Wall clock time and date at job start Mon Mar 30 2020 01:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47502 * 2 1 4 4 C 1.50702 * 120.00130 * 91.04838 * 3 2 1 5 5 C 1.33016 * 119.99951 * 271.04780 * 3 2 1 6 6 C 1.47060 * 120.00055 * 8.33265 * 5 3 2 7 7 O 1.21626 * 119.99849 * 6.88534 * 6 5 3 8 8 N 1.34777 * 120.00453 * 186.88587 * 6 5 3 9 9 C 1.39833 * 119.99997 * 184.29977 * 8 6 5 10 10 C 1.38891 * 120.07541 * 35.38229 * 9 8 6 11 11 C 1.38105 * 119.92852 * 180.29783 * 10 9 8 12 12 C 1.38292 * 120.07031 * 359.44159 * 11 10 9 13 13 C 1.50693 * 119.92798 * 180.29819 * 12 11 10 14 14 C 1.50701 * 109.47576 * 270.25867 * 13 12 11 15 15 H 1.08006 * 119.99522 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00201 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00317 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00121 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47029 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47067 * 119.99600 * 18 16 14 21 21 H 1.48498 * 109.47367 * 239.99857 * 18 16 14 22 22 C 1.38288 * 120.14519 * 0.55936 * 12 11 10 23 23 C 1.38111 * 120.07399 * 359.71832 * 22 12 11 24 24 H 1.08994 * 109.47654 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47333 * 300.00974 * 1 2 3 26 26 H 1.09010 * 109.46785 * 60.00212 * 1 2 3 27 27 H 1.08999 * 109.47333 * 239.99026 * 2 1 3 28 28 H 1.09010 * 109.46785 * 119.99788 * 2 1 3 29 29 H 1.09005 * 109.47079 * 270.00102 * 4 3 2 30 30 H 1.09000 * 109.47085 * 30.00086 * 4 3 2 31 31 H 1.09004 * 109.47076 * 150.00257 * 4 3 2 32 32 H 1.08001 * 120.00442 * 188.32987 * 5 3 2 33 33 H 0.96997 * 119.99567 * 4.29536 * 8 6 5 34 34 H 1.08004 * 120.03811 * 0.02562 * 10 9 8 35 35 H 1.07994 * 119.96529 * 179.72056 * 11 10 9 36 36 H 1.09004 * 109.47007 * 30.25967 * 13 12 11 37 37 H 1.09004 * 109.47149 * 150.25212 * 13 12 11 38 38 H 0.97000 * 120.00431 * 180.02562 * 17 16 14 39 39 H 1.08000 * 119.96370 * 179.74569 * 22 12 11 40 40 H 1.07998 * 120.03731 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3061 2.1232 1.3049 5 6 2.2343 2.0548 -1.1518 6 6 1.7972 1.4418 -2.4150 7 8 1.1414 0.4176 -2.3990 8 7 2.1233 2.0148 -3.5905 9 6 1.6328 1.4833 -4.7873 10 6 0.3577 0.9348 -4.8344 11 6 -0.1213 0.4051 -6.0165 12 6 0.6628 0.4309 -7.1554 13 6 0.1344 -0.1419 -8.4451 14 6 0.4921 -1.6034 -8.5296 15 1 1.0470 -2.0707 -7.7295 16 6 0.1118 -2.3438 -9.6288 17 7 -0.5635 -1.7747 -10.6034 18 14 0.5558 -4.1552 -9.7338 19 1 1.3119 -4.5509 -8.5185 20 1 -0.6857 -4.9644 -9.8302 21 1 1.3945 -4.3905 -10.9365 22 6 1.9329 0.9763 -7.1119 23 6 2.4201 1.5025 -5.9315 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.4034 2.6351 1.6383 30 1 2.6072 1.3919 2.0550 31 1 3.1058 2.8507 1.1651 32 1 2.7191 3.0198 -1.1593 33 1 2.6981 2.7960 -3.6063 34 1 -0.2570 0.9185 -3.9465 35 1 -1.1109 -0.0256 -6.0527 36 1 -0.9495 -0.0308 -8.4749 37 1 0.5773 0.3899 -9.2873 38 1 -0.8313 -2.2957 -11.3765 39 1 2.5443 0.9912 -8.0020 40 1 3.4122 1.9279 -5.8981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928402132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:51 Heat of formation + Delta-G solvation = -9.395408 kcal Electronic energy + Delta-G solvation = -20029.396703 eV Core-core repulsion = 17001.826997 eV Total energy + Delta-G solvation = -3027.569706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37981 -38.40020 -36.23891 -34.66402 -33.00488 -31.19711 -30.37401 -30.26496 -28.40234 -26.41092 -24.00204 -23.17931 -22.33233 -21.31935 -20.02271 -18.85637 -17.07944 -16.95645 -16.27089 -15.35504 -15.03384 -14.87026 -14.48998 -14.18923 -14.02547 -13.68555 -13.17763 -12.96481 -12.88422 -12.76112 -12.56037 -12.48376 -12.07850 -11.94975 -11.46337 -11.23114 -11.15441 -10.88500 -10.72147 -10.54348 -10.27967 -9.95789 -9.54605 -9.41721 -9.27663 -9.15290 -8.39431 -8.25232 -7.32461 -6.00685 -4.04359 1.14471 2.04248 2.11403 3.25119 3.31055 3.32308 3.39844 3.46201 4.41664 4.51769 4.53964 4.61396 4.95759 5.14648 5.17815 5.27134 5.33439 5.45960 5.47033 5.51250 5.55265 5.61177 5.84367 5.96803 6.04307 6.14164 6.16681 6.21250 6.23706 6.38771 6.44557 6.68049 6.86285 6.98118 7.19904 7.23861 7.54276 7.61617 7.75294 7.89640 7.95596 8.31486 8.36523 9.01542 9.59524 11.08887 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027039 B = 0.003532 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.281815 B = 7925.356371 C = 8488.371827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 C -0.026 4.026 4 C -0.126 4.126 5 C -0.233 4.233 6 C 0.537 3.463 7 O -0.515 6.515 8 N -0.667 5.667 9 C 0.107 3.893 10 C -0.115 4.115 11 C -0.108 4.108 12 C -0.043 4.043 13 C 0.048 3.952 14 C -0.509 4.509 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.109 4.109 23 C -0.144 4.144 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.404 0.596 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.121 0.879 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.241 10.508 20.851 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 C -0.028 4.028 4 C -0.183 4.183 5 C -0.254 4.254 6 C 0.328 3.672 7 O -0.393 6.393 8 N -0.311 5.311 9 C 0.014 3.986 10 C -0.135 4.135 11 C -0.127 4.127 12 C -0.043 4.043 13 C 0.011 3.989 14 C -0.547 4.547 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.127 4.127 23 C -0.164 4.164 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.143 0.857 33 H 0.238 0.762 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.693 9.759 20.740 23.617 hybrid contribution 0.654 -0.522 -0.187 0.858 sum 6.348 9.237 20.552 23.410 Atomic orbital electron populations 1.21571 0.93993 1.01943 1.01531 1.20950 0.97389 0.92226 1.03256 1.22591 0.90155 0.95728 0.94341 1.21009 1.02423 1.00414 0.94410 1.22320 1.08780 1.02318 0.91969 1.18632 0.80536 0.84054 0.83944 1.90792 1.38513 1.22947 1.87016 1.43312 1.51084 1.31996 1.04753 1.17498 0.93533 1.02375 0.85163 1.20957 0.93875 1.00418 0.98289 1.20988 1.00423 0.99465 0.91823 1.20704 0.93237 0.92825 0.97583 1.18352 0.96696 0.95526 0.88333 1.21128 1.35434 0.93767 1.04418 0.92397 1.25010 0.95143 0.98576 0.95652 1.69968 1.38621 1.36232 1.08633 0.86491 0.78230 0.85065 0.78032 1.19638 1.20937 1.20974 1.20881 0.96070 0.98781 0.96990 1.20763 0.98562 1.04202 0.92918 0.92632 0.93974 0.91265 0.88339 0.92230 0.90191 0.91104 0.91202 0.85657 0.76162 0.86033 0.86160 0.95324 0.95338 0.92943 0.86081 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.37 37.16 0.35 -1.14 16 2 C -0.10 -1.10 5.33 -27.89 -0.15 -1.25 16 3 C -0.03 -0.24 5.36 -101.16 -0.54 -0.79 16 4 C -0.13 -0.76 10.05 36.01 0.36 -0.40 16 5 C -0.23 -2.30 9.63 -37.82 -0.36 -2.66 16 6 C 0.54 7.28 7.32 -12.68 -0.09 7.19 16 7 O -0.51 -8.60 9.10 5.25 0.05 -8.55 16 8 N -0.67 -8.69 5.33 -10.94 -0.06 -8.75 16 9 C 0.11 1.79 6.24 -83.72 -0.52 1.27 16 10 C -0.12 -2.16 8.65 -39.39 -0.34 -2.50 16 11 C -0.11 -2.25 9.69 -39.61 -0.38 -2.63 16 12 C -0.04 -0.96 5.07 -104.59 -0.53 -1.49 16 13 C 0.05 1.25 5.10 -29.04 -0.15 1.10 16 14 C -0.51 -14.58 9.09 -34.44 -0.31 -14.89 16 15 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 C -0.11 -2.14 9.69 -39.61 -0.38 -2.52 16 23 C -0.14 -2.42 9.97 -39.38 -0.39 -2.81 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.93 6.44 -51.92 -0.33 0.59 16 27 H 0.10 1.35 5.91 -51.93 -0.31 1.04 16 28 H 0.06 0.54 8.02 -51.92 -0.42 0.12 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.37 8.03 -51.93 -0.42 -0.04 16 31 H 0.07 0.34 8.06 -51.93 -0.42 -0.08 16 32 H 0.13 0.87 8.04 -52.49 -0.42 0.45 16 33 H 0.40 3.77 8.80 -40.82 -0.36 3.41 16 34 H 0.12 2.23 6.54 -52.48 -0.34 1.88 16 35 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 36 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -32.22 335.26 -8.73 -40.95 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.93 Total: 2.35 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -3.55 Total: -21.97 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.68 Total: -34.79 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.05 Total: -8.55 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.22 -8.73 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928402132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.553 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds