 1.19443 0.95088 0.92518 0.95379 1.22113 0.98409 1.00141 1.00030 1.22061 0.99059 1.03879 0.95401 1.21355 0.98491 0.96163 0.98228 1.20861 0.78992 0.88487 0.82519 1.90037 1.65967 1.51490 1.36953 1.41043 1.36967 1.11049 1.20070 1.19350 1.47442 0.96772 0.85822 0.88956 1.25606 0.93814 0.96631 0.99324 1.70039 1.34458 1.22301 1.20470 0.86108 0.78796 0.80571 0.80838 1.18804 1.20113 1.20273 1.18308 0.92446 0.86833 0.93694 1.21035 0.97519 0.96560 0.97701 1.20765 1.01006 0.94553 0.97985 1.20777 1.03673 0.99117 0.95844 1.20869 0.99019 0.96585 0.97522 1.22824 1.03157 0.93526 1.01764 0.89244 0.87953 0.87862 0.89465 0.93624 0.93482 0.93881 0.93868 0.88889 0.89835 0.88986 0.91590 0.85183 0.87893 0.88290 0.87817 0.80703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.75 13.70 29.01 0.40 -2.35 16 2 C -0.13 -1.90 8.76 -36.03 -0.32 -2.21 16 3 C -0.02 -0.39 0.74 -155.66 -0.11 -0.51 16 4 C -0.15 -2.53 6.83 37.16 0.25 -2.27 16 5 C -0.15 -2.36 8.16 37.16 0.30 -2.05 16 6 C -0.10 -1.94 3.57 -27.89 -0.10 -2.04 16 7 C 0.50 11.16 6.98 -10.98 -0.08 11.08 16 8 O -0.56 -12.59 7.74 5.56 0.04 -12.54 16 9 N -0.38 -9.41 2.62 -58.98 -0.15 -9.56 16 10 C -0.37 -8.85 7.64 -14.93 -0.11 -8.97 16 11 H 0.09 2.13 7.76 -52.49 -0.41 1.73 16 12 C 0.06 1.34 3.48 -17.48 -0.06 1.28 16 13 N -0.84 -21.59 11.40 55.49 0.63 -20.95 16 14 Si 0.91 18.47 29.57 -169.99 -5.03 13.45 16 15 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 18 C 0.18 4.57 6.05 -83.70 -0.51 4.07 16 19 C -0.11 -2.57 7.87 -39.37 -0.31 -2.88 16 20 C -0.12 -2.63 10.04 -39.61 -0.40 -3.03 16 21 C -0.17 -3.49 10.04 -39.53 -0.40 -3.89 16 22 C -0.12 -2.51 10.04 -39.61 -0.40 -2.91 16 23 C -0.19 -4.51 9.06 -39.37 -0.36 -4.87 16 24 H 0.09 1.01 8.06 -52.49 -0.42 0.58 16 25 H 0.10 1.35 5.69 -52.49 -0.30 1.05 16 26 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.09 1.69 5.60 -51.93 -0.29 1.40 16 28 H 0.04 0.68 7.50 -51.93 -0.39 0.29 16 29 H 0.05 0.78 7.50 -51.93 -0.39 0.39 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.70 5.43 -51.93 -0.28 1.42 16 33 H 0.08 1.49 8.01 -51.93 -0.42 1.08 16 34 H 0.09 1.84 8.11 -51.93 -0.42 1.42 16 35 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 36 H 0.13 3.23 5.15 -52.48 -0.27 2.96 16 37 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.18 4.14 4.50 -56.38 -0.25 3.89 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -26.18 315.73 -7.45 -33.63 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.51 Total: 12.77 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -2.19 Total: -21.55 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.48 Total: -30.52 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.04 Total: -12.54 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.18 -7.45 -33.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.186 kcal (2) G-P(sol) polarization free energy of solvation -26.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds