Wall clock time and date at job start Mon Mar 30 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47326 * 2 1 4 4 H 1.09000 * 109.86322 * 181.07372 * 3 2 1 5 5 C 1.50780 * 109.80922 * 60.19863 * 3 2 1 6 6 C 1.38442 * 131.21078 * 60.45577 * 5 3 2 7 7 C 1.38139 * 120.10993 * 179.97438 * 6 5 3 8 8 C 1.38259 * 119.96135 * 359.97438 * 7 6 5 9 9 C 1.38152 * 119.96023 * 359.97438 * 8 7 6 10 10 C 1.38073 * 108.85896 * 240.45186 * 5 3 2 11 11 C 1.50775 * 108.86408 * 359.97438 * 10 5 3 12 12 N 1.46632 * 109.81436 * 301.94950 * 3 2 1 13 13 C 1.34783 * 126.56165 * 299.29032 * 12 3 2 14 14 O 1.21277 * 119.99462 * 354.93149 * 13 12 3 15 15 C 1.50702 * 120.00073 * 174.94359 * 13 12 3 16 16 C 1.53002 * 109.46903 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46848 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99894 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99838 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99947 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47283 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47196 * 120.00378 * 21 19 17 24 24 H 1.48507 * 109.46956 * 240.00118 * 21 19 17 25 25 H 1.08993 * 109.47487 * 64.90349 * 1 2 3 26 26 H 1.09006 * 109.47413 * 184.90639 * 1 2 3 27 27 H 1.09001 * 109.47153 * 304.89843 * 1 2 3 28 28 H 1.09002 * 109.47226 * 239.99537 * 2 1 3 29 29 H 1.09000 * 109.47354 * 119.99870 * 2 1 3 30 30 H 1.08007 * 119.94242 * 0.02562 * 6 5 3 31 31 H 1.07997 * 120.02319 * 179.97438 * 7 6 5 32 32 H 1.07999 * 120.02296 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.94580 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.81959 * 240.45274 * 11 10 5 35 35 H 1.09000 * 109.81188 * 119.54205 * 11 10 5 36 36 H 1.09009 * 109.46696 * 299.99261 * 15 13 12 37 37 H 1.08992 * 109.47180 * 59.98997 * 15 13 12 38 38 H 1.08997 * 109.46755 * 299.99342 * 16 15 13 39 39 H 1.08997 * 109.46880 * 59.99689 * 16 15 13 40 40 H 0.97007 * 119.99972 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1298 1.4499 -0.0192 5 6 1.5456 2.1592 1.2310 6 6 1.7452 1.9040 2.5769 7 6 1.1739 2.7246 3.5301 8 6 0.4018 3.8030 3.1395 9 6 0.2031 4.0589 1.7965 10 6 0.7738 3.2356 0.8409 11 6 0.7237 3.2792 -0.6654 12 7 1.5174 2.1544 -1.1705 13 6 1.7310 1.8391 -2.4634 14 8 2.4895 0.9373 -2.7503 15 6 1.0274 2.6071 -3.5525 16 6 1.4425 2.0532 -4.9170 17 6 0.7384 2.8209 -6.0061 18 1 0.0628 3.6239 -5.7505 19 6 0.9576 2.4989 -7.3286 20 7 1.7807 1.5216 -7.6397 21 14 0.0854 3.4510 -8.6786 22 1 -0.7806 4.4923 -8.0697 23 1 1.0923 4.0963 -9.5589 24 1 -0.7493 2.5205 -9.4804 25 1 -0.3634 0.4358 -0.9306 26 1 -0.3634 -1.0239 0.0879 27 1 -0.3633 0.5880 0.8429 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.3494 1.0624 2.8823 31 1 1.3302 2.5240 4.5797 32 1 -0.0457 4.4450 3.8838 33 1 -0.4004 4.9011 1.4917 34 1 1.1449 4.2190 -1.0221 35 1 -0.3081 3.1837 -1.0036 36 1 -0.0510 2.5043 -3.4311 37 1 1.3013 3.6602 -3.4895 38 1 2.5208 2.1564 -5.0382 39 1 1.1689 1.0001 -4.9801 40 1 1.9346 1.2948 -8.5703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890615554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:22 Heat of formation + Delta-G solvation = -15.322806 kcal Electronic energy + Delta-G solvation = -20772.202066 eV Core-core repulsion = 17744.375329 eV Total energy + Delta-G solvation = -3027.826737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99276 -38.68964 -36.32322 -33.68187 -33.25588 -31.34161 -30.84898 -30.58008 -27.47378 -26.18138 -24.77122 -23.08692 -21.71421 -21.57702 -20.15465 -18.62954 -16.93414 -16.39103 -16.22983 -16.03787 -15.68708 -14.62984 -14.49425 -14.44497 -14.29008 -13.85390 -13.52723 -13.31758 -12.95906 -12.53957 -12.48064 -12.18877 -12.15645 -11.79851 -11.38946 -11.24732 -11.08477 -11.02078 -10.94261 -10.64724 -10.57934 -9.96578 -9.66711 -9.19907 -9.10378 -9.04143 -9.01933 -8.33083 -8.22534 -5.96092 -4.00452 1.09681 1.14978 3.13187 3.18248 3.32796 3.40047 3.43331 3.50764 4.13059 4.35198 4.47494 4.76622 4.81360 4.99319 5.18714 5.23127 5.27877 5.34590 5.38095 5.39038 5.41805 5.48608 5.72465 5.80321 5.82313 5.85920 6.00275 6.12443 6.16452 6.21621 6.23090 6.25985 6.32163 6.41802 6.61213 6.73982 6.87908 7.74560 7.82068 7.85529 8.06759 8.37838 8.69643 9.07896 9.63163 11.14885 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031755 B = 0.003876 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.539537 B = 7221.996897 C = 7761.256010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.178 3.822 4 H 0.082 0.918 5 C -0.089 4.089 6 C -0.096 4.096 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.097 4.097 10 C -0.102 4.102 11 C 0.147 3.853 12 N -0.621 5.621 13 C 0.536 3.464 14 O -0.525 6.525 15 C -0.124 4.124 16 C 0.037 3.963 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 3.407 23.362 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.168 4.168 3 C 0.074 3.926 4 H 0.100 0.900 5 C -0.090 4.090 6 C -0.115 4.115 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.115 4.115 10 C -0.102 4.102 11 C 0.023 3.977 12 N -0.358 5.358 13 C 0.327 3.673 14 O -0.399 6.399 15 C -0.164 4.164 16 C -0.001 4.001 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.889 2.780 22.893 23.241 hybrid contribution -0.472 0.565 -0.650 0.983 sum -3.361 3.345 22.242 22.742 Atomic orbital electron populations 1.21679 0.95411 1.01186 1.01881 1.21803 0.96825 0.95090 1.03054 1.19837 0.98399 0.91845 0.82498 0.89994 1.20323 0.98260 0.96341 0.94078 1.20476 1.00267 0.99907 0.90836 1.21042 0.97982 0.95364 0.99225 1.21045 0.99238 0.97958 0.95492 1.20490 0.99859 0.99151 0.92014 1.20384 0.98471 0.96295 0.95072 1.20242 0.97037 0.90975 0.89396 1.48304 1.52748 1.29739 1.05051 1.21243 0.81384 0.84085 0.80567 1.90676 1.36284 1.31541 1.81368 1.21882 0.99780 0.99522 0.95176 1.18923 0.97430 0.96687 0.87049 1.21241 1.26547 1.17553 0.91090 0.92543 1.25022 0.95308 0.95220 0.98833 1.70010 1.35758 1.29039 1.17982 0.86538 0.79487 0.79890 0.82063 1.19738 1.21013 1.21018 0.92571 0.92972 0.93019 0.90022 0.91439 0.85936 0.85726 0.85692 0.85718 0.89949 0.89978 0.90164 0.90239 0.95763 0.95757 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.51 37.15 0.35 -1.51 16 2 C -0.13 -1.74 5.62 -26.74 -0.15 -1.89 16 3 C 0.18 2.47 3.23 -68.97 -0.22 2.25 16 4 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 5 C -0.09 -1.04 4.18 -104.57 -0.44 -1.48 16 6 C -0.10 -0.93 10.04 -39.54 -0.40 -1.33 16 7 C -0.12 -0.98 10.05 -39.61 -0.40 -1.37 16 8 C -0.12 -0.97 10.05 -39.61 -0.40 -1.37 16 9 C -0.10 -0.89 10.05 -39.54 -0.40 -1.29 16 10 C -0.10 -1.14 6.22 -104.57 -0.65 -1.79 16 11 C 0.15 1.82 6.55 -5.08 -0.03 1.78 16 12 N -0.62 -9.70 2.34 -168.49 -0.39 -10.09 16 13 C 0.54 10.64 7.62 -10.98 -0.08 10.55 16 14 O -0.52 -12.44 15.27 5.56 0.08 -12.35 16 15 C -0.12 -2.55 4.90 -27.88 -0.14 -2.69 16 16 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 17 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 18 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H 0.06 0.82 7.73 -51.93 -0.40 0.42 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.62 7.07 -51.93 -0.37 0.26 16 28 H 0.08 1.33 7.08 -51.93 -0.37 0.96 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -33.37 331.95 -9.24 -42.61 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.17 Total: -2.19 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.48 Total: -12.92 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.34 Total: -36.81 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.35 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.37 -9.24 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890615554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.292 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds