Wall clock time and date at job start Mon Mar 30 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50696 * 120.00060 * 2 1 4 4 N 1.46509 * 109.46894 * 124.99967 * 3 2 1 5 5 C 1.34772 * 119.99888 * 269.99925 * 4 3 2 6 6 O 1.21548 * 120.00042 * 42.34145 * 5 4 3 7 7 C 1.47889 * 120.00015 * 222.33701 * 5 4 3 8 8 C 1.39917 * 120.02550 * 336.57482 * 7 5 4 9 9 C 1.38324 * 120.35963 * 179.73789 * 8 7 5 10 10 C 1.37755 * 120.40942 * 0.56698 * 9 8 7 11 11 C 1.40741 * 120.04037 * 359.69056 * 10 9 8 12 12 C 1.41433 * 120.17980 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00455 * 145.84349 * 12 11 10 14 14 C 1.39942 * 120.00123 * 325.84495 * 12 11 10 15 15 N 1.30823 * 120.00332 * 174.62103 * 14 12 11 16 16 Si 1.86801 * 119.99485 * 354.61692 * 14 12 11 17 17 H 1.48497 * 109.47110 * 90.43644 * 16 14 12 18 18 H 1.48504 * 109.47112 * 210.43488 * 16 14 12 19 19 H 1.48498 * 109.47586 * 330.43497 * 16 14 12 20 20 C 1.38992 * 120.02459 * 156.85399 * 7 5 4 21 21 C 1.46497 * 119.99777 * 90.00120 * 4 3 2 22 22 C 1.52999 * 109.47355 * 86.67982 * 21 4 3 23 23 C 1.53004 * 109.47023 * 206.67568 * 21 4 3 24 24 H 1.08007 * 120.00095 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.99925 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99925 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47467 * 244.99361 * 3 2 1 28 28 H 1.08999 * 109.47192 * 5.00024 * 3 2 1 29 29 H 1.08001 * 119.81821 * 0.02562 * 8 7 5 30 30 H 1.07999 * 119.79937 * 180.27948 * 9 8 7 31 31 H 1.08002 * 119.97888 * 179.71737 * 10 9 8 32 32 H 0.97005 * 120.00253 * 180.02562 * 15 14 12 33 33 H 1.08003 * 120.20385 * 359.94761 * 20 7 5 34 34 H 1.09002 * 109.47490 * 326.67480 * 21 4 3 35 35 H 1.08997 * 109.47142 * 61.18898 * 22 21 4 36 36 H 1.08998 * 109.47510 * 181.18522 * 22 21 4 37 37 H 1.09001 * 109.47298 * 301.19016 * 22 21 4 38 38 H 1.09007 * 109.47001 * 100.83938 * 23 21 4 39 39 H 1.08993 * 109.47490 * 220.83790 * 23 21 4 40 40 H 1.09008 * 109.47133 * 340.84301 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5936 1.8222 2.3214 6 8 1.4925 1.5437 2.7543 7 6 3.4943 2.6990 3.1004 8 6 4.8772 2.6417 2.8953 9 6 5.7256 3.4625 3.6162 10 6 5.2202 4.3374 4.5526 11 6 3.8324 4.4054 4.7766 12 6 3.3103 5.3030 5.7369 13 1 2.3528 5.7743 5.5712 14 6 4.0344 5.5804 6.9018 15 7 3.6034 6.4884 7.7393 16 14 5.6164 4.6542 7.2610 17 1 6.7655 5.3930 6.6791 18 1 5.7974 4.5348 8.7301 19 1 5.5438 3.2985 6.6594 20 6 2.9682 3.5766 4.0411 21 6 4.3589 0.8255 0.9695 22 6 5.2583 1.9443 0.4401 23 6 4.8877 0.3429 2.3217 24 1 -0.5401 -0.9354 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8499 -0.9353 0.0004 27 1 2.6213 1.4026 -0.9313 28 1 1.3585 2.1316 0.0896 29 1 5.2840 1.9560 2.1667 30 1 6.7912 3.4139 3.4474 31 1 5.8894 4.9719 5.1149 32 1 4.1055 6.6809 8.5466 33 1 1.9017 3.6217 4.2055 34 1 4.3572 -0.0044 0.2628 35 1 5.2768 2.7654 1.1567 36 1 6.2693 1.5620 0.2996 37 1 4.8696 2.3027 -0.5131 38 1 4.8163 -0.7436 2.3729 39 1 5.9292 0.6442 2.4331 40 1 4.2941 0.7842 3.1224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915854576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:44 Heat of formation + Delta-G solvation = 71.399080 kcal Electronic energy + Delta-G solvation = -21430.278220 eV Core-core repulsion = 18406.212026 eV Total energy + Delta-G solvation = -3024.066194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12815 -39.19035 -38.15492 -36.08837 -35.10663 -32.82027 -32.04791 -31.59967 -28.44946 -27.27759 -26.94523 -24.37685 -23.42557 -22.29467 -21.06487 -20.20501 -18.85107 -18.30513 -17.65791 -17.20868 -16.79044 -16.49906 -15.78525 -15.29008 -15.11904 -14.98516 -14.64975 -14.50496 -14.43915 -14.08549 -13.73354 -13.40527 -13.20786 -12.98474 -12.86030 -12.57821 -12.41951 -12.26595 -12.14962 -12.02299 -11.76235 -11.64111 -11.23644 -10.92632 -10.51829 -10.26454 -9.67049 -9.44523 -9.29650 -8.84013 -6.55112 0.14668 0.76460 1.23189 1.28091 1.39649 1.46460 1.71444 2.11358 2.22815 2.64082 3.39633 3.65395 3.89748 3.96823 4.09350 4.18297 4.21704 4.28803 4.41513 4.48226 4.60562 4.73763 4.76950 4.82556 4.88742 4.91778 5.01989 5.03624 5.10580 5.20841 5.31218 5.43407 5.52895 5.66613 5.68136 5.71985 5.76159 5.84959 5.92275 6.12093 6.30591 6.45059 6.65669 6.75839 7.05003 8.25398 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026771 B = 0.005459 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.669574 B = 5127.925474 C = 5791.966064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.174 4.174 3 C 0.149 3.851 4 N -0.635 5.635 5 C 0.584 3.416 6 O -0.558 6.558 7 C -0.129 4.129 8 C -0.221 4.221 9 C -0.101 4.101 10 C -0.214 4.214 11 C 0.058 3.942 12 C -0.491 4.491 13 H 0.044 0.956 14 C 0.037 3.963 15 N -0.869 5.869 16 Si 0.973 3.027 17 H -0.247 1.247 18 H -0.284 1.284 19 H -0.245 1.245 20 C -0.164 4.164 21 C 0.140 3.860 22 C -0.219 4.219 23 C -0.192 4.192 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.056 0.944 29 H 0.228 0.772 30 H 0.150 0.850 31 H 0.104 0.896 32 H 0.292 0.708 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.887 -13.123 -16.530 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.193 4.193 3 C 0.028 3.972 4 N -0.370 5.370 5 C 0.376 3.624 6 O -0.436 6.436 7 C -0.132 4.132 8 C -0.237 4.237 9 C -0.118 4.118 10 C -0.234 4.234 11 C 0.056 3.944 12 C -0.522 4.522 13 H 0.062 0.938 14 C -0.175 4.175 15 N -0.497 5.497 16 Si 0.796 3.204 17 H -0.172 1.172 18 H -0.212 1.212 19 H -0.169 1.169 20 C -0.184 4.184 21 C 0.038 3.962 22 C -0.276 4.276 23 C -0.249 4.249 24 H 0.127 0.873 25 H 0.105 0.895 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.167 0.833 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.265 -13.087 -16.080 21.968 hybrid contribution -0.564 0.576 1.025 1.304 sum 6.701 -12.510 -15.055 20.690 Atomic orbital electron populations 1.23923 0.96301 1.02052 0.99938 1.23395 0.96390 0.99211 1.00351 1.20658 0.91996 0.95135 0.89405 1.47653 1.13944 1.65713 1.09681 1.18585 0.85089 0.77520 0.81247 1.90672 1.26187 1.57851 1.68902 1.20010 0.95467 0.99039 0.98712 1.23965 0.91301 1.04233 1.04243 1.21154 1.00526 0.94900 0.95268 1.21428 0.94469 1.04204 1.03265 1.17745 0.92736 0.91261 0.92706 1.19429 1.05531 1.23372 1.03881 0.93761 1.26894 1.01822 0.94112 0.94633 1.69671 1.40483 1.28136 1.11411 0.85442 0.77424 0.81032 0.76519 1.17151 1.21171 1.16887 1.21233 0.98077 0.98968 1.00135 1.21397 0.79590 0.97152 0.98050 1.23280 1.00869 1.00403 1.03049 1.23032 1.03214 1.01997 0.96647 0.87297 0.89505 0.86089 0.86130 0.92553 0.75705 0.83250 0.87808 0.89787 0.90039 0.86410 0.89293 0.88274 0.91186 0.91312 0.88009 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.17 14.32 67.79 0.97 -3.20 16 2 C -0.17 -3.82 9.71 25.65 0.25 -3.57 16 3 C 0.15 3.39 5.88 85.63 0.50 3.89 16 4 N -0.63 -17.26 2.42 -805.47 -1.95 -19.20 16 5 C 0.58 22.57 5.64 86.80 0.49 23.06 16 6 O -0.56 -25.93 16.92 -3.87 -0.07 -25.99 16 7 C -0.13 -5.38 5.10 -20.13 -0.10 -5.48 16 8 C -0.22 -7.38 4.58 22.70 0.10 -7.27 16 9 C -0.10 -3.57 10.01 22.18 0.22 -3.35 16 10 C -0.21 -9.65 6.81 22.77 0.16 -9.49 16 11 C 0.06 3.05 5.14 -21.32 -0.11 2.94 16 12 C -0.49 -29.23 9.62 23.47 0.23 -29.00 16 13 H 0.04 2.89 8.06 -2.91 -0.02 2.87 16 14 C 0.04 2.05 5.51 85.26 0.47 2.52 16 15 N -0.87 -50.18 13.93 21.83 0.30 -49.87 16 16 Si 0.97 43.09 24.37 68.60 1.67 44.76 16 17 H -0.25 -9.86 6.73 99.48 0.67 -9.19 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.25 -10.85 6.42 99.48 0.64 -10.21 16 20 C -0.16 -8.35 9.33 23.01 0.21 -8.13 16 21 C 0.14 2.65 3.13 44.99 0.14 2.79 16 22 C -0.22 -3.53 8.58 71.98 0.62 -2.91 16 23 C -0.19 -4.12 7.90 71.98 0.57 -3.55 16 24 H 0.11 2.09 8.06 -2.91 -0.02 2.07 16 25 H 0.09 2.08 7.84 -2.91 -0.02 2.06 16 26 H 0.12 2.27 8.06 -2.91 -0.02 2.24 16 27 H 0.12 1.81 8.07 -2.39 -0.02 1.79 16 28 H 0.06 1.49 7.68 -2.39 -0.02 1.47 16 29 H 0.23 5.47 0.67 -45.14 -0.03 5.44 16 30 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 31 H 0.10 4.58 4.27 -2.91 -0.01 4.57 16 32 H 0.29 15.12 8.30 -92.70 -0.77 14.35 16 33 H 0.08 4.49 7.81 -2.91 -0.02 4.47 16 34 H 0.12 1.50 8.10 -2.39 -0.02 1.48 16 35 H 0.09 1.97 4.13 -3.56 -0.01 1.96 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.10 1.71 6.71 -2.39 -0.02 1.69 16 40 H 0.05 1.58 3.93 -2.38 -0.01 1.57 16 Total: -1.00 -72.30 313.32 5.59 -66.71 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.91 Total: 24.37 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 4.72 Total: -40.76 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -1.64 Total: -69.08 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.07 Total: -25.99 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.67 Total: 44.76 kcal Total: -72.30 5.59 -66.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915854576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.106 kcal (2) G-P(sol) polarization free energy of solvation -72.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds