Wall clock time and date at job start Mon Mar 30 2020 01:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32565 * 1 3 3 C 1.50703 * 119.99695 * 2 1 4 4 C 1.47814 * 120.00448 * 180.02562 * 2 1 3 5 5 C 1.39583 * 120.10827 * 245.01886 * 4 2 1 6 6 C 1.38000 * 119.99880 * 179.97438 * 5 4 2 7 7 C 1.38243 * 120.21764 * 359.75405 * 6 5 4 8 8 C 1.38949 * 120.20969 * 0.50438 * 7 6 5 9 9 N 1.39943 * 119.99668 * 179.76840 * 8 7 6 10 10 C 1.34779 * 120.00241 * 214.82246 * 9 8 7 11 11 O 1.21284 * 119.99915 * 355.38873 * 10 9 8 12 12 C 1.50695 * 120.00150 * 175.38600 * 10 9 8 13 13 C 1.53002 * 109.47227 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47248 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.46766 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99633 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99889 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47127 * 59.99632 * 19 17 15 21 21 H 1.48500 * 109.46743 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46914 * 299.99465 * 19 17 15 23 23 C 1.38639 * 120.00240 * 359.49136 * 8 7 6 24 24 H 1.07997 * 120.00176 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99394 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47385 * 240.00043 * 3 2 1 27 27 H 1.08999 * 109.47352 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47230 * 119.99966 * 3 2 1 29 29 H 1.08002 * 120.00286 * 359.96021 * 5 4 2 30 30 H 1.07999 * 119.89324 * 180.02562 * 6 5 4 31 31 H 1.07996 * 119.89459 * 180.25056 * 7 6 5 32 32 H 0.97005 * 120.00359 * 34.83015 * 9 8 7 33 33 H 1.09003 * 109.47533 * 60.00352 * 12 10 9 34 34 H 1.09002 * 109.47448 * 299.99863 * 12 10 9 35 35 H 1.09002 * 109.46893 * 299.99762 * 13 12 10 36 36 H 1.09003 * 109.47385 * 59.99832 * 13 12 10 37 37 H 1.09002 * 109.46808 * 299.99604 * 14 13 12 38 38 H 1.08993 * 109.46982 * 60.00014 * 14 13 12 39 39 H 0.97010 * 119.99836 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.10602 * 180.22620 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0791 1.3052 0.0000 4 6 2.0648 -1.2801 -0.0006 5 6 2.8566 -1.6319 1.0938 6 6 3.5453 -2.8278 1.0911 7 6 3.4503 -3.6829 0.0091 8 6 2.6689 -3.3391 -1.0873 9 7 2.5798 -4.2060 -2.1823 10 6 2.4751 -3.7072 -3.4300 11 8 2.3739 -2.5103 -3.5980 12 6 2.4838 -4.6365 -4.6162 13 6 2.3532 -3.8209 -5.9041 14 6 2.3614 -4.7645 -7.1085 15 6 2.2334 -3.9609 -8.3770 16 1 2.1537 -2.8850 -8.3289 17 6 2.2170 -4.5996 -9.5988 18 7 2.3136 -5.9099 -9.6572 19 14 2.0591 -3.6036 -11.1712 20 1 3.2000 -2.6589 -11.2755 21 1 2.0669 -4.5195 -12.3401 22 1 0.7852 -2.8408 -11.1481 23 6 1.9731 -2.1400 -1.0940 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 2.7058 1.3630 -0.8900 27 1 1.3708 2.1336 -0.0005 28 1 2.7058 1.3630 0.8900 29 1 2.9304 -0.9682 1.9426 30 1 4.1571 -3.0985 1.9389 31 1 3.9883 -4.6193 0.0142 32 1 2.5932 -5.1660 -2.0433 33 1 1.6476 -5.3315 -4.5396 34 1 3.4198 -5.1948 -4.6336 35 1 1.4173 -3.2623 -5.8870 36 1 3.1897 -3.1261 -5.9806 37 1 3.2971 -5.3234 -7.1257 38 1 1.5248 -5.4588 -7.0317 39 1 2.3024 -6.3592 -10.5169 40 1 1.3624 -1.8728 -1.9437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890888458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:46 Heat of formation + Delta-G solvation = -16.507367 kcal Electronic energy + Delta-G solvation = -19642.002094 eV Core-core repulsion = 16614.123991 eV Total energy + Delta-G solvation = -3027.878103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50170 -38.71328 -35.81966 -34.31806 -34.15375 -32.10569 -30.37813 -29.69232 -27.70242 -27.29507 -24.19377 -23.35188 -22.44096 -20.56612 -19.85025 -19.29481 -17.15693 -16.75787 -16.32987 -16.03598 -15.61379 -15.00380 -14.82547 -14.43581 -14.14707 -13.86347 -13.57990 -13.37899 -13.17727 -12.53432 -12.41703 -12.29607 -11.97656 -11.82643 -11.69765 -11.41458 -11.10892 -10.79948 -10.66189 -10.56459 -10.36233 -9.73254 -9.69822 -9.42452 -9.29441 -9.05357 -8.72008 -8.32853 -8.17859 -5.98651 -4.00260 1.05656 1.29604 2.05479 2.75770 3.10320 3.36263 3.39671 3.43565 3.69546 4.46519 4.48888 4.79369 4.90584 5.01028 5.02702 5.12762 5.31890 5.37445 5.40705 5.46064 5.54575 5.61858 5.63855 5.64909 5.78695 5.89413 6.15614 6.19282 6.27469 6.31908 6.41175 6.53180 6.63579 6.67825 6.87890 6.97109 7.12678 7.41307 7.68671 7.81134 8.01537 8.26356 8.45274 9.06521 9.63787 11.12818 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025574 B = 0.003099 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.611911 B = 9034.180581 C = 9850.191145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.088 4.088 3 C -0.114 4.114 4 C -0.037 4.037 5 C -0.129 4.129 6 C -0.101 4.101 7 C -0.151 4.151 8 C 0.153 3.847 9 N -0.684 5.684 10 C 0.512 3.488 11 O -0.516 6.516 12 C -0.137 4.137 13 C -0.096 4.096 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.111 4.111 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.411 0.589 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.261 0.739 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 5.480 24.144 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.088 4.088 3 C -0.170 4.170 4 C -0.037 4.037 5 C -0.148 4.148 6 C -0.120 4.120 7 C -0.171 4.171 8 C 0.059 3.941 9 N -0.329 5.329 10 C 0.301 3.699 11 O -0.390 6.390 12 C -0.177 4.177 13 C -0.134 4.134 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.131 4.131 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.246 0.754 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.228 6.173 23.791 24.580 hybrid contribution -0.005 -0.173 -0.831 0.849 sum 0.224 6.000 22.960 23.732 Atomic orbital electron populations 1.24133 0.94539 1.02069 1.00955 1.20474 0.94532 0.93215 1.00617 1.20837 1.00252 0.93497 1.02454 1.18835 0.97258 0.93789 0.93867 1.21121 0.98265 0.97314 0.98125 1.20818 0.99273 0.94021 0.97888 1.20962 1.00165 1.01444 0.94546 1.17750 0.96183 0.92237 0.87956 1.43814 1.74104 1.09816 1.05206 1.21534 0.74341 0.90225 0.83792 1.90682 1.46532 1.16377 1.85376 1.21882 1.04121 0.98615 0.93062 1.21474 1.01722 0.98332 0.91859 1.19123 0.97168 0.94293 0.91019 1.21229 1.49893 0.93516 0.91148 0.92611 1.25017 0.95345 0.94900 0.99208 1.69953 1.50872 1.07634 1.25284 0.86644 0.78756 0.79909 0.82640 1.20212 1.21318 1.20205 1.21468 0.99490 0.93624 0.98489 0.87817 0.88324 0.91187 0.91689 0.91565 0.86127 0.85717 0.85761 0.75350 0.88967 0.88945 0.92592 0.92588 0.96571 0.96559 0.92987 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 13.96 28.82 0.40 -1.42 16 2 C -0.09 -0.97 5.44 -102.61 -0.56 -1.53 16 3 C -0.11 -1.04 10.10 36.01 0.36 -0.68 16 4 C -0.04 -0.45 5.32 -105.04 -0.56 -1.01 16 5 C -0.13 -1.34 9.77 -39.17 -0.38 -1.72 16 6 C -0.10 -0.97 10.02 -39.67 -0.40 -1.37 16 7 C -0.15 -1.57 9.96 -39.32 -0.39 -1.97 16 8 C 0.15 1.98 6.29 -83.74 -0.53 1.45 16 9 N -0.68 -8.40 5.34 -9.90 -0.05 -8.45 16 10 C 0.51 8.12 7.67 -10.99 -0.08 8.03 16 11 O -0.52 -10.09 13.42 5.55 0.07 -10.01 16 12 C -0.14 -2.19 5.70 -27.88 -0.16 -2.35 16 13 C -0.10 -2.04 4.44 -26.73 -0.12 -2.16 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 19 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.11 -1.57 8.36 -39.00 -0.33 -1.90 16 24 H 0.10 0.86 7.86 -52.49 -0.41 0.45 16 25 H 0.10 1.00 8.05 -52.49 -0.42 0.58 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.50 7.80 -51.93 -0.41 0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.41 3.59 8.82 -40.82 -0.36 3.23 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.14 2.32 6.22 -52.49 -0.33 2.00 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -33.30 343.49 -8.49 -41.79 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.11 Total: 0.82 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -3.29 Total: -19.99 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.68 Total: -34.77 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.30 -8.49 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890888458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.278 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds