Wall clock time and date at job start Mon Mar 30 2020 01:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33020 * 120.00162 * 2 1 4 4 C 1.50697 * 119.99919 * 179.72160 * 3 2 1 5 5 C 1.53001 * 109.46809 * 95.00118 * 4 3 2 6 6 C 1.47062 * 119.99755 * 359.72460 * 3 2 1 7 7 O 1.21620 * 120.00212 * 359.97438 * 6 3 2 8 8 N 1.34773 * 119.99833 * 179.97438 * 6 3 2 9 9 C 1.39835 * 120.00021 * 174.72673 * 8 6 3 10 10 C 1.38890 * 120.06985 * 326.51890 * 9 8 6 11 11 C 1.38114 * 119.92198 * 179.72490 * 10 9 8 12 12 C 1.38282 * 120.07329 * 0.54710 * 11 10 9 13 13 C 1.50699 * 119.92827 * 179.70476 * 12 11 10 14 14 C 1.50695 * 109.47158 * 270.02238 * 13 12 11 15 15 H 1.08002 * 120.00182 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99961 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00157 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99579 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47312 * 60.00273 * 18 16 14 20 20 H 1.48503 * 109.46689 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47170 * 299.99645 * 18 16 14 22 22 C 1.38286 * 120.14556 * 359.72711 * 12 11 10 23 23 C 1.38108 * 120.07266 * 359.97438 * 22 12 11 24 24 H 1.08996 * 109.46745 * 60.27654 * 1 2 3 25 25 H 1.09001 * 109.47086 * 180.26907 * 1 2 3 26 26 H 1.08996 * 109.47036 * 300.27999 * 1 2 3 27 27 H 1.08008 * 119.99964 * 179.72622 * 2 1 3 28 28 H 1.08999 * 109.47414 * 215.00138 * 4 3 2 29 29 H 1.08995 * 109.47311 * 335.00621 * 4 3 2 30 30 H 1.09002 * 109.47223 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.47637 * 299.99650 * 5 4 3 32 32 H 1.08999 * 109.47222 * 60.00357 * 5 4 3 33 33 H 0.97006 * 119.99843 * 354.72645 * 8 6 3 34 34 H 1.07996 * 120.04314 * 359.97259 * 10 9 8 35 35 H 1.08005 * 119.96324 * 180.27483 * 11 10 9 36 36 H 1.08998 * 109.46932 * 30.02468 * 13 12 11 37 37 H 1.09000 * 109.47003 * 150.02243 * 13 12 11 38 38 H 0.96995 * 120.00253 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.96345 * 180.02562 * 22 12 11 40 40 H 1.07999 * 120.03699 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1520 0.0000 4 6 3.6791 1.1519 0.0063 5 6 4.1951 1.2742 -1.4288 6 6 1.4368 2.4255 -0.0061 7 8 0.2206 2.4256 -0.0117 8 7 2.1107 3.5927 -0.0056 9 6 1.4165 4.8009 -0.1227 10 6 0.2607 4.8679 -0.8898 11 6 -0.4257 6.0614 -0.9988 12 6 0.0429 7.1916 -0.3543 13 6 -0.7050 8.4938 -0.4808 14 6 -0.1820 9.2601 -1.6683 15 1 0.6123 8.8455 -2.2714 16 6 -0.7182 10.4902 -1.9855 17 7 -1.6856 10.9949 -1.2515 18 14 -0.0702 11.4397 -3.4580 19 1 -0.2649 10.6348 -4.6907 20 1 -0.8071 12.7230 -3.5826 21 1 1.3767 11.7165 -3.2708 22 6 1.1965 7.1296 0.4056 23 6 1.8843 5.9378 0.5237 24 1 -0.3633 0.5095 -0.8924 25 1 -0.3633 -1.0277 0.0048 26 1 -0.3633 0.5182 0.8874 27 1 2.0471 -0.9354 0.0045 28 1 4.0400 1.9951 0.5953 29 1 4.0406 0.2216 0.4443 30 1 5.2851 1.2746 -1.4243 31 1 3.8342 0.4309 -2.0178 32 1 3.8337 2.2045 -1.8669 33 1 3.0773 3.5946 0.0760 34 1 -0.1032 3.9868 -1.3974 35 1 -1.3271 6.1132 -1.5916 36 1 -1.7671 8.2909 -0.6184 37 1 -0.5621 9.0842 0.4242 38 1 -2.0631 11.8600 -1.4748 39 1 1.5597 8.0140 0.9081 40 1 2.7854 5.8901 1.1170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928401859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:12 Heat of formation + Delta-G solvation = -30.222323 kcal Electronic energy + Delta-G solvation = -20117.931881 eV Core-core repulsion = 17089.459053 eV Total energy + Delta-G solvation = -3028.472828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66259 -39.77077 -36.69205 -36.36722 -35.01013 -32.81738 -32.06833 -31.79045 -28.90923 -27.80506 -25.40386 -23.95126 -23.47549 -23.40694 -21.70543 -20.32078 -18.54369 -18.40972 -17.46825 -16.85007 -16.41478 -15.98064 -15.73191 -15.55560 -15.19407 -14.68493 -14.54252 -14.35232 -14.19979 -14.04799 -13.74517 -13.57898 -13.27316 -13.17790 -13.06864 -13.00305 -12.59528 -12.45395 -12.08726 -11.98912 -11.77771 -11.65514 -11.50503 -11.02295 -10.60409 -10.53535 -10.05140 -9.78093 -8.85060 -8.18181 -6.33377 0.20179 0.54758 0.68832 1.39839 1.43001 1.51236 2.12629 2.20764 2.40553 3.00078 3.10795 3.67853 3.81614 4.03949 4.12541 4.28155 4.36102 4.38922 4.51257 4.57171 4.61583 4.63898 4.72747 4.83955 4.85833 5.03662 5.09536 5.14082 5.16939 5.31169 5.33310 5.40648 5.42558 5.48405 5.52155 5.61249 5.64863 5.75150 6.06693 6.11603 6.24392 6.50395 6.79064 7.18053 7.35091 8.89652 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.003461 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.311233 B = 8088.401363 C = 8379.996016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.051 4.051 3 C -0.203 4.203 4 C -0.079 4.079 5 C -0.152 4.152 6 C 0.538 3.462 7 O -0.557 6.557 8 N -0.655 5.655 9 C 0.121 3.879 10 C -0.123 4.123 11 C -0.120 4.120 12 C -0.075 4.075 13 C 0.058 3.942 14 C -0.530 4.530 15 H 0.056 0.944 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.112 4.112 23 C -0.131 4.131 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.163 0.837 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.422 0.578 34 H 0.122 0.878 35 H 0.110 0.890 36 H -0.002 1.002 37 H 0.007 0.993 38 H 0.266 0.734 39 H 0.127 0.873 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.128 -23.055 2.929 27.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.070 4.070 3 C -0.206 4.206 4 C -0.117 4.117 5 C -0.209 4.209 6 C 0.330 3.670 7 O -0.437 6.437 8 N -0.302 5.302 9 C 0.028 3.972 10 C -0.143 4.143 11 C -0.138 4.138 12 C -0.076 4.076 13 C 0.021 3.979 14 C -0.567 4.567 15 H 0.074 0.926 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.791 3.209 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.189 1.189 22 C -0.131 4.131 23 C -0.151 4.151 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.181 0.819 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.262 0.738 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.017 0.983 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.145 0.855 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 13.203 -22.961 2.934 26.648 hybrid contribution -0.082 1.102 -0.675 1.295 sum 13.120 -21.859 2.258 25.594 Atomic orbital electron populations 1.21014 0.93112 1.01872 1.02250 1.23973 0.96418 0.97816 0.88800 1.21504 0.97583 0.91086 1.10459 1.20572 0.88149 1.04696 0.98240 1.21814 1.01833 1.01671 0.95578 1.19221 0.87238 0.85038 0.75471 1.90813 1.15292 1.87765 1.49834 1.43318 1.11201 1.03271 1.72375 1.17610 0.94973 0.86462 0.98203 1.20972 0.96514 0.97304 0.99554 1.20915 1.00380 0.92304 1.00243 1.20399 0.96140 0.95366 0.95684 1.18078 0.93869 0.89682 0.96268 1.21364 1.19712 1.03249 1.12412 0.92616 1.25959 0.95107 0.98511 0.99901 1.70078 1.27056 1.19074 1.40904 0.85470 0.78796 0.77549 0.79065 1.19448 1.20559 1.18945 1.20978 0.94691 0.98087 0.99297 1.21044 1.02155 0.91206 1.00683 0.92270 0.90535 0.92151 0.81932 0.90367 0.88194 0.90567 0.92385 0.94045 0.73812 0.85999 0.87233 0.98328 0.97508 0.92548 0.85524 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.45 71.24 0.60 -1.83 16 2 C -0.05 -0.75 9.94 24.52 0.24 -0.50 16 3 C -0.20 -3.46 5.25 -18.71 -0.10 -3.56 16 4 C -0.08 -0.79 5.60 29.85 0.17 -0.62 16 5 C -0.15 -1.58 9.89 71.98 0.71 -0.87 16 6 C 0.54 13.94 7.45 86.56 0.65 14.59 16 7 O -0.56 -18.79 10.76 -4.09 -0.04 -18.83 16 8 N -0.66 -15.95 5.29 -306.80 -1.62 -17.57 16 9 C 0.12 3.94 6.27 38.18 0.24 4.18 16 10 C -0.12 -4.73 8.65 22.40 0.19 -4.53 16 11 C -0.12 -5.23 9.69 22.25 0.22 -5.02 16 12 C -0.08 -3.50 5.07 -19.84 -0.10 -3.60 16 13 C 0.06 3.22 5.10 29.10 0.15 3.37 16 14 C -0.53 -30.96 9.09 25.60 0.23 -30.73 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 16 C 0.00 0.19 5.46 84.66 0.46 0.65 16 17 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 18 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 C -0.11 -4.39 9.69 22.25 0.22 -4.17 16 23 C -0.13 -4.11 9.96 22.40 0.22 -3.88 16 24 H 0.06 1.43 7.22 -2.39 -0.02 1.41 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.44 7.22 -2.39 -0.02 1.43 16 27 H 0.16 1.14 8.02 -2.91 -0.02 1.12 16 28 H 0.08 0.66 6.88 -2.39 -0.02 0.64 16 29 H 0.10 0.58 8.01 -2.39 -0.02 0.56 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.42 7.09 7.00 -92.70 -0.65 6.44 16 34 H 0.12 4.66 6.43 -2.91 -0.02 4.64 16 35 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 36 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 37 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 40 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -72.45 335.52 5.13 -67.32 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.38 Total: 15.64 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 4.10 Total: -36.53 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.34 Total: -74.48 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.04 Total: -18.83 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -72.45 5.13 -67.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.096 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds