Wall clock time and date at job start Mon Mar 30 2020 02:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47349 * 2 1 4 4 H 1.09002 * 109.80414 * 306.03001 * 3 2 1 5 5 C 1.50783 * 110.00586 * 185.23742 * 3 2 1 6 6 C 1.38453 * 131.20093 * 59.87258 * 5 3 2 7 7 C 1.38144 * 120.10239 * 180.39330 * 6 5 3 8 8 C 1.38259 * 119.95942 * 0.27804 * 7 6 5 9 9 C 1.38148 * 119.96452 * 359.97438 * 8 7 6 10 10 C 1.38065 * 108.85858 * 240.74064 * 5 3 2 11 11 C 1.50778 * 108.86165 * 359.59974 * 10 5 3 12 12 N 1.46630 * 109.81302 * 66.86945 * 3 2 1 13 13 C 1.34778 * 126.56803 * 299.54667 * 12 3 2 14 14 O 1.21284 * 119.99610 * 354.57162 * 13 12 3 15 15 C 1.50697 * 120.00213 * 174.56292 * 13 12 3 16 16 H 1.09005 * 109.47191 * 323.72816 * 15 13 12 17 17 C 1.52993 * 109.46931 * 83.73212 * 15 13 12 18 18 C 1.50702 * 109.46856 * 203.73237 * 15 13 12 19 19 H 1.08004 * 120.00183 * 359.97438 * 18 15 13 20 20 C 1.37881 * 120.00145 * 180.02562 * 18 15 13 21 21 N 1.31515 * 119.99700 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 120.00228 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47075 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47029 * 119.99669 * 22 20 18 25 25 H 1.48501 * 109.47046 * 239.99600 * 22 20 18 26 26 H 1.09005 * 109.47096 * 45.33356 * 1 2 3 27 27 H 1.09001 * 109.47239 * 165.33276 * 1 2 3 28 28 H 1.08997 * 109.47008 * 285.33195 * 1 2 3 29 29 H 1.09003 * 109.47417 * 239.99309 * 2 1 3 30 30 H 1.09004 * 109.47121 * 120.00017 * 2 1 3 31 31 H 1.08003 * 119.94461 * 0.67081 * 6 5 3 32 32 H 1.07989 * 120.01790 * 180.25865 * 7 6 5 33 33 H 1.07995 * 120.01579 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.94901 * 180.02562 * 9 8 7 35 35 H 1.09007 * 109.80782 * 119.80404 * 11 10 5 36 36 H 1.09001 * 109.81385 * 240.63663 * 11 10 5 37 37 H 1.08991 * 109.47268 * 307.35720 * 17 15 13 38 38 H 1.09006 * 109.47218 * 67.36397 * 17 15 13 39 39 H 1.09005 * 109.46900 * 187.35740 * 17 15 13 40 40 H 0.96995 * 120.00096 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5944 1.9917 -0.8294 5 6 3.5422 1.4584 -0.1293 6 6 4.3774 0.9729 -1.1211 7 6 5.7471 1.1064 -1.0003 8 6 6.2852 1.7207 0.1153 9 6 5.4525 2.2007 1.1077 10 6 4.0798 2.0667 0.9874 11 6 2.9569 2.4891 1.9006 12 7 1.6948 2.0917 1.2686 13 6 0.4549 2.2861 1.7598 14 8 -0.5146 1.9969 1.0908 15 6 0.2730 2.8627 3.1402 16 1 1.0568 2.4859 3.7975 17 6 0.3558 4.3888 3.0703 18 6 -1.0739 2.4568 3.6806 19 1 -1.7326 1.8431 3.0840 20 6 -1.4659 2.8697 4.9364 21 7 -0.6641 3.6175 5.6627 22 14 -3.1358 2.3672 5.6060 23 1 -3.8410 1.5319 4.6011 24 1 -2.9533 1.5876 6.8567 25 1 -3.9400 3.5822 5.8928 26 1 -0.3633 0.7225 -0.7309 27 1 -0.3634 -0.9942 -0.2602 28 1 -0.3633 0.2717 0.9911 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.9572 0.4930 -1.9927 32 1 6.3970 0.7310 -1.7767 33 1 7.3557 1.8260 0.2105 34 1 5.8731 2.6809 1.9789 35 1 3.0591 1.9927 2.8658 36 1 2.9785 3.5702 2.0372 37 1 1.2738 4.6799 2.5601 38 1 -0.5032 4.7745 2.5212 39 1 0.3555 4.7992 4.0802 40 1 -0.9396 3.9077 6.5462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890617720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:35 Heat of formation + Delta-G solvation = -11.808728 kcal Electronic energy + Delta-G solvation = -21411.624918 eV Core-core repulsion = 18383.950563 eV Total energy + Delta-G solvation = -3027.674355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.96834 -39.96284 -37.22860 -35.94720 -34.52263 -32.61012 -31.79676 -31.56811 -28.20267 -27.27510 -26.54328 -24.38441 -23.41529 -22.30431 -21.63987 -20.10619 -18.41282 -17.89036 -17.41003 -17.03543 -16.92756 -16.29618 -15.52005 -15.41733 -15.25481 -14.82583 -14.62160 -14.46349 -14.04368 -13.88940 -13.66885 -13.37001 -13.21286 -13.01366 -12.82160 -12.73815 -12.59341 -12.33916 -12.30363 -12.02089 -11.96150 -11.59294 -11.48243 -11.06304 -10.60577 -10.26769 -9.89281 -9.73838 -9.18143 -8.17137 -6.27081 0.35857 0.45227 1.38736 1.40797 1.53585 1.85223 2.02330 2.44440 2.79556 3.13160 3.29349 3.44905 3.93436 4.05639 4.14949 4.23068 4.29002 4.39359 4.43860 4.49563 4.58667 4.68085 4.70648 4.78178 4.86201 4.91802 4.94300 4.99708 5.04108 5.13843 5.21220 5.33132 5.47892 5.51268 5.60237 5.60622 5.69999 5.72927 5.89622 6.07098 6.15769 6.61497 6.80002 7.36750 7.46018 8.89872 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.005124 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.862538 B = 5463.524385 C = 6166.093198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.174 3.826 4 H 0.068 0.932 5 C -0.113 4.113 6 C -0.099 4.099 7 C -0.114 4.114 8 C -0.113 4.113 9 C -0.102 4.102 10 C -0.117 4.117 11 C 0.144 3.856 12 N -0.622 5.622 13 C 0.536 3.464 14 O -0.550 6.550 15 C 0.036 3.964 16 H 0.035 0.965 17 C -0.112 4.112 18 C -0.525 4.525 19 H 0.048 0.952 20 C 0.022 3.978 21 N -0.911 5.911 22 Si 0.956 3.044 23 H -0.278 1.278 24 H -0.273 1.273 25 H -0.275 1.275 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.140 0.860 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.021 0.979 39 H 0.072 0.928 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.174 -4.121 -11.180 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.071 3.929 4 H 0.086 0.914 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.120 4.120 10 C -0.117 4.117 11 C 0.021 3.979 12 N -0.356 5.356 13 C 0.329 3.671 14 O -0.429 6.429 15 C 0.015 3.985 16 H 0.052 0.948 17 C -0.171 4.171 18 C -0.564 4.564 19 H 0.066 0.934 20 C -0.178 4.178 21 N -0.550 5.550 22 Si 0.782 3.218 23 H -0.203 1.203 24 H -0.199 1.199 25 H -0.201 1.201 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.159 0.841 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.040 0.960 39 H 0.091 0.909 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.542 -4.163 -11.312 19.668 hybrid contribution -1.296 -0.032 0.687 1.468 sum 14.246 -4.194 -10.625 18.260 Atomic orbital electron populations 1.22169 0.95497 0.99641 1.03082 1.21804 0.95972 0.94762 1.02584 1.19998 0.91733 0.94195 0.87010 0.91377 1.20297 0.93458 1.00831 0.96744 1.20762 0.93482 0.99511 0.98005 1.21459 0.94153 0.98665 0.98862 1.21468 1.01064 0.97296 0.93198 1.20786 0.90243 1.00236 1.00736 1.20383 0.94702 1.00658 0.95971 1.20333 0.81135 1.00595 0.95839 1.48188 1.05610 1.60131 1.21710 1.21113 0.80126 0.76648 0.89235 1.90542 1.40166 1.50676 1.61468 1.18737 0.97853 0.94522 0.87426 0.94751 1.21485 0.97725 0.95684 1.02169 1.21227 1.01632 1.32516 1.00988 0.93417 1.25585 1.00637 0.94870 0.96684 1.69968 1.37421 1.36204 1.11384 0.85533 0.80015 0.78233 0.78058 1.20335 1.19852 1.20050 0.93732 0.93250 0.92845 0.88754 0.92886 0.84175 0.82435 0.82463 0.84055 0.90583 0.89951 0.94182 0.95982 0.90882 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 8.12 71.98 0.58 -4.89 16 2 C -0.11 -3.54 5.59 30.59 0.17 -3.36 16 3 C 0.17 5.69 3.14 44.25 0.14 5.83 16 4 H 0.07 2.34 8.06 -2.39 -0.02 2.32 16 5 C -0.11 -2.98 5.51 -19.83 -0.11 -3.09 16 6 C -0.10 -1.95 10.04 22.30 0.22 -1.73 16 7 C -0.11 -1.72 10.05 22.25 0.22 -1.50 16 8 C -0.11 -1.72 10.05 22.25 0.22 -1.50 16 9 C -0.10 -2.04 10.05 22.30 0.22 -1.81 16 10 C -0.12 -3.10 6.22 -19.83 -0.12 -3.22 16 11 C 0.14 4.65 6.33 85.63 0.54 5.19 16 12 N -0.62 -24.08 3.07 -805.37 -2.48 -26.55 16 13 C 0.54 25.61 6.20 87.66 0.54 26.15 16 14 O -0.55 -28.86 11.23 -3.04 -0.03 -28.90 16 15 C 0.04 1.85 2.10 -12.29 -0.03 1.83 16 16 H 0.03 1.83 7.44 -2.38 -0.02 1.81 16 17 C -0.11 -5.45 8.85 71.98 0.64 -4.82 16 18 C -0.53 -30.59 8.33 25.60 0.21 -30.37 16 19 H 0.05 2.95 7.00 -2.91 -0.02 2.93 16 20 C 0.02 1.22 5.30 84.66 0.45 1.66 16 21 N -0.91 -51.41 11.41 21.45 0.24 -51.17 16 22 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H 0.04 1.72 7.40 -2.38 -0.02 1.71 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 2.47 5.05 -20.47 -0.10 2.37 16 29 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.16 1.35 8.06 -2.92 -0.02 1.32 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.08 2.50 7.81 -2.38 -0.02 2.48 16 36 H 0.08 2.59 7.03 -2.39 -0.02 2.57 16 37 H 0.04 1.65 6.97 -2.39 -0.02 1.63 16 38 H 0.02 1.08 8.13 -2.38 -0.02 1.06 16 39 H 0.07 3.78 6.30 -2.38 -0.02 3.76 16 40 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -67.19 318.60 4.61 -62.58 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.93 Total: 12.55 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 3.91 Total: -15.63 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -2.23 Total: -77.72 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.03 Total: -28.90 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -67.19 4.61 -62.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890617720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.770 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds