Wall clock time and date at job start Mon Mar 30 2020 02:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47326 * 2 1 4 4 H 1.09000 * 109.86322 * 181.07372 * 3 2 1 5 5 C 1.50780 * 109.80922 * 60.19863 * 3 2 1 6 6 C 1.38442 * 131.21078 * 60.45577 * 5 3 2 7 7 C 1.38139 * 120.10993 * 179.97438 * 6 5 3 8 8 C 1.38259 * 119.96135 * 359.97438 * 7 6 5 9 9 C 1.38152 * 119.96023 * 359.97438 * 8 7 6 10 10 C 1.38073 * 108.85896 * 240.45186 * 5 3 2 11 11 C 1.50775 * 108.86408 * 359.97438 * 10 5 3 12 12 N 1.46632 * 109.81436 * 301.94950 * 3 2 1 13 13 C 1.34783 * 126.56165 * 299.29032 * 12 3 2 14 14 O 1.21277 * 119.99462 * 354.93149 * 13 12 3 15 15 C 1.50702 * 120.00073 * 174.94359 * 13 12 3 16 16 C 1.53002 * 109.46903 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46848 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99894 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99838 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99947 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99897 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47283 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47196 * 120.00378 * 21 19 17 24 24 H 1.48507 * 109.46956 * 240.00118 * 21 19 17 25 25 H 1.08993 * 109.47487 * 64.90349 * 1 2 3 26 26 H 1.09006 * 109.47413 * 184.90639 * 1 2 3 27 27 H 1.09001 * 109.47153 * 304.89843 * 1 2 3 28 28 H 1.09002 * 109.47226 * 239.99537 * 2 1 3 29 29 H 1.09000 * 109.47354 * 119.99870 * 2 1 3 30 30 H 1.08007 * 119.94242 * 0.02562 * 6 5 3 31 31 H 1.07997 * 120.02319 * 179.97438 * 7 6 5 32 32 H 1.07999 * 120.02296 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.94580 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.81959 * 240.45274 * 11 10 5 35 35 H 1.09000 * 109.81188 * 119.54205 * 11 10 5 36 36 H 1.09009 * 109.46696 * 299.99261 * 15 13 12 37 37 H 1.08992 * 109.47180 * 59.98997 * 15 13 12 38 38 H 1.08997 * 109.46755 * 299.99342 * 16 15 13 39 39 H 1.08997 * 109.46880 * 59.99689 * 16 15 13 40 40 H 0.97007 * 119.99972 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1298 1.4499 -0.0192 5 6 1.5456 2.1592 1.2310 6 6 1.7452 1.9040 2.5769 7 6 1.1739 2.7246 3.5301 8 6 0.4018 3.8030 3.1395 9 6 0.2031 4.0589 1.7965 10 6 0.7738 3.2356 0.8409 11 6 0.7237 3.2792 -0.6654 12 7 1.5174 2.1544 -1.1705 13 6 1.7310 1.8391 -2.4634 14 8 2.4895 0.9373 -2.7503 15 6 1.0274 2.6071 -3.5525 16 6 1.4425 2.0532 -4.9170 17 6 0.7384 2.8209 -6.0061 18 1 0.0628 3.6239 -5.7505 19 6 0.9576 2.4989 -7.3286 20 7 1.7807 1.5216 -7.6397 21 14 0.0854 3.4510 -8.6786 22 1 -0.7806 4.4923 -8.0697 23 1 1.0923 4.0963 -9.5589 24 1 -0.7493 2.5205 -9.4804 25 1 -0.3634 0.4358 -0.9306 26 1 -0.3634 -1.0239 0.0879 27 1 -0.3633 0.5880 0.8429 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.3494 1.0624 2.8823 31 1 1.3302 2.5240 4.5797 32 1 -0.0457 4.4450 3.8838 33 1 -0.4004 4.9011 1.4917 34 1 1.1449 4.2190 -1.0221 35 1 -0.3081 3.1837 -1.0036 36 1 -0.0510 2.5043 -3.4311 37 1 1.3013 3.6602 -3.4895 38 1 2.5208 2.1564 -5.0382 39 1 1.1689 1.0001 -4.9801 40 1 1.9346 1.2948 -8.5703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890615554.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:21 Heat of formation + Delta-G solvation = -34.148552 kcal Electronic energy + Delta-G solvation = -20773.018412 eV Core-core repulsion = 17744.375329 eV Total energy + Delta-G solvation = -3028.643082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04273 -40.00197 -37.44200 -35.61684 -34.56300 -32.99300 -31.94378 -31.62274 -28.57838 -27.82154 -26.16521 -24.11866 -23.41265 -22.37604 -21.34194 -20.04321 -18.76270 -17.68352 -17.34623 -17.20361 -16.90491 -16.45572 -15.90360 -15.51515 -15.34889 -15.18012 -14.58089 -14.37077 -14.16313 -14.08069 -13.79934 -13.64253 -13.20555 -13.17278 -12.86410 -12.66382 -12.48827 -12.44280 -12.11864 -11.99949 -11.93570 -11.66340 -11.56983 -11.29578 -10.80375 -10.58588 -10.10162 -9.73444 -9.29305 -8.18687 -6.32902 0.36313 0.45842 1.42089 1.43690 1.56992 1.60154 1.83698 2.42732 2.80265 3.14486 3.24215 3.41672 3.83919 3.95162 4.09635 4.13993 4.24484 4.28482 4.41036 4.41715 4.46834 4.57301 4.60409 4.67649 4.76172 4.78510 4.89155 4.97302 4.99543 5.04932 5.15155 5.25024 5.35221 5.48495 5.51705 5.59846 5.61744 5.67047 5.83332 6.06748 6.15832 6.43254 6.85072 7.15908 7.37405 8.94291 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031755 B = 0.003876 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.539537 B = 7221.996897 C = 7761.256010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.174 3.826 4 H 0.065 0.935 5 C -0.106 4.106 6 C -0.102 4.102 7 C -0.115 4.115 8 C -0.114 4.114 9 C -0.098 4.098 10 C -0.114 4.114 11 C 0.139 3.861 12 N -0.614 5.614 13 C 0.535 3.465 14 O -0.578 6.578 15 C -0.111 4.111 16 C 0.044 3.956 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.975 3.025 22 H -0.252 1.252 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.103 0.897 38 H -0.017 1.017 39 H -0.017 1.017 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 5.809 25.879 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.070 3.930 4 H 0.083 0.917 5 C -0.106 4.106 6 C -0.120 4.120 7 C -0.132 4.132 8 C -0.132 4.132 9 C -0.116 4.116 10 C -0.114 4.114 11 C 0.017 3.983 12 N -0.348 5.348 13 C 0.327 3.673 14 O -0.457 6.457 15 C -0.150 4.150 16 C 0.006 3.994 17 C -0.579 4.579 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.799 3.201 22 H -0.175 1.175 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.173 0.827 33 H 0.163 0.837 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.040 5.221 25.474 26.487 hybrid contribution 0.211 -0.185 -1.288 1.318 sum -4.829 5.036 24.186 25.172 Atomic orbital electron populations 1.21598 0.94629 1.01868 1.01169 1.21761 0.97424 0.94908 1.02403 1.19907 0.97604 0.92338 0.83129 0.91679 1.20124 0.99771 0.96871 0.93879 1.20715 1.00477 1.00731 0.90083 1.21420 0.96857 0.94647 1.00316 1.21463 0.98267 0.97884 0.95598 1.20776 0.99544 0.99213 0.92108 1.20344 0.99669 0.97132 0.94300 1.20486 0.97069 0.89868 0.90861 1.48082 1.51998 1.30478 1.04246 1.20945 0.80953 0.83427 0.81994 1.90652 1.38690 1.33783 1.82561 1.21617 1.00981 1.00301 0.92108 1.18689 0.94855 0.94733 0.91095 1.21710 1.26665 1.17912 0.91650 0.90556 1.26143 0.96022 0.96199 1.02069 1.70189 1.37667 1.31135 1.18759 0.85257 0.78250 0.78531 0.78104 1.17524 1.20601 1.20620 0.94844 0.91988 0.91580 0.93757 0.88918 0.84704 0.82920 0.82730 0.83669 0.88899 0.88830 0.87990 0.87928 0.99874 0.99885 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.51 71.98 0.68 -2.77 16 2 C -0.13 -3.51 5.62 30.59 0.17 -3.34 16 3 C 0.17 4.92 3.23 44.24 0.14 5.07 16 4 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 5 C -0.11 -2.31 4.18 -19.83 -0.08 -2.39 16 6 C -0.10 -1.69 10.04 22.29 0.22 -1.47 16 7 C -0.11 -1.42 10.05 22.25 0.22 -1.20 16 8 C -0.11 -1.35 10.05 22.25 0.22 -1.13 16 9 C -0.10 -1.45 10.05 22.30 0.22 -1.23 16 10 C -0.11 -2.31 6.22 -19.83 -0.12 -2.44 16 11 C 0.14 3.26 6.55 85.63 0.56 3.82 16 12 N -0.61 -19.55 2.34 -805.37 -1.89 -21.44 16 13 C 0.54 22.34 7.62 87.66 0.67 23.01 16 14 O -0.58 -29.68 15.27 -3.02 -0.05 -29.73 16 15 C -0.11 -4.66 4.90 29.85 0.15 -4.51 16 16 C 0.04 2.50 4.26 29.85 0.13 2.63 16 17 C -0.54 -31.18 9.11 25.60 0.23 -30.94 16 18 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 19 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 20 N -0.94 -60.05 13.29 21.45 0.28 -59.77 16 21 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 22 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H 0.03 0.98 7.73 -2.39 -0.02 0.96 16 26 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.07 1.49 7.07 -2.39 -0.02 1.47 16 28 H 0.04 1.56 7.08 -2.39 -0.02 1.54 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 32 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 33 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 3.83 8.14 -2.38 -0.02 3.81 16 37 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 38 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 39 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 40 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -77.24 331.95 5.27 -71.97 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.01 Total: 9.17 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 3.89 Total: -16.82 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -1.60 Total: -81.20 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.05 Total: -29.73 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -77.24 5.27 -71.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890615554.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.818 kcal (2) G-P(sol) polarization free energy of solvation -77.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds