Wall clock time and date at job start Mon Mar 30 2020 01:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46756 * 2 1 4 4 C 1.50704 * 109.46790 * 180.02562 * 3 2 1 5 5 C 1.33016 * 119.99717 * 135.78099 * 4 3 2 6 6 C 1.47060 * 120.00227 * 7.96044 * 5 4 3 7 7 O 1.21623 * 120.00112 * 18.38334 * 6 5 4 8 8 N 1.34779 * 119.99833 * 198.37661 * 6 5 4 9 9 C 1.39839 * 119.99682 * 186.56575 * 8 6 5 10 10 C 1.38898 * 120.06818 * 213.81900 * 9 8 6 11 11 C 1.38111 * 119.92361 * 179.97438 * 10 9 8 12 12 C 1.38288 * 120.07114 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.92506 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47293 * 89.99837 * 13 12 11 15 15 H 1.07998 * 119.99475 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99895 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00352 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99884 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47101 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47255 * 119.99909 * 18 16 14 21 21 H 1.48494 * 109.47438 * 239.99974 * 18 16 14 22 22 C 1.38280 * 120.14639 * 0.24994 * 12 11 10 23 23 C 1.38113 * 120.07537 * 359.45104 * 22 12 11 24 24 H 1.08999 * 109.47235 * 299.99837 * 1 2 3 25 25 H 1.08999 * 109.47151 * 60.00177 * 1 2 3 26 26 H 1.09000 * 109.46557 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47190 * 240.00747 * 2 1 3 28 28 H 1.08997 * 109.47610 * 120.00059 * 2 1 3 29 29 H 1.08999 * 109.47116 * 60.00090 * 3 2 1 30 30 H 1.08999 * 109.47146 * 299.99826 * 3 2 1 31 31 H 1.07994 * 119.99901 * 315.77138 * 4 3 2 32 32 H 1.08001 * 119.99922 * 187.96771 * 5 4 3 33 33 H 0.96997 * 120.00152 * 6.56801 * 8 6 5 34 34 H 1.07994 * 120.03980 * 359.95644 * 10 9 8 35 35 H 1.07995 * 119.96261 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47520 * 209.99907 * 13 12 11 37 37 H 1.09003 * 109.47278 * 329.99479 * 13 12 11 38 38 H 0.97000 * 119.99995 * 180.02562 * 17 16 14 39 39 H 1.08003 * 119.96240 * 179.72345 * 22 12 11 40 40 H 1.07997 * 120.03521 * 180.25438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2117 2.2683 -0.8042 6 6 3.4867 3.2998 -1.5612 7 8 2.3655 3.6275 -1.2223 8 7 4.0647 3.8820 -2.6306 9 6 3.4352 4.9562 -3.2672 10 6 3.5571 5.1193 -4.6412 11 6 2.9336 6.1810 -5.2669 12 6 2.1891 7.0813 -4.5270 13 6 1.5107 8.2389 -5.2131 14 6 0.1248 7.8281 -5.6393 15 1 -0.2291 6.8286 -5.4342 16 6 -0.6908 8.7280 -6.2919 17 7 -0.2596 9.9451 -6.5421 18 14 -2.4084 8.2186 -6.8209 19 1 -2.6506 6.8082 -6.4241 20 1 -3.4096 9.0962 -6.1631 21 1 -2.5307 8.3465 -8.2952 22 6 2.0705 6.9250 -3.1582 23 6 2.6863 5.8620 -2.5270 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 4.0872 0.7723 0.6514 32 1 5.2838 2.1812 -0.9007 33 1 4.9173 3.5559 -2.9586 34 1 4.1389 4.4169 -5.2194 35 1 3.0283 6.3086 -6.3351 36 1 1.4443 9.0812 -4.5244 37 1 2.0889 8.5312 -6.0897 38 1 -0.8336 10.5782 -7.0009 39 1 1.4920 7.6324 -2.5826 40 1 2.5899 5.7382 -1.4585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928401148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:06 Heat of formation + Delta-G solvation = -28.860627 kcal Electronic energy + Delta-G solvation = -19767.528090 eV Core-core repulsion = 16739.114309 eV Total energy + Delta-G solvation = -3028.413781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54428 -39.72366 -36.93750 -36.00665 -34.97866 -33.37536 -32.14023 -31.78190 -28.84090 -27.60336 -25.37646 -23.93072 -23.42614 -22.28500 -21.69111 -20.51203 -18.55254 -18.38512 -17.89435 -16.90090 -16.67007 -16.13350 -15.92944 -15.46755 -15.28646 -14.88699 -14.55716 -14.36366 -14.21651 -14.04063 -13.72974 -13.70410 -13.36786 -13.21375 -12.91434 -12.62824 -12.48091 -12.28092 -11.97276 -11.89917 -11.65815 -11.58172 -11.50253 -11.04325 -10.62058 -10.45337 -10.29857 -9.77401 -8.83863 -8.19722 -6.34466 0.23359 0.55507 0.72445 1.37554 1.38337 1.52119 2.16613 2.23598 2.39429 3.01249 3.08934 3.75655 3.94717 4.07545 4.13478 4.16068 4.22359 4.37235 4.53174 4.59129 4.61834 4.65085 4.73601 4.75739 4.95086 5.02840 5.10417 5.16504 5.25550 5.31699 5.33512 5.38637 5.41674 5.45782 5.51887 5.61019 5.71777 5.75038 6.07453 6.11992 6.25028 6.55747 6.78160 7.23436 7.34009 8.87971 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.003676 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.308925 B = 7616.105763 C = 8676.038345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.126 4.126 4 C -0.044 4.044 5 C -0.230 4.230 6 C 0.529 3.471 7 O -0.559 6.559 8 N -0.655 5.655 9 C 0.121 3.879 10 C -0.130 4.130 11 C -0.113 4.113 12 C -0.076 4.076 13 C 0.058 3.942 14 C -0.529 4.529 15 H 0.050 0.950 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.272 1.272 22 C -0.121 4.121 23 C -0.124 4.124 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.427 0.573 34 H 0.158 0.842 35 H 0.126 0.874 36 H 0.001 0.999 37 H 0.009 0.991 38 H 0.266 0.734 39 H 0.109 0.891 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.985 -20.985 12.121 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.163 4.163 4 C -0.063 4.063 5 C -0.250 4.250 6 C 0.322 3.678 7 O -0.439 6.439 8 N -0.301 5.301 9 C 0.027 3.973 10 C -0.150 4.150 11 C -0.132 4.132 12 C -0.076 4.076 13 C 0.021 3.979 14 C -0.567 4.567 15 H 0.068 0.932 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.789 3.211 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.197 1.197 22 C -0.139 4.139 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.182 0.818 32 H 0.187 0.813 33 H 0.266 0.734 34 H 0.176 0.824 35 H 0.144 0.856 36 H 0.019 0.981 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.199 -20.630 12.320 26.511 hybrid contribution -0.797 0.513 -0.602 1.123 sum 10.401 -20.118 11.718 25.500 Atomic orbital electron populations 1.21793 0.96303 1.01978 1.01281 1.21499 0.95624 0.95342 1.02799 1.21285 0.93525 0.97819 1.03673 1.24049 0.95837 0.94226 0.92225 1.22687 1.01969 0.98400 1.01949 1.19573 0.85499 0.82707 0.80053 1.90777 1.20435 1.64053 1.68651 1.43308 1.24850 1.31421 1.30495 1.17613 0.98777 0.89274 0.91631 1.21053 1.02614 0.99322 0.92042 1.20988 0.97445 0.94726 1.00033 1.20397 0.95595 0.97715 0.93917 1.18085 0.94315 0.91277 0.94221 1.21409 0.99575 0.98358 1.37351 0.93183 1.25905 1.02802 0.94826 0.95764 1.70081 1.38488 1.05809 1.42496 0.85407 0.79002 0.78448 0.78264 1.19362 1.20132 1.19706 1.20919 1.00184 0.98468 0.94356 1.20964 0.99762 0.93799 0.99888 0.92778 0.94422 0.91457 0.91869 0.90012 0.90959 0.91107 0.81797 0.81320 0.73351 0.82417 0.85581 0.98056 0.97264 0.92503 0.87251 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.91 71.98 0.71 -1.94 16 2 C -0.12 -1.72 5.92 30.60 0.18 -1.54 16 3 C -0.13 -2.47 4.66 29.85 0.14 -2.33 16 4 C -0.04 -0.60 9.58 24.52 0.23 -0.37 16 5 C -0.23 -3.43 10.02 23.42 0.23 -3.20 16 6 C 0.53 13.17 7.09 86.56 0.61 13.79 16 7 O -0.56 -19.04 11.33 -4.11 -0.05 -19.09 16 8 N -0.65 -15.00 5.33 -306.78 -1.64 -16.63 16 9 C 0.12 3.86 6.26 38.18 0.24 4.09 16 10 C -0.13 -4.04 9.97 22.40 0.22 -3.82 16 11 C -0.11 -4.43 9.69 22.25 0.22 -4.21 16 12 C -0.08 -3.51 5.07 -19.84 -0.10 -3.61 16 13 C 0.06 3.21 5.10 29.10 0.15 3.36 16 14 C -0.53 -31.44 9.09 25.60 0.23 -31.20 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 16 C 0.01 0.30 5.46 84.65 0.46 0.77 16 17 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 18 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 C -0.12 -5.25 9.69 22.25 0.22 -5.03 16 23 C -0.12 -4.71 8.65 22.40 0.19 -4.52 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.96 5.17 -2.39 -0.01 1.94 16 31 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.43 5.92 8.80 -92.71 -0.82 5.11 16 34 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 36 H 0.00 0.07 8.08 -2.39 -0.02 0.05 16 37 H 0.01 0.52 8.08 -2.39 -0.02 0.50 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 40 H 0.12 4.60 6.49 -2.91 -0.02 4.58 16 Total: -1.00 -74.21 338.80 4.78 -69.42 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.21 Total: 15.03 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 3.95 Total: -39.76 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -1.35 Total: -73.37 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.21 4.78 -69.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.560 kcal (2) G-P(sol) polarization free energy of solvation -74.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds