Wall clock time and date at job start Mon Mar 30 2020 02:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47349 * 2 1 4 4 H 1.09002 * 109.80414 * 306.03001 * 3 2 1 5 5 C 1.50783 * 110.00586 * 185.23742 * 3 2 1 6 6 C 1.38453 * 131.20093 * 59.87258 * 5 3 2 7 7 C 1.38144 * 120.10239 * 180.39330 * 6 5 3 8 8 C 1.38259 * 119.95942 * 0.27804 * 7 6 5 9 9 C 1.38148 * 119.96452 * 359.97438 * 8 7 6 10 10 C 1.38065 * 108.85858 * 240.74064 * 5 3 2 11 11 C 1.50778 * 108.86165 * 359.59974 * 10 5 3 12 12 N 1.46630 * 109.81302 * 66.86945 * 3 2 1 13 13 C 1.34778 * 126.56803 * 299.54667 * 12 3 2 14 14 O 1.21284 * 119.99610 * 354.57162 * 13 12 3 15 15 C 1.50697 * 120.00213 * 174.56292 * 13 12 3 16 16 H 1.09005 * 109.47191 * 323.72816 * 15 13 12 17 17 C 1.52993 * 109.46931 * 83.73212 * 15 13 12 18 18 C 1.50702 * 109.46856 * 203.73237 * 15 13 12 19 19 H 1.08004 * 120.00183 * 359.97438 * 18 15 13 20 20 C 1.37881 * 120.00145 * 180.02562 * 18 15 13 21 21 N 1.31515 * 119.99700 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 120.00228 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47075 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47029 * 119.99669 * 22 20 18 25 25 H 1.48501 * 109.47046 * 239.99600 * 22 20 18 26 26 H 1.09005 * 109.47096 * 45.33356 * 1 2 3 27 27 H 1.09001 * 109.47239 * 165.33276 * 1 2 3 28 28 H 1.08997 * 109.47008 * 285.33195 * 1 2 3 29 29 H 1.09003 * 109.47417 * 239.99309 * 2 1 3 30 30 H 1.09004 * 109.47121 * 120.00017 * 2 1 3 31 31 H 1.08003 * 119.94461 * 0.67081 * 6 5 3 32 32 H 1.07989 * 120.01790 * 180.25865 * 7 6 5 33 33 H 1.07995 * 120.01579 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.94901 * 180.02562 * 9 8 7 35 35 H 1.09007 * 109.80782 * 119.80404 * 11 10 5 36 36 H 1.09001 * 109.81385 * 240.63663 * 11 10 5 37 37 H 1.08991 * 109.47268 * 307.35720 * 17 15 13 38 38 H 1.09006 * 109.47218 * 67.36397 * 17 15 13 39 39 H 1.09005 * 109.46900 * 187.35740 * 17 15 13 40 40 H 0.96995 * 120.00096 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5944 1.9917 -0.8294 5 6 3.5422 1.4584 -0.1293 6 6 4.3774 0.9729 -1.1211 7 6 5.7471 1.1064 -1.0003 8 6 6.2852 1.7207 0.1153 9 6 5.4525 2.2007 1.1077 10 6 4.0798 2.0667 0.9874 11 6 2.9569 2.4891 1.9006 12 7 1.6948 2.0917 1.2686 13 6 0.4549 2.2861 1.7598 14 8 -0.5146 1.9969 1.0908 15 6 0.2730 2.8627 3.1402 16 1 1.0568 2.4859 3.7975 17 6 0.3558 4.3888 3.0703 18 6 -1.0739 2.4568 3.6806 19 1 -1.7326 1.8431 3.0840 20 6 -1.4659 2.8697 4.9364 21 7 -0.6641 3.6175 5.6627 22 14 -3.1358 2.3672 5.6060 23 1 -3.8410 1.5319 4.6011 24 1 -2.9533 1.5876 6.8567 25 1 -3.9400 3.5822 5.8928 26 1 -0.3633 0.7225 -0.7309 27 1 -0.3634 -0.9942 -0.2602 28 1 -0.3633 0.2717 0.9911 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9572 0.4930 -1.9927 32 1 6.3970 0.7310 -1.7767 33 1 7.3557 1.8260 0.2105 34 1 5.8731 2.6809 1.9789 35 1 3.0591 1.9927 2.8658 36 1 2.9785 3.5702 2.0372 37 1 1.2738 4.6799 2.5601 38 1 -0.5032 4.7745 2.5212 39 1 0.3555 4.7992 4.0802 40 1 -0.9396 3.9077 6.5462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890617720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:37 Heat of formation + Delta-G solvation = 3.980555 kcal Electronic energy + Delta-G solvation = -21410.940243 eV Core-core repulsion = 18383.950563 eV Total energy + Delta-G solvation = -3026.989680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.70810 -38.53770 -35.91049 -34.05638 -33.01422 -31.04593 -30.79160 -29.97525 -26.97035 -25.23673 -25.17620 -22.74103 -22.16174 -21.32605 -20.29347 -18.53505 -16.62728 -16.29542 -16.08075 -15.67234 -15.46753 -14.66753 -14.41245 -14.15308 -13.71973 -13.42041 -13.16209 -12.92785 -12.71644 -12.55554 -12.22801 -12.04277 -11.82200 -11.57773 -11.12199 -10.99953 -10.93344 -10.73664 -10.61691 -10.52441 -10.33692 -10.04174 -9.90616 -8.98837 -8.87534 -8.82985 -8.57361 -8.32300 -7.78581 -6.05091 -4.07938 1.26451 1.30896 3.31447 3.38934 3.44005 3.53877 3.63731 3.67093 4.34403 4.45874 4.58666 4.93665 4.95161 5.27425 5.28808 5.37449 5.43682 5.49210 5.63932 5.69381 5.79808 5.84456 5.96698 5.98950 6.15467 6.22363 6.32372 6.38233 6.41792 6.54552 6.65425 6.67056 6.84442 6.88352 6.92524 6.98681 7.19140 7.47628 7.74469 7.97811 8.10774 8.37597 8.97868 9.17493 9.57024 11.03026 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.005124 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.862538 B = 5463.524385 C = 6166.093198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C 0.177 3.823 4 H 0.078 0.922 5 C -0.096 4.096 6 C -0.097 4.097 7 C -0.122 4.122 8 C -0.120 4.120 9 C -0.098 4.098 10 C -0.098 4.098 11 C 0.148 3.852 12 N -0.622 5.622 13 C 0.538 3.462 14 O -0.521 6.521 15 C 0.037 3.963 16 H 0.045 0.955 17 C -0.127 4.127 18 C -0.500 4.500 19 H 0.071 0.929 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.899 3.101 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.010 0.990 38 H 0.036 0.964 39 H 0.089 0.911 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.587 -3.462 -10.027 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C 0.073 3.927 4 H 0.096 0.904 5 C -0.096 4.096 6 C -0.115 4.115 7 C -0.140 4.140 8 C -0.138 4.138 9 C -0.117 4.117 10 C -0.099 4.099 11 C 0.024 3.976 12 N -0.359 5.359 13 C 0.331 3.669 14 O -0.397 6.397 15 C 0.016 3.984 16 H 0.063 0.937 17 C -0.185 4.185 18 C -0.539 4.539 19 H 0.089 0.911 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.727 3.273 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.210 1.210 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.029 0.971 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.907 -3.507 -10.159 16.795 hybrid contribution -0.606 -0.218 0.371 0.743 sum 12.301 -3.725 -9.788 16.155 Atomic orbital electron populations 1.22357 0.93570 0.99161 1.06029 1.21854 0.97916 0.94665 1.01447 1.19907 0.89434 0.94476 0.88888 0.90385 1.20444 0.95215 0.98671 0.95286 1.20476 0.92869 0.99956 0.98241 1.21014 0.94578 1.00095 0.98266 1.21027 0.99550 0.99024 0.94165 1.20504 0.91343 1.00322 0.99498 1.20504 0.94184 0.98920 0.96270 1.20245 0.81317 1.00568 0.95451 1.48403 1.05883 1.61019 1.20601 1.21665 0.79037 0.76332 0.89859 1.90549 1.38762 1.49358 1.61005 1.18857 0.99619 0.93746 0.86158 0.93669 1.21685 0.96986 0.96601 1.03206 1.21105 1.00347 1.31986 1.00426 0.91075 1.24929 0.97498 0.94984 0.96654 1.69895 1.36249 1.36112 1.11134 0.86412 0.83863 0.78365 0.78709 1.19562 1.21068 1.20995 0.92521 0.95093 0.88739 0.92143 0.92050 0.86045 0.85839 0.85773 0.85704 0.89934 0.89964 0.97081 0.94471 0.89193 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.12 37.16 0.30 -2.50 16 2 C -0.12 -1.91 5.59 -26.73 -0.15 -2.06 16 3 C 0.18 2.89 3.14 -68.97 -0.22 2.68 16 4 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 5 C -0.10 -1.34 5.51 -104.57 -0.58 -1.92 16 6 C -0.10 -1.12 10.04 -39.54 -0.40 -1.52 16 7 C -0.12 -1.21 10.05 -39.61 -0.40 -1.61 16 8 C -0.12 -1.19 10.05 -39.61 -0.40 -1.59 16 9 C -0.10 -1.12 10.05 -39.54 -0.40 -1.52 16 10 C -0.10 -1.37 6.22 -104.57 -0.65 -2.02 16 11 C 0.15 2.36 6.33 -5.08 -0.03 2.32 16 12 N -0.62 -11.69 3.07 -168.49 -0.52 -12.21 16 13 C 0.54 12.23 6.20 -10.99 -0.07 12.17 16 14 O -0.52 -12.92 11.23 5.55 0.06 -12.86 16 15 C 0.04 0.92 2.10 -92.93 -0.20 0.73 16 16 H 0.05 1.15 7.44 -51.93 -0.39 0.76 16 17 C -0.13 -2.98 8.85 37.15 0.33 -2.65 16 18 C -0.50 -13.95 8.33 -34.44 -0.29 -14.24 16 19 H 0.07 2.08 7.00 -52.48 -0.37 1.71 16 20 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 21 N -0.89 -24.89 11.41 55.43 0.63 -24.25 16 22 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H 0.06 1.06 7.40 -51.93 -0.38 0.68 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 2.07 5.05 -53.07 -0.27 1.80 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.08 1.31 7.81 -51.93 -0.41 0.91 16 36 H 0.08 1.28 7.03 -51.93 -0.36 0.91 16 37 H 0.01 0.21 6.97 -51.93 -0.36 -0.15 16 38 H 0.04 0.89 8.13 -51.93 -0.42 0.47 16 39 H 0.09 2.27 6.30 -51.93 -0.33 1.94 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 318.60 15.07 4.80 4.80 Total: -1.00 -29.85 318.60 -9.07 -38.93 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.80 Total: 1.16 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.23 Total: -12.15 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.11 Total: -36.46 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.06 Total: -12.86 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.85 -9.07 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890617720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.908 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds