Wall clock time and date at job start Mon Mar 30 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47478 * 2 1 4 4 H 1.08997 * 109.80636 * 53.41726 * 3 2 1 5 5 C 1.50775 * 109.81729 * 174.26571 * 3 2 1 6 6 C 1.38448 * 131.19564 * 299.59342 * 5 3 2 7 7 C 1.38149 * 120.09679 * 180.02562 * 6 5 3 8 8 C 1.38244 * 119.96604 * 359.97438 * 7 6 5 9 9 C 1.38154 * 119.96228 * 0.02562 * 8 7 6 10 10 C 1.38066 * 108.86606 * 119.61550 * 5 3 2 11 11 C 1.50781 * 108.85983 * 359.97438 * 10 5 3 12 12 N 1.46637 * 107.75942 * 359.96817 * 11 10 5 13 13 C 1.34773 * 126.56512 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00139 * 185.31692 * 13 12 11 15 15 C 1.50706 * 119.99806 * 5.32297 * 13 12 11 16 16 H 1.08998 * 109.47041 * 28.69074 * 15 13 12 17 17 C 1.52999 * 109.46712 * 268.69335 * 15 13 12 18 18 C 1.50698 * 109.47109 * 148.69438 * 15 13 12 19 19 H 1.07999 * 119.99825 * 0.02562 * 18 15 13 20 20 C 1.37876 * 119.99605 * 179.97438 * 18 15 13 21 21 N 1.31513 * 120.00242 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99741 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47247 * 60.00338 * 22 20 18 24 24 H 1.48501 * 109.47188 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47659 * 300.00335 * 22 20 18 26 26 H 1.08993 * 109.47141 * 77.72018 * 1 2 3 27 27 H 1.08996 * 109.46992 * 197.72220 * 1 2 3 28 28 H 1.09000 * 109.47260 * 317.71884 * 1 2 3 29 29 H 1.08999 * 109.47241 * 239.99888 * 2 1 3 30 30 H 1.09007 * 109.47463 * 119.99698 * 2 1 3 31 31 H 1.07998 * 119.95089 * 0.04389 * 6 5 3 32 32 H 1.08005 * 120.01513 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.02249 * 179.97438 * 8 7 6 34 34 H 1.07995 * 119.94708 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.81255 * 119.54819 * 11 10 5 36 36 H 1.08996 * 109.81104 * 240.38741 * 11 10 5 37 37 H 1.08999 * 109.47359 * 53.49575 * 17 15 13 38 38 H 1.08999 * 109.47146 * 173.49325 * 17 15 13 39 39 H 1.09003 * 109.47576 * 293.49478 * 17 15 13 40 40 H 0.97003 * 120.00216 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5869 1.9944 0.8235 5 6 3.5411 1.4538 0.1417 6 6 4.3658 0.9767 1.1462 7 6 5.7366 1.1110 1.0393 8 6 6.2859 1.7221 -0.0723 9 6 5.4635 2.1984 -1.0750 10 6 4.0897 2.0646 -0.9683 11 6 2.9760 2.4840 -1.8942 12 7 1.7069 2.0876 -1.2757 13 6 0.4726 2.2800 -1.7815 14 8 -0.5042 1.9899 -1.1238 15 6 0.3062 2.8553 -3.1644 16 1 1.1690 2.5890 -3.7749 17 6 0.1968 4.3787 -3.0731 18 6 -0.9451 2.2986 -3.7929 19 1 -1.5588 1.5984 -3.2456 20 6 -1.3070 2.6838 -5.0664 21 7 -0.5600 3.5368 -5.7326 22 14 -2.8578 1.9931 -5.8458 23 1 -4.0335 2.3550 -5.0138 24 1 -3.0224 2.5611 -7.2079 25 1 -2.7509 0.5147 -5.9350 26 1 -0.3633 0.2186 -1.0041 27 1 -0.3633 -0.9789 0.3128 28 1 -0.3634 0.7603 0.6914 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.9369 0.4986 2.0144 32 1 6.3787 0.7387 1.8239 33 1 7.3574 1.8279 -0.1566 34 1 5.8929 2.6754 -1.9435 35 1 2.9978 3.5650 -2.0324 36 1 3.0890 1.9862 -2.8572 37 1 1.0473 4.7713 -2.5159 38 1 0.1927 4.8035 -4.0769 39 1 -0.7277 4.6466 -2.5615 40 1 -0.8148 3.8081 -6.6284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890617557.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:32 Heat of formation + Delta-G solvation = 1.605415 kcal Electronic energy + Delta-G solvation = -21403.320563 eV Core-core repulsion = 18376.227889 eV Total energy + Delta-G solvation = -3027.092674 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69029 -38.51611 -35.90735 -34.02852 -33.02950 -31.02654 -30.78888 -29.98913 -26.96616 -25.24184 -25.17438 -22.75077 -22.14617 -21.32493 -20.28236 -18.51108 -16.64652 -16.31077 -16.04666 -15.65926 -15.46420 -14.66912 -14.41424 -14.14730 -13.69788 -13.42203 -13.13888 -12.92491 -12.71008 -12.51366 -12.21537 -12.04684 -11.82114 -11.56156 -11.12714 -11.01327 -10.91347 -10.74246 -10.65451 -10.52012 -10.32173 -10.06173 -9.94917 -9.01871 -8.87608 -8.82948 -8.56923 -8.31997 -7.80159 -6.05265 -4.08705 1.26789 1.31175 3.34757 3.37657 3.40522 3.52912 3.65467 3.67422 4.34644 4.45231 4.58995 4.93955 4.95365 5.27415 5.28363 5.37874 5.43889 5.49412 5.64096 5.69385 5.80835 5.85405 5.96764 5.99535 6.15496 6.22675 6.32649 6.38174 6.42010 6.54801 6.65605 6.67661 6.85564 6.88946 6.93584 6.99412 7.16774 7.47669 7.74848 7.96824 8.11397 8.37487 8.94980 9.17900 9.55917 11.02511 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.005152 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.973487 B = 5433.581972 C = 6088.152864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.177 3.823 4 H 0.079 0.921 5 C -0.096 4.096 6 C -0.097 4.097 7 C -0.122 4.122 8 C -0.120 4.120 9 C -0.098 4.098 10 C -0.098 4.098 11 C 0.148 3.852 12 N -0.622 5.622 13 C 0.539 3.461 14 O -0.524 6.524 15 C 0.038 3.962 16 H 0.044 0.956 17 C -0.126 4.126 18 C -0.501 4.501 19 H 0.067 0.933 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.900 3.100 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.089 0.911 27 H 0.030 0.970 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.009 0.991 38 H 0.090 0.910 39 H 0.037 0.963 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.297 -3.183 10.289 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.073 3.927 4 H 0.097 0.903 5 C -0.096 4.096 6 C -0.115 4.115 7 C -0.140 4.140 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.099 4.099 11 C 0.025 3.975 12 N -0.359 5.359 13 C 0.333 3.667 14 O -0.400 6.400 15 C 0.017 3.983 16 H 0.062 0.938 17 C -0.184 4.184 18 C -0.540 4.540 19 H 0.086 0.914 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.728 3.272 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.028 0.972 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.616 -3.221 10.404 16.667 hybrid contribution -0.565 -0.335 -0.413 0.775 sum 12.051 -3.555 9.991 16.053 Atomic orbital electron populations 1.22260 0.93585 0.99231 1.05601 1.21857 0.97896 0.94704 1.01481 1.19948 0.89522 0.94512 0.88722 0.90342 1.20440 0.95235 0.98683 0.95259 1.20475 0.92950 1.00034 0.98088 1.21014 0.94516 1.00098 0.98326 1.21025 0.99572 0.99045 0.94124 1.20503 0.91391 1.00339 0.99427 1.20500 0.94173 0.98857 0.96325 1.20223 0.81293 1.00512 0.95515 1.48455 1.05929 1.61205 1.20352 1.21676 0.79143 0.76250 0.89648 1.90562 1.38028 1.49657 1.61726 1.18853 0.99555 0.93843 0.86024 0.93819 1.21671 0.97529 0.96283 1.02945 1.20969 1.07289 1.26364 0.99341 0.91438 1.24915 0.97119 0.95025 0.96895 1.69873 1.38268 1.32860 1.12300 0.86519 0.83401 0.79275 0.78037 1.20113 1.21312 1.20225 0.89267 0.95088 0.92343 0.92011 0.92108 0.86041 0.85840 0.85772 0.85701 0.90075 0.89874 0.97182 0.89143 0.94415 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.11 37.15 0.30 -2.42 16 2 C -0.12 -1.92 5.57 -26.73 -0.15 -2.07 16 3 C 0.18 2.90 3.14 -68.89 -0.22 2.68 16 4 H 0.08 1.32 8.02 -51.93 -0.42 0.91 16 5 C -0.10 -1.35 5.50 -104.57 -0.57 -1.92 16 6 C -0.10 -1.12 10.04 -39.54 -0.40 -1.52 16 7 C -0.12 -1.21 10.05 -39.61 -0.40 -1.61 16 8 C -0.12 -1.19 10.05 -39.61 -0.40 -1.59 16 9 C -0.10 -1.13 10.05 -39.54 -0.40 -1.53 16 10 C -0.10 -1.37 6.22 -104.57 -0.65 -2.02 16 11 C 0.15 2.38 6.27 -5.08 -0.03 2.35 16 12 N -0.62 -11.76 3.08 -168.38 -0.52 -12.28 16 13 C 0.54 12.32 6.17 -10.98 -0.07 12.25 16 14 O -0.52 -13.01 11.41 5.56 0.06 -12.95 16 15 C 0.04 0.95 2.23 -92.92 -0.21 0.75 16 16 H 0.04 1.10 7.14 -51.93 -0.37 0.73 16 17 C -0.13 -3.00 8.86 37.16 0.33 -2.67 16 18 C -0.50 -13.97 8.32 -34.44 -0.29 -14.26 16 19 H 0.07 1.96 7.17 -52.49 -0.38 1.58 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -24.85 11.39 55.43 0.63 -24.22 16 22 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.09 1.95 5.32 -52.13 -0.28 1.68 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 1.10 7.22 -51.93 -0.37 0.72 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 36 H 0.08 1.34 7.73 -51.93 -0.40 0.94 16 37 H 0.01 0.19 7.93 -51.93 -0.41 -0.22 16 38 H 0.09 2.30 6.27 -51.93 -0.33 1.97 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -29.83 320.43 -9.14 -38.97 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.88 Total: 1.06 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.24 Total: -11.98 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.11 Total: -36.49 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.06 Total: -12.95 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.83 -9.14 -38.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890617557.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.570 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds