Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 119.99847 * 2 1 4 4 H 1.09001 * 109.46877 * 0.02562 * 3 2 1 5 5 C 1.52994 * 109.46806 * 120.00028 * 3 2 1 6 6 C 1.53008 * 109.47311 * 294.99601 * 5 3 2 7 7 C 1.52999 * 109.46842 * 239.99839 * 3 2 1 8 8 C 1.50703 * 109.47118 * 65.00315 * 7 3 2 9 9 O 1.21281 * 119.99884 * 355.21785 * 8 7 3 10 10 N 1.34774 * 120.00007 * 175.21979 * 8 7 3 11 11 C 1.37148 * 119.99981 * 5.99634 * 10 8 7 12 12 H 1.07993 * 119.99666 * 53.61348 * 11 10 8 13 13 C 1.38887 * 119.99948 * 233.61847 * 11 10 8 14 14 N 1.31423 * 120.00063 * 5.47229 * 13 11 10 15 15 Si 1.86794 * 120.00050 * 185.47173 * 13 11 10 16 16 H 1.48499 * 109.47075 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47386 * 120.00042 * 15 13 11 18 18 H 1.48503 * 109.47248 * 240.00165 * 15 13 11 19 19 C 1.39786 * 120.00112 * 185.99809 * 10 8 7 20 20 C 1.38963 * 120.07624 * 8.29266 * 19 10 8 21 21 C 1.38087 * 119.91964 * 179.79308 * 20 19 10 22 22 C 1.38312 * 120.07937 * 0.45853 * 21 20 19 23 23 C 1.38311 * 120.15055 * 359.79428 * 22 21 20 24 24 C 1.38075 * 120.08263 * 359.97118 * 23 22 21 25 25 H 1.07996 * 120.00016 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00049 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00049 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47264 * 175.00253 * 5 3 2 29 29 H 1.09001 * 109.47638 * 55.00340 * 5 3 2 30 30 H 1.08996 * 109.46901 * 60.00353 * 6 5 3 31 31 H 1.08995 * 109.47116 * 300.00257 * 6 5 3 32 32 H 1.08998 * 109.47039 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.46581 * 185.00095 * 7 3 2 34 34 H 1.08994 * 109.47501 * 305.00159 * 7 3 2 35 35 H 0.97005 * 119.99790 * 185.00112 * 14 13 11 36 36 H 1.07997 * 120.03926 * 359.97438 * 20 19 10 37 37 H 1.08004 * 119.95881 * 180.24916 * 21 20 19 38 38 H 1.07996 * 119.92364 * 179.76431 * 22 21 20 39 39 H 1.08001 * 119.95432 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.04073 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0564 1.4308 2.4954 7 6 2.9431 1.3862 -1.2492 8 6 2.0698 1.4301 -2.4766 9 8 0.8674 1.3123 -2.3698 10 7 2.6248 1.6001 -3.6929 11 6 3.9895 1.6100 -3.8286 12 1 4.5765 0.7900 -3.4421 13 6 4.6166 2.6746 -4.4629 14 7 3.9160 3.7216 -4.8372 15 14 6.4559 2.6183 -4.7841 16 1 7.0094 1.3401 -4.2693 17 1 6.7066 2.7142 -6.2446 18 1 7.1141 3.7561 -4.0931 19 6 1.8096 1.7665 -4.8162 20 6 0.4380 1.9295 -4.6632 21 6 -0.3638 2.0978 -5.7748 22 6 0.1955 2.0949 -7.0398 23 6 1.5596 1.9278 -7.1959 24 6 2.3680 1.7637 -6.0886 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.5540 2.2879 1.2057 29 1 3.5906 0.5105 1.2952 30 1 1.4455 0.5291 2.5390 31 1 1.4090 2.3064 2.4494 32 1 2.6830 1.4889 3.3853 33 1 3.5540 2.2879 -1.2055 34 1 3.5906 0.5106 -1.2952 35 1 4.3391 4.4323 -5.3441 36 1 0.0001 1.9273 -3.6760 37 1 -1.4293 2.2286 -5.6564 38 1 -0.4344 2.2230 -7.9076 39 1 1.9929 1.9256 -8.1852 40 1 3.4330 1.6328 -6.2113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902983249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = 10.839073 kcal Electronic energy + Delta-G solvation = -21356.923559 eV Core-core repulsion = 18330.231286 eV Total energy + Delta-G solvation = -3026.692273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.70161 -37.60191 -36.11940 -34.85233 -31.86097 -31.38826 -30.24472 -29.60322 -28.28357 -25.20568 -24.25841 -21.72435 -21.26459 -20.95900 -19.39782 -19.00395 -17.59535 -16.07445 -15.51070 -15.22588 -14.82868 -14.62487 -14.10267 -14.02536 -13.68027 -13.24631 -12.92970 -12.76985 -12.70668 -12.24506 -11.90249 -11.82901 -11.53114 -11.28395 -11.20964 -11.07387 -10.89142 -10.82466 -10.72719 -10.44947 -10.36415 -10.06479 -9.98001 -9.24246 -8.79245 -8.75672 -8.03917 -7.75192 -6.84641 -6.26628 -4.47617 2.49260 2.60990 2.91727 3.03094 3.12946 3.15789 3.82870 3.99054 4.54119 4.79156 5.13369 5.22041 5.27630 5.40321 5.55388 5.71569 5.82706 5.90832 5.98607 6.01839 6.03923 6.14652 6.20515 6.23711 6.30859 6.40050 6.43540 6.57400 6.72643 6.73612 6.78548 6.96221 7.16949 7.18502 7.28400 7.41704 7.54531 7.66506 7.71013 7.84534 8.11264 8.47672 8.89877 9.31822 9.70536 10.52365 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014748 B = 0.007400 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.095648 B = 3783.087587 C = 5389.032135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.137 4.137 3 C -0.046 4.046 4 H 0.075 0.925 5 C -0.116 4.116 6 C -0.149 4.149 7 C -0.110 4.110 8 C 0.491 3.509 9 O -0.558 6.558 10 N -0.390 5.390 11 C -0.366 4.366 12 H 0.092 0.908 13 C 0.056 3.944 14 N -0.841 5.841 15 Si 0.913 3.087 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.278 1.278 19 C 0.198 3.802 20 C -0.184 4.184 21 C -0.118 4.118 22 C -0.178 4.178 23 C -0.120 4.120 24 C -0.110 4.110 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.273 0.727 36 H 0.166 0.834 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 -3.358 5.922 6.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.065 4.065 4 H 0.094 0.906 5 C -0.153 4.153 6 C -0.206 4.206 7 C -0.150 4.150 8 C 0.284 3.716 9 O -0.442 6.442 10 N -0.097 5.097 11 C -0.493 4.493 12 H 0.109 0.891 13 C -0.154 4.154 14 N -0.473 5.473 15 Si 0.739 3.261 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.203 1.203 19 C 0.101 3.899 20 C -0.204 4.204 21 C -0.137 4.137 22 C -0.197 4.197 23 C -0.139 4.139 24 C -0.131 4.131 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.182 0.818 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.164 -3.191 6.024 6.916 hybrid contribution 1.141 0.247 -0.663 1.342 sum -0.023 -2.945 5.361 6.117 Atomic orbital electron populations 1.23538 0.95898 1.00704 1.00749 1.22597 0.95878 0.97104 0.99920 1.20199 0.96655 0.96476 0.93203 0.90618 1.21534 0.97882 1.01848 0.94064 1.21757 0.99767 1.01915 0.97180 1.21385 0.97962 1.04126 0.91497 1.20904 0.87949 0.77708 0.85071 1.90295 1.15388 1.52378 1.86144 1.41105 1.06104 1.59596 1.02930 1.19328 0.79961 1.05666 1.44388 0.89088 1.25611 0.99861 0.93796 0.96130 1.69974 1.37269 1.06993 1.33038 0.86080 0.82671 0.78794 0.78571 1.18895 1.20235 1.20330 1.18194 0.89552 0.94487 0.87704 1.22384 0.92942 1.03546 1.01484 1.20831 0.98462 1.01591 0.92777 1.20724 0.94976 1.07526 0.96500 1.20713 0.93633 1.02092 0.97436 1.20742 0.99783 1.01858 0.90709 0.89824 0.88888 0.88610 0.91891 0.92086 0.92587 0.92979 0.93355 0.88910 0.89904 0.91657 0.81790 0.87883 0.88295 0.87925 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 13.13 29.01 0.38 -2.33 16 2 C -0.14 -2.17 6.70 -36.02 -0.24 -2.41 16 3 C -0.05 -0.75 1.82 -91.77 -0.17 -0.91 16 4 H 0.08 1.32 7.67 -51.93 -0.40 0.93 16 5 C -0.12 -1.50 5.39 -26.73 -0.14 -1.65 16 6 C -0.15 -1.72 9.73 37.16 0.36 -1.36 16 7 C -0.11 -2.05 3.99 -27.88 -0.11 -2.16 16 8 C 0.49 11.29 7.32 -10.99 -0.08 11.21 16 9 O -0.56 -13.21 10.55 5.56 0.06 -13.15 16 10 N -0.39 -9.70 2.66 -58.98 -0.16 -9.86 16 11 C -0.37 -8.91 7.40 -14.93 -0.11 -9.03 16 12 H 0.09 2.12 7.77 -52.49 -0.41 1.71 16 13 C 0.06 1.36 3.85 -17.49 -0.07 1.29 16 14 N -0.84 -21.91 11.62 55.49 0.64 -21.27 16 15 Si 0.91 18.62 29.56 -169.99 -5.02 13.59 16 16 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 C 0.20 5.01 5.71 -83.69 -0.48 4.53 16 20 C -0.18 -4.44 8.97 -39.37 -0.35 -4.79 16 21 C -0.12 -2.52 10.04 -39.61 -0.40 -2.91 16 22 C -0.18 -3.63 10.04 -39.53 -0.40 -4.02 16 23 C -0.12 -2.57 10.04 -39.61 -0.40 -2.97 16 24 C -0.11 -2.66 7.86 -39.37 -0.31 -2.97 16 25 H 0.08 1.19 8.06 -52.49 -0.42 0.77 16 26 H 0.09 1.53 7.83 -52.49 -0.41 1.11 16 27 H 0.10 1.43 8.06 -52.49 -0.42 1.00 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.65 7.38 -51.93 -0.38 0.26 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.77 8.06 -51.93 -0.42 1.35 16 34 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 35 H 0.27 6.76 8.32 -40.82 -0.34 6.42 16 36 H 0.17 4.08 4.75 -55.01 -0.26 3.82 16 37 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 38 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 39 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.12 3.00 6.03 -52.49 -0.32 2.69 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -27.33 326.42 -8.03 -35.35 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.96 Total: 10.90 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.51 Total: -20.48 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.49 Total: -31.13 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.06 Total: -13.15 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.33 -8.03 -35.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902983249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.194 kcal (2) G-P(sol) polarization free energy of solvation -27.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds