Wall clock time and date at job start Mon Mar 30 2020 01:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32565 * 1 3 3 C 1.50703 * 119.99695 * 2 1 4 4 C 1.47814 * 120.00448 * 180.02562 * 2 1 3 5 5 C 1.39583 * 120.10827 * 245.01886 * 4 2 1 6 6 C 1.38000 * 119.99880 * 179.97438 * 5 4 2 7 7 C 1.38243 * 120.21764 * 359.75405 * 6 5 4 8 8 C 1.38949 * 120.20969 * 0.50438 * 7 6 5 9 9 N 1.39943 * 119.99668 * 179.76840 * 8 7 6 10 10 C 1.34779 * 120.00241 * 214.82246 * 9 8 7 11 11 O 1.21284 * 119.99915 * 355.38873 * 10 9 8 12 12 C 1.50695 * 120.00150 * 175.38600 * 10 9 8 13 13 C 1.53002 * 109.47227 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47248 * 180.02562 * 13 12 10 15 15 C 1.50704 * 109.46766 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99633 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99889 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47127 * 59.99632 * 19 17 15 21 21 H 1.48500 * 109.46743 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46914 * 299.99465 * 19 17 15 23 23 C 1.38639 * 120.00240 * 359.49136 * 8 7 6 24 24 H 1.07997 * 120.00176 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99394 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47385 * 240.00043 * 3 2 1 27 27 H 1.08999 * 109.47352 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.47230 * 119.99966 * 3 2 1 29 29 H 1.08002 * 120.00286 * 359.96021 * 5 4 2 30 30 H 1.07999 * 119.89324 * 180.02562 * 6 5 4 31 31 H 1.07996 * 119.89459 * 180.25056 * 7 6 5 32 32 H 0.97005 * 120.00359 * 34.83015 * 9 8 7 33 33 H 1.09003 * 109.47533 * 60.00352 * 12 10 9 34 34 H 1.09002 * 109.47448 * 299.99863 * 12 10 9 35 35 H 1.09002 * 109.46893 * 299.99762 * 13 12 10 36 36 H 1.09003 * 109.47385 * 59.99832 * 13 12 10 37 37 H 1.09002 * 109.46808 * 299.99604 * 14 13 12 38 38 H 1.08993 * 109.46982 * 60.00014 * 14 13 12 39 39 H 0.97010 * 119.99836 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.10602 * 180.22620 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0791 1.3052 0.0000 4 6 2.0648 -1.2801 -0.0006 5 6 2.8566 -1.6319 1.0938 6 6 3.5453 -2.8278 1.0911 7 6 3.4503 -3.6829 0.0091 8 6 2.6689 -3.3391 -1.0873 9 7 2.5798 -4.2060 -2.1823 10 6 2.4751 -3.7072 -3.4300 11 8 2.3739 -2.5103 -3.5980 12 6 2.4838 -4.6365 -4.6162 13 6 2.3532 -3.8209 -5.9041 14 6 2.3614 -4.7645 -7.1085 15 6 2.2334 -3.9609 -8.3770 16 1 2.1537 -2.8850 -8.3289 17 6 2.2170 -4.5996 -9.5988 18 7 2.3136 -5.9099 -9.6572 19 14 2.0591 -3.6036 -11.1712 20 1 3.2000 -2.6589 -11.2755 21 1 2.0669 -4.5195 -12.3401 22 1 0.7852 -2.8408 -11.1481 23 6 1.9731 -2.1400 -1.0940 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 2.7058 1.3630 -0.8900 27 1 1.3708 2.1336 -0.0005 28 1 2.7058 1.3630 0.8900 29 1 2.9304 -0.9682 1.9426 30 1 4.1571 -3.0985 1.9389 31 1 3.9883 -4.6193 0.0142 32 1 2.5932 -5.1660 -2.0433 33 1 1.6476 -5.3315 -4.5396 34 1 3.4198 -5.1948 -4.6336 35 1 1.4173 -3.2623 -5.8870 36 1 3.1897 -3.1261 -5.9806 37 1 3.2971 -5.3234 -7.1257 38 1 1.5248 -5.4588 -7.0317 39 1 2.3024 -6.3592 -10.5169 40 1 1.3624 -1.8728 -1.9437 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890888458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:45 Heat of formation + Delta-G solvation = -35.571864 kcal Electronic energy + Delta-G solvation = -19642.828793 eV Core-core repulsion = 16614.123991 eV Total energy + Delta-G solvation = -3028.704802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59231 -39.73662 -36.78716 -36.12583 -35.18554 -34.06512 -31.33477 -30.76630 -29.32215 -28.06578 -25.99266 -24.25646 -23.62472 -22.10101 -21.21273 -20.20962 -18.63451 -17.95080 -17.78687 -17.17532 -16.82155 -16.50368 -15.87322 -15.85837 -15.28311 -14.91504 -14.76816 -14.49516 -14.26850 -13.96680 -13.79890 -13.48949 -13.16696 -13.10584 -12.77911 -12.62540 -12.54418 -12.49319 -12.44128 -11.91931 -11.58438 -11.48735 -11.36542 -11.26280 -10.77387 -10.54898 -10.22026 -9.59597 -9.11072 -8.21242 -6.31212 0.19446 0.39218 1.24065 1.38953 1.41724 1.49847 1.56556 2.04323 2.41103 2.82660 3.11834 3.62258 3.81489 4.04887 4.11893 4.17825 4.22968 4.25134 4.35373 4.55819 4.59541 4.65893 4.75403 4.80071 4.83088 4.93807 5.05620 5.07304 5.09550 5.17463 5.32741 5.38755 5.46586 5.52570 5.55671 5.68888 5.73954 5.82681 5.85684 6.08214 6.26166 6.41693 6.84017 7.12779 7.37426 8.90067 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025574 B = 0.003099 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.611911 B = 9034.180581 C = 9850.191145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.106 4.106 3 C -0.111 4.111 4 C -0.051 4.051 5 C -0.128 4.128 6 C -0.096 4.096 7 C -0.145 4.145 8 C 0.129 3.871 9 N -0.664 5.664 10 C 0.514 3.486 11 O -0.561 6.561 12 C -0.127 4.127 13 C -0.083 4.083 14 C 0.027 3.973 15 C -0.550 4.550 16 H 0.051 0.949 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.961 3.039 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.139 4.139 24 H 0.122 0.878 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.429 0.571 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 5.428 25.900 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.106 4.106 3 C -0.168 4.168 4 C -0.051 4.051 5 C -0.147 4.147 6 C -0.114 4.114 7 C -0.165 4.165 8 C 0.035 3.965 9 N -0.311 5.311 10 C 0.304 3.696 11 O -0.438 6.438 12 C -0.166 4.166 13 C -0.121 4.121 14 C -0.010 4.010 15 C -0.588 4.588 16 H 0.069 0.931 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.194 1.194 23 C -0.159 4.159 24 H 0.140 0.860 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.162 0.838 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.268 0.732 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.989 6.087 25.590 26.323 hybrid contribution -0.244 -0.171 -1.289 1.323 sum 0.745 5.916 24.302 25.022 Atomic orbital electron populations 1.24281 0.94527 1.02606 1.00360 1.20724 0.95007 0.93662 1.01197 1.20850 1.00450 0.93031 1.02448 1.19062 0.97984 0.94051 0.94029 1.21469 0.97219 0.98051 0.97935 1.21283 0.98567 0.93110 0.98438 1.21290 0.99113 1.02587 0.93502 1.17964 0.97472 0.92191 0.88837 1.43498 1.72715 1.10824 1.04026 1.21366 0.74042 0.89350 0.84837 1.90681 1.48915 1.18123 1.86123 1.21697 1.06251 0.98101 0.90577 1.21177 1.00287 0.97600 0.93079 1.19006 0.95650 0.94332 0.92037 1.21670 1.50428 0.93738 0.92966 0.93121 1.25893 0.94708 0.96060 1.02742 1.70056 1.51301 1.09126 1.26400 0.85568 0.79057 0.78521 0.78334 1.19455 1.20301 1.19450 1.21350 1.00751 0.95285 0.98507 0.86026 0.89080 0.92660 0.90261 0.89995 0.83789 0.82131 0.82927 0.73185 0.86780 0.86750 0.94080 0.94100 0.97930 0.97927 0.92620 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 13.96 66.67 0.93 -2.74 16 2 C -0.11 -2.32 5.44 -18.48 -0.10 -2.42 16 3 C -0.11 -1.96 10.10 71.24 0.72 -1.24 16 4 C -0.05 -1.23 5.32 -20.14 -0.11 -1.34 16 5 C -0.13 -2.37 9.77 22.54 0.22 -2.15 16 6 C -0.10 -1.50 10.02 22.21 0.22 -1.28 16 7 C -0.14 -2.63 9.96 22.44 0.22 -2.41 16 8 C 0.13 3.25 6.29 38.11 0.24 3.49 16 9 N -0.66 -15.75 5.34 -303.61 -1.62 -17.37 16 10 C 0.51 16.45 7.67 87.66 0.67 17.12 16 11 O -0.56 -22.95 13.42 -3.04 -0.04 -22.99 16 12 C -0.13 -4.00 5.70 29.85 0.17 -3.83 16 13 C -0.08 -3.64 4.44 30.60 0.14 -3.51 16 14 C 0.03 1.42 4.97 29.85 0.15 1.56 16 15 C -0.55 -32.46 9.11 25.60 0.23 -32.23 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 17 C 0.00 0.24 5.46 84.66 0.46 0.70 16 18 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 19 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C -0.14 -4.06 8.36 22.65 0.19 -3.87 16 24 H 0.12 1.94 7.86 -2.91 -0.02 1.92 16 25 H 0.09 1.93 8.05 -2.91 -0.02 1.91 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.08 1.13 7.80 -2.39 -0.02 1.11 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 31 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.43 6.64 8.82 -92.70 -0.82 5.82 16 33 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 36 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 40 H 0.11 3.86 6.22 -2.91 -0.02 3.84 16 Total: -1.00 -74.31 343.49 5.21 -69.10 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.20 Total: 14.19 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 4.36 Total: -34.15 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -1.34 Total: -73.48 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.04 Total: -22.99 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -74.31 5.21 -69.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890888458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.527 kcal (2) G-P(sol) polarization free energy of solvation -74.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds