Wall clock time and date at job start Mon Mar 30 2020 01:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33020 * 120.00162 * 2 1 4 4 C 1.50697 * 119.99919 * 179.72160 * 3 2 1 5 5 C 1.53001 * 109.46809 * 95.00118 * 4 3 2 6 6 C 1.47062 * 119.99755 * 359.72460 * 3 2 1 7 7 O 1.21620 * 120.00212 * 359.97438 * 6 3 2 8 8 N 1.34773 * 119.99833 * 179.97438 * 6 3 2 9 9 C 1.39835 * 120.00021 * 174.72673 * 8 6 3 10 10 C 1.38890 * 120.06985 * 326.51890 * 9 8 6 11 11 C 1.38114 * 119.92198 * 179.72490 * 10 9 8 12 12 C 1.38282 * 120.07329 * 0.54710 * 11 10 9 13 13 C 1.50699 * 119.92827 * 179.70476 * 12 11 10 14 14 C 1.50695 * 109.47158 * 270.02238 * 13 12 11 15 15 H 1.08002 * 120.00182 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99961 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00157 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99579 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47312 * 60.00273 * 18 16 14 20 20 H 1.48503 * 109.46689 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47170 * 299.99645 * 18 16 14 22 22 C 1.38286 * 120.14556 * 359.72711 * 12 11 10 23 23 C 1.38108 * 120.07266 * 359.97438 * 22 12 11 24 24 H 1.08996 * 109.46745 * 60.27654 * 1 2 3 25 25 H 1.09001 * 109.47086 * 180.26907 * 1 2 3 26 26 H 1.08996 * 109.47036 * 300.27999 * 1 2 3 27 27 H 1.08008 * 119.99964 * 179.72622 * 2 1 3 28 28 H 1.08999 * 109.47414 * 215.00138 * 4 3 2 29 29 H 1.08995 * 109.47311 * 335.00621 * 4 3 2 30 30 H 1.09002 * 109.47223 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.47637 * 299.99650 * 5 4 3 32 32 H 1.08999 * 109.47222 * 60.00357 * 5 4 3 33 33 H 0.97006 * 119.99843 * 354.72645 * 8 6 3 34 34 H 1.07996 * 120.04314 * 359.97259 * 10 9 8 35 35 H 1.08005 * 119.96324 * 180.27483 * 11 10 9 36 36 H 1.08998 * 109.46932 * 30.02468 * 13 12 11 37 37 H 1.09000 * 109.47003 * 150.02243 * 13 12 11 38 38 H 0.96995 * 120.00253 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.96345 * 180.02562 * 22 12 11 40 40 H 1.07999 * 120.03699 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1520 0.0000 4 6 3.6791 1.1519 0.0063 5 6 4.1951 1.2742 -1.4288 6 6 1.4368 2.4255 -0.0061 7 8 0.2206 2.4256 -0.0117 8 7 2.1107 3.5927 -0.0056 9 6 1.4165 4.8009 -0.1227 10 6 0.2607 4.8679 -0.8898 11 6 -0.4257 6.0614 -0.9988 12 6 0.0429 7.1916 -0.3543 13 6 -0.7050 8.4938 -0.4808 14 6 -0.1820 9.2601 -1.6683 15 1 0.6123 8.8455 -2.2714 16 6 -0.7182 10.4902 -1.9855 17 7 -1.6856 10.9949 -1.2515 18 14 -0.0702 11.4397 -3.4580 19 1 -0.2649 10.6348 -4.6907 20 1 -0.8071 12.7230 -3.5826 21 1 1.3767 11.7165 -3.2708 22 6 1.1965 7.1296 0.4056 23 6 1.8843 5.9378 0.5237 24 1 -0.3633 0.5095 -0.8924 25 1 -0.3633 -1.0277 0.0048 26 1 -0.3633 0.5182 0.8874 27 1 2.0471 -0.9354 0.0045 28 1 4.0400 1.9951 0.5953 29 1 4.0406 0.2216 0.4443 30 1 5.2851 1.2746 -1.4243 31 1 3.8342 0.4309 -2.0178 32 1 3.8337 2.2045 -1.8669 33 1 3.0773 3.5946 0.0760 34 1 -0.1032 3.9868 -1.3974 35 1 -1.3271 6.1132 -1.5916 36 1 -1.7671 8.2909 -0.6184 37 1 -0.5621 9.0842 0.4242 38 1 -2.0631 11.8600 -1.4748 39 1 1.5597 8.0140 0.9081 40 1 2.7854 5.8901 1.1170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:13 Heat of formation + Delta-G solvation = -12.522538 kcal Electronic energy + Delta-G solvation = -20117.164361 eV Core-core repulsion = 17089.459053 eV Total energy + Delta-G solvation = -3027.705308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50268 -38.36169 -35.82931 -35.05255 -33.03964 -31.98365 -30.43929 -30.26441 -27.67887 -26.42366 -23.74676 -22.95283 -22.35097 -22.07196 -20.17347 -19.26061 -17.19142 -16.53717 -16.27840 -15.34212 -14.96120 -14.81777 -14.69461 -14.20636 -13.96043 -13.73570 -13.28018 -12.97687 -12.90870 -12.79445 -12.51781 -12.44846 -12.28102 -11.95351 -11.49119 -11.34910 -11.26157 -11.21543 -10.77194 -10.59057 -10.32678 -9.94072 -9.68583 -9.38541 -9.29710 -9.18893 -8.40064 -8.26081 -7.32968 -6.01447 -4.05632 1.15407 2.03574 2.10645 3.21959 3.23284 3.33369 3.37403 3.40687 4.39764 4.43695 4.50393 4.60175 4.80393 5.00935 5.07463 5.17486 5.32311 5.42914 5.46322 5.56163 5.59367 5.65870 5.72130 5.82434 5.94196 5.97580 6.10416 6.13686 6.22667 6.27038 6.36829 6.67166 6.83688 6.95284 7.19222 7.23356 7.53555 7.58285 7.73987 7.89477 7.94162 8.24722 8.35056 8.99490 9.57904 11.08099 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.003461 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.311233 B = 8088.401363 C = 8379.996016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.064 4.064 3 C -0.194 4.194 4 C -0.084 4.084 5 C -0.152 4.152 6 C 0.546 3.454 7 O -0.519 6.519 8 N -0.665 5.665 9 C 0.107 3.893 10 C -0.117 4.117 11 C -0.108 4.108 12 C -0.043 4.043 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.108 4.108 23 C -0.145 4.145 24 H 0.082 0.918 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.404 0.596 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.122 0.878 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.921 -20.962 3.027 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.084 4.084 3 C -0.197 4.197 4 C -0.122 4.122 5 C -0.209 4.209 6 C 0.336 3.664 7 O -0.397 6.397 8 N -0.310 5.310 9 C 0.014 3.986 10 C -0.137 4.137 11 C -0.126 4.126 12 C -0.044 4.044 13 C 0.011 3.989 14 C -0.550 4.550 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.126 4.126 23 C -0.165 4.165 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.141 0.859 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.240 0.760 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.953 -20.843 3.025 23.295 hybrid contribution 0.947 0.604 -0.756 1.354 sum 10.900 -20.239 2.269 23.099 Atomic orbital electron populations 1.21061 0.91594 1.00991 1.04426 1.23645 0.97304 0.96506 0.90910 1.21436 0.95992 0.93055 1.09207 1.20521 0.90685 1.02986 0.98003 1.21809 1.00853 1.02573 0.95693 1.18441 0.87394 0.83873 0.76673 1.90813 1.13377 1.87201 1.48264 1.43360 1.10344 1.04569 1.72749 1.17511 0.95972 0.84906 1.00181 1.20972 0.95566 0.98338 0.98806 1.20994 1.00155 0.91680 0.99809 1.20704 0.94383 0.96795 0.92491 1.18341 0.95043 0.87755 0.97720 1.21038 1.19619 1.02608 1.11722 0.92520 1.25015 0.95022 0.97492 0.96815 1.69947 1.25821 1.18543 1.39040 0.86599 0.78990 0.79075 0.83023 1.20176 1.21255 1.20191 1.20878 0.95420 0.96491 0.99840 1.20745 1.01473 0.92854 1.01465 0.89921 0.93032 0.89913 0.85866 0.91203 0.90610 0.92131 0.92401 0.92309 0.76045 0.85935 0.86131 0.95315 0.95338 0.92799 0.86042 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 8.45 36.01 0.30 -0.96 16 2 C -0.06 -0.57 9.94 -36.12 -0.36 -0.93 16 3 C -0.19 -1.92 5.25 -102.86 -0.54 -2.46 16 4 C -0.08 -0.59 5.60 -27.88 -0.16 -0.75 16 5 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 6 C 0.55 7.47 7.45 -12.68 -0.09 7.38 16 7 O -0.52 -8.73 10.76 5.26 0.06 -8.67 16 8 N -0.67 -8.85 5.29 -10.95 -0.06 -8.91 16 9 C 0.11 1.81 6.27 -83.72 -0.53 1.28 16 10 C -0.12 -2.21 8.65 -39.39 -0.34 -2.55 16 11 C -0.11 -2.24 9.69 -39.61 -0.38 -2.63 16 12 C -0.04 -0.96 5.07 -104.59 -0.53 -1.49 16 13 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 14 C -0.51 -14.46 9.09 -34.44 -0.31 -14.77 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 23 C -0.15 -2.44 9.96 -39.39 -0.39 -2.83 16 24 H 0.08 0.99 7.22 -51.93 -0.37 0.61 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.99 7.22 -51.93 -0.37 0.62 16 27 H 0.12 0.74 8.02 -52.48 -0.42 0.32 16 28 H 0.07 0.45 6.88 -51.93 -0.36 0.09 16 29 H 0.08 0.42 8.01 -51.93 -0.42 0.00 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.40 4.08 7.00 -40.82 -0.29 3.80 16 34 H 0.12 2.28 6.43 -52.49 -0.34 1.94 16 35 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 36 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -31.84 335.52 -8.73 -40.57 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.91 Total: 2.46 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -3.59 Total: -21.23 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.68 Total: -34.82 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.06 Total: -8.67 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.84 -8.73 -40.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.043 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds