Wall clock time and date at job start Mon Mar 30 2020 01:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46756 * 2 1 4 4 C 1.50704 * 109.46790 * 180.02562 * 3 2 1 5 5 C 1.33016 * 119.99717 * 135.78099 * 4 3 2 6 6 C 1.47060 * 120.00227 * 7.96044 * 5 4 3 7 7 O 1.21623 * 120.00112 * 18.38334 * 6 5 4 8 8 N 1.34779 * 119.99833 * 198.37661 * 6 5 4 9 9 C 1.39839 * 119.99682 * 186.56575 * 8 6 5 10 10 C 1.38898 * 120.06818 * 213.81900 * 9 8 6 11 11 C 1.38111 * 119.92361 * 179.97438 * 10 9 8 12 12 C 1.38288 * 120.07114 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.92506 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47293 * 89.99837 * 13 12 11 15 15 H 1.07998 * 119.99475 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99895 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00352 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99884 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47101 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47255 * 119.99909 * 18 16 14 21 21 H 1.48494 * 109.47438 * 239.99974 * 18 16 14 22 22 C 1.38280 * 120.14639 * 0.24994 * 12 11 10 23 23 C 1.38113 * 120.07537 * 359.45104 * 22 12 11 24 24 H 1.08999 * 109.47235 * 299.99837 * 1 2 3 25 25 H 1.08999 * 109.47151 * 60.00177 * 1 2 3 26 26 H 1.09000 * 109.46557 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47190 * 240.00747 * 2 1 3 28 28 H 1.08997 * 109.47610 * 120.00059 * 2 1 3 29 29 H 1.08999 * 109.47116 * 60.00090 * 3 2 1 30 30 H 1.08999 * 109.47146 * 299.99826 * 3 2 1 31 31 H 1.07994 * 119.99901 * 315.77138 * 4 3 2 32 32 H 1.08001 * 119.99922 * 187.96771 * 5 4 3 33 33 H 0.96997 * 120.00152 * 6.56801 * 8 6 5 34 34 H 1.07994 * 120.03980 * 359.95644 * 10 9 8 35 35 H 1.07995 * 119.96261 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47520 * 209.99907 * 13 12 11 37 37 H 1.09003 * 109.47278 * 329.99479 * 13 12 11 38 38 H 0.97000 * 119.99995 * 180.02562 * 17 16 14 39 39 H 1.08003 * 119.96240 * 179.72345 * 22 12 11 40 40 H 1.07997 * 120.03521 * 180.25438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2117 2.2683 -0.8042 6 6 3.4867 3.2998 -1.5612 7 8 2.3655 3.6275 -1.2223 8 7 4.0647 3.8820 -2.6306 9 6 3.4352 4.9562 -3.2672 10 6 3.5571 5.1193 -4.6412 11 6 2.9336 6.1810 -5.2669 12 6 2.1891 7.0813 -4.5270 13 6 1.5107 8.2389 -5.2131 14 6 0.1248 7.8281 -5.6393 15 1 -0.2291 6.8286 -5.4342 16 6 -0.6908 8.7280 -6.2919 17 7 -0.2596 9.9451 -6.5421 18 14 -2.4084 8.2186 -6.8209 19 1 -2.6506 6.8082 -6.4241 20 1 -3.4096 9.0962 -6.1631 21 1 -2.5307 8.3465 -8.2952 22 6 2.0705 6.9250 -3.1582 23 6 2.6863 5.8620 -2.5270 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 4.0872 0.7723 0.6514 32 1 5.2838 2.1812 -0.9007 33 1 4.9173 3.5559 -2.9586 34 1 4.1389 4.4169 -5.2194 35 1 3.0283 6.3086 -6.3351 36 1 1.4443 9.0812 -4.5244 37 1 2.0889 8.5312 -6.0897 38 1 -0.8336 10.5782 -7.0009 39 1 1.4920 7.6324 -2.5826 40 1 2.5899 5.7382 -1.4585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:06 Heat of formation + Delta-G solvation = -10.492709 kcal Electronic energy + Delta-G solvation = -19766.731597 eV Core-core repulsion = 16739.114309 eV Total energy + Delta-G solvation = -3027.617288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38062 -38.33573 -36.00134 -34.72147 -33.04469 -32.52960 -30.46046 -30.26470 -27.47677 -26.31535 -23.74111 -22.43317 -22.12856 -21.51109 -20.18438 -19.50155 -17.16089 -16.97538 -16.27893 -15.83140 -15.03618 -14.85476 -14.58864 -14.22051 -14.16653 -13.68690 -13.34074 -13.07916 -12.92329 -12.72669 -12.58996 -12.23284 -11.93730 -11.60137 -11.35270 -11.23228 -11.20942 -10.86455 -10.74420 -10.55246 -10.30140 -10.05117 -9.60835 -9.55188 -9.37212 -9.16059 -8.39806 -8.27028 -7.33602 -6.01117 -4.04801 1.16679 2.03194 2.09829 3.16269 3.27803 3.32042 3.39594 3.45843 4.40973 4.52434 4.58997 4.69230 4.87234 4.92787 5.13940 5.27009 5.33017 5.45262 5.50211 5.59040 5.62615 5.71467 5.86439 5.95273 5.96579 6.08129 6.11344 6.13237 6.20748 6.22359 6.45700 6.66561 6.83009 6.94831 7.18601 7.22583 7.53349 7.57534 7.73486 7.88734 7.95152 8.24542 8.35863 9.01082 9.59092 11.08453 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.003676 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.308925 B = 7616.105763 C = 8676.038345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.056 4.056 5 C -0.226 4.226 6 C 0.537 3.463 7 O -0.515 6.515 8 N -0.666 5.666 9 C 0.105 3.895 10 C -0.144 4.144 11 C -0.108 4.108 12 C -0.043 4.043 13 C 0.048 3.952 14 C -0.510 4.510 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.108 4.108 23 C -0.117 4.117 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.405 0.595 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.121 0.879 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.523 -17.671 11.526 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.159 4.159 4 C -0.075 4.075 5 C -0.247 4.247 6 C 0.328 3.672 7 O -0.393 6.393 8 N -0.310 5.310 9 C 0.013 3.987 10 C -0.164 4.164 11 C -0.127 4.127 12 C -0.043 4.043 13 C 0.011 3.989 14 C -0.548 4.548 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.127 4.127 23 C -0.137 4.137 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.240 0.760 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.693 -17.293 11.726 23.032 hybrid contribution -0.375 -0.443 -0.507 0.770 sum 9.318 -17.736 11.220 22.963 Atomic orbital electron populations 1.21759 0.95536 1.01390 1.02337 1.21527 0.96268 0.96497 1.01554 1.21356 0.91613 0.97041 1.05856 1.23749 0.97062 0.94157 0.92554 1.22568 1.00392 0.99494 1.02255 1.18725 0.85842 0.82305 0.80354 1.90768 1.18284 1.62572 1.67697 1.43346 1.24172 1.32748 1.30745 1.17515 1.00473 0.89286 0.91424 1.20750 1.03645 1.00060 0.91987 1.20884 0.97624 0.94396 0.99773 1.20705 0.92997 0.97370 0.93243 1.18355 0.94794 0.90368 0.95398 1.21126 0.98119 0.98573 1.36966 0.92389 1.25011 0.98534 0.94922 0.95913 1.69971 1.36791 1.04757 1.41912 0.86490 0.84280 0.78807 0.78229 1.19646 1.20938 1.20960 1.20994 0.99339 0.97553 0.94777 1.20955 0.99187 0.93788 0.99743 0.92639 0.92382 0.92899 0.92224 0.92353 0.90017 0.87503 0.85842 0.85317 0.76020 0.86847 0.86037 0.95308 0.95320 0.92939 0.86114 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 3 C -0.12 -1.28 4.66 -27.88 -0.13 -1.41 16 4 C -0.06 -0.48 9.58 -36.12 -0.35 -0.83 16 5 C -0.23 -2.12 10.02 -37.82 -0.38 -2.49 16 6 C 0.54 7.22 7.09 -12.68 -0.09 7.13 16 7 O -0.52 -8.80 11.33 5.26 0.06 -8.74 16 8 N -0.67 -8.57 5.33 -10.94 -0.06 -8.63 16 9 C 0.11 1.76 6.26 -83.72 -0.52 1.24 16 10 C -0.14 -2.40 9.97 -39.38 -0.39 -2.79 16 11 C -0.11 -2.11 9.69 -39.61 -0.38 -2.50 16 12 C -0.04 -0.95 5.07 -104.59 -0.53 -1.48 16 13 C 0.05 1.24 5.10 -29.03 -0.15 1.09 16 14 C -0.51 -14.55 9.09 -34.44 -0.31 -14.87 16 15 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.11 -2.24 9.69 -39.61 -0.38 -2.62 16 23 C -0.12 -2.19 8.65 -39.39 -0.34 -2.53 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.11 1.47 5.17 -51.93 -0.27 1.20 16 31 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.40 3.66 8.80 -40.82 -0.36 3.30 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.12 2.45 8.06 -52.48 -0.42 2.02 16 40 H 0.12 2.25 6.49 -52.49 -0.34 1.91 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -32.35 338.80 -9.03 -41.37 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.00 Total: 2.62 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -3.85 Total: -22.68 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.68 Total: -34.60 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.06 Total: -8.74 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.35 -9.03 -41.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.881 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds