Wall clock time and date at job start Mon Mar 30 2020 02:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99945 * 2 1 4 4 N 1.46900 * 109.47408 * 125.29812 * 3 2 1 5 5 C 1.46907 * 110.99412 * 301.77311 * 4 3 2 6 6 C 1.50697 * 109.46967 * 287.82055 * 5 4 3 7 7 H 1.08004 * 119.99995 * 4.84671 * 6 5 4 8 8 C 1.37874 * 120.00110 * 184.84377 * 6 5 4 9 9 N 1.31513 * 120.00466 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00080 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47269 * 89.99703 * 10 8 6 12 12 H 1.48498 * 109.47470 * 210.00181 * 10 8 6 13 13 H 1.48504 * 109.46805 * 329.99921 * 10 8 6 14 14 C 1.46897 * 110.99883 * 65.72261 * 4 3 2 15 15 C 1.50697 * 109.47141 * 66.05277 * 14 4 3 16 16 C 1.37972 * 119.87942 * 259.72729 * 15 14 4 17 17 C 1.38245 * 120.35540 * 179.82014 * 16 15 14 18 18 C 1.38393 * 119.76152 * 0.38724 * 17 16 15 19 19 C 1.37699 * 119.98064 * 359.69135 * 18 17 16 20 20 C 1.38929 * 120.78873 * 0.29260 * 19 18 17 21 21 O 1.36127 * 111.23337 * 179.29263 * 20 19 18 22 22 C 1.43768 * 109.26210 * 18.86858 * 21 20 19 23 23 C 1.51646 * 132.17826 * 180.55092 * 19 18 17 24 24 H 1.08007 * 119.99962 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99861 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00304 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47183 * 5.29204 * 3 2 1 28 28 H 1.09006 * 109.47133 * 245.29477 * 3 2 1 29 29 H 1.08994 * 109.47373 * 47.82418 * 5 4 3 30 30 H 1.09002 * 109.46488 * 167.82483 * 5 4 3 31 31 H 0.97000 * 120.00636 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.46614 * 186.04751 * 14 4 3 33 33 H 1.09001 * 109.47414 * 306.04523 * 14 4 3 34 34 H 1.08001 * 119.82579 * 0.06721 * 16 15 14 35 35 H 1.07994 * 120.12014 * 180.12032 * 17 16 15 36 36 H 1.08001 * 120.01275 * 179.70583 * 18 17 16 37 37 H 1.09000 * 110.74803 * 90.64309 * 22 21 20 38 38 H 1.08995 * 110.75046 * 213.80942 * 22 21 20 39 39 H 1.08990 * 110.94369 * 46.11399 * 23 19 18 40 40 H 1.08998 * 110.96972 * 282.43839 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0014 1.3291 1.1303 5 6 2.2934 1.1543 2.4056 6 6 1.5203 2.4074 2.7268 7 1 1.4881 3.2193 2.0153 8 6 0.8541 2.5173 3.9288 9 7 0.1790 3.6107 4.2090 10 14 0.9104 1.1133 5.1598 11 1 2.0696 1.2984 6.0691 12 1 -0.3445 1.1005 5.9537 13 1 1.0507 -0.1751 4.4348 14 6 4.0494 0.3129 0.9665 15 6 4.9092 0.6647 -0.2201 16 6 4.7070 0.0291 -1.4280 17 6 5.4876 0.3469 -2.5239 18 6 6.4819 1.3021 -2.4053 19 6 6.6864 1.9366 -1.2004 20 6 5.9083 1.6261 -0.0921 21 8 6.2852 2.3543 0.9945 22 6 7.0415 3.4973 0.5604 23 6 7.6665 3.0102 -0.7684 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3590 2.1315 0.0948 28 1 2.6172 1.4050 -0.9337 29 1 1.6051 0.3129 2.3267 30 1 3.0157 0.9598 3.1984 31 1 -0.2900 3.6879 5.0545 32 1 4.6661 0.2789 1.8646 33 1 3.5886 -0.6616 0.8051 34 1 3.9323 -0.7178 -1.5189 35 1 5.3248 -0.1516 -3.4679 36 1 7.0972 1.5501 -3.2576 37 1 6.3862 4.3512 0.3886 38 1 7.8157 3.7464 1.2860 39 1 7.7067 3.8178 -1.4992 40 1 8.6578 2.5889 -0.6012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894585853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:31 Heat of formation + Delta-G solvation = 26.913041 kcal Electronic energy + Delta-G solvation = -21171.475108 eV Core-core repulsion = 18145.479855 eV Total energy + Delta-G solvation = -3025.995253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.93392 -38.01521 -36.75031 -33.15122 -32.72183 -31.83015 -30.29872 -29.14458 -27.63789 -26.16222 -23.76490 -23.09096 -21.85548 -20.80746 -20.60801 -18.69383 -17.19553 -16.68198 -16.37261 -16.04414 -15.28586 -15.09637 -14.72136 -14.15862 -13.88314 -13.63055 -13.41316 -13.04798 -12.89547 -12.58431 -12.42992 -12.21158 -11.84433 -11.60226 -11.43955 -11.17485 -11.00102 -10.80655 -10.71673 -10.67203 -10.43789 -10.27942 -9.80220 -9.25751 -8.83558 -8.56345 -8.48080 -7.89369 -7.25774 -5.97903 -3.93166 1.40611 1.54062 2.82849 3.33295 3.40208 3.43025 3.48751 3.85366 4.46863 4.48656 4.64428 4.91918 4.97584 5.08318 5.19484 5.31924 5.37150 5.45044 5.48171 5.52942 5.60804 5.65329 5.74355 5.79372 5.92416 6.00529 6.14906 6.29996 6.38167 6.46886 6.54462 6.61570 6.71470 6.81222 6.89804 7.06763 7.13372 7.31094 7.41547 7.69357 7.98904 8.11422 8.74228 9.11233 9.64758 11.15585 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.005841 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.131426 B = 4792.525019 C = 5701.175980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.183 4.183 3 C 0.088 3.912 4 N -0.510 5.510 5 C 0.161 3.839 6 C -0.497 4.497 7 H 0.078 0.922 8 C 0.068 3.932 9 N -0.903 5.903 10 Si 0.872 3.128 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.091 3.909 15 C -0.085 4.085 16 C -0.082 4.082 17 C -0.154 4.154 18 C -0.077 4.077 19 C -0.185 4.185 20 C 0.135 3.865 21 O -0.290 6.290 22 C 0.051 3.949 23 C -0.108 4.108 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.066 0.934 29 H -0.004 1.004 30 H 0.020 0.980 31 H 0.262 0.738 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.743 -5.733 -12.811 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.202 4.202 3 C -0.040 4.040 4 N -0.232 5.232 5 C 0.036 3.964 6 C -0.536 4.536 7 H 0.096 0.904 8 C -0.133 4.133 9 N -0.543 5.543 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.037 4.037 15 C -0.086 4.086 16 C -0.100 4.100 17 C -0.172 4.172 18 C -0.095 4.095 19 C -0.186 4.186 20 C 0.089 3.911 21 O -0.203 6.203 22 C -0.024 4.024 23 C -0.145 4.145 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.014 0.986 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.831 -5.192 -12.374 18.567 hybrid contribution -0.369 -1.417 0.688 1.618 sum 12.462 -6.609 -11.686 18.318 Atomic orbital electron populations 1.23756 0.96045 1.01309 1.00751 1.23576 0.96745 0.99815 1.00098 1.21301 0.94457 0.94381 0.93879 1.62282 1.12232 1.45406 1.03249 1.20208 0.92726 0.97382 0.86131 1.20976 1.28540 1.00979 1.03082 0.90356 1.24855 0.95247 0.95393 0.97780 1.69890 1.33729 1.26671 1.23999 0.86910 0.77565 0.83635 0.81951 1.20245 1.21323 1.19336 1.20984 0.93590 0.93796 0.95360 1.19154 0.95220 0.97912 0.96321 1.20800 0.98796 0.99020 0.91411 1.20904 0.97740 0.99863 0.98732 1.20178 0.97890 0.95926 0.95540 1.20771 0.99784 1.02734 0.95287 1.19304 0.92917 0.92939 0.85931 1.86926 1.68839 1.35993 1.28494 1.23803 0.94696 0.88585 0.95320 1.21762 0.98275 0.97037 0.97422 0.88181 0.89672 0.88690 0.89567 0.91617 0.98595 0.96172 0.92820 0.90484 0.94705 0.85647 0.85902 0.86366 0.90372 0.87952 0.89445 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 14.32 29.01 0.42 -2.68 16 2 C -0.18 -3.22 7.39 -36.03 -0.27 -3.48 16 3 C 0.09 1.71 5.44 -4.98 -0.03 1.68 16 4 N -0.51 -11.01 4.65 -238.96 -1.11 -12.12 16 5 C 0.16 4.02 3.64 -4.97 -0.02 4.00 16 6 C -0.50 -14.38 9.25 -34.44 -0.32 -14.70 16 7 H 0.08 2.47 7.60 -52.48 -0.40 2.07 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 10 Si 0.87 22.07 27.38 -169.99 -4.65 17.42 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.27 -6.58 6.68 56.52 0.38 -6.21 16 14 C 0.09 1.66 4.91 -4.98 -0.02 1.64 16 15 C -0.08 -1.39 4.60 -104.35 -0.48 -1.87 16 16 C -0.08 -1.12 8.55 -39.68 -0.34 -1.46 16 17 C -0.15 -1.84 10.07 -39.52 -0.40 -2.23 16 18 C -0.08 -0.92 10.03 -39.72 -0.40 -1.32 16 19 C -0.18 -2.51 6.27 -104.10 -0.65 -3.16 16 20 C 0.14 2.23 6.76 -38.95 -0.26 1.97 16 21 O -0.29 -5.00 11.05 -20.14 -0.22 -5.23 16 22 C 0.05 0.64 8.01 38.06 0.30 0.94 16 23 C -0.11 -1.15 7.12 -26.52 -0.19 -1.34 16 24 H 0.10 1.79 7.84 -52.48 -0.41 1.38 16 25 H 0.08 1.28 8.06 -52.49 -0.42 0.85 16 26 H 0.10 1.53 6.82 -52.49 -0.36 1.18 16 27 H 0.09 1.88 6.89 -51.93 -0.36 1.52 16 28 H 0.07 1.17 6.33 -51.93 -0.33 0.84 16 29 H 0.00 -0.09 6.03 -51.93 -0.31 -0.40 16 30 H 0.02 0.51 6.97 -51.93 -0.36 0.15 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.08 1.48 7.86 -51.93 -0.41 1.07 16 33 H 0.03 0.59 6.25 -51.93 -0.32 0.27 16 34 H 0.13 1.53 8.02 -52.49 -0.42 1.11 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -32.54 325.42 -8.86 -41.41 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.80 Total: 1.04 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.75 Total: -20.11 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.34 Total: -39.44 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.22 Total: -5.23 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.65 Total: 17.42 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.54 -8.86 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894585853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.320 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds