Wall clock time and date at job start Mon Mar 30 2020 01:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47502 * 2 1 4 4 C 1.50702 * 120.00130 * 91.04838 * 3 2 1 5 5 C 1.33016 * 119.99951 * 271.04780 * 3 2 1 6 6 C 1.47060 * 120.00055 * 8.33265 * 5 3 2 7 7 O 1.21626 * 119.99849 * 6.88534 * 6 5 3 8 8 N 1.34777 * 120.00453 * 186.88587 * 6 5 3 9 9 C 1.39833 * 119.99997 * 184.29977 * 8 6 5 10 10 C 1.38891 * 120.07541 * 35.38229 * 9 8 6 11 11 C 1.38105 * 119.92852 * 180.29783 * 10 9 8 12 12 C 1.38292 * 120.07031 * 359.44159 * 11 10 9 13 13 C 1.50693 * 119.92798 * 180.29819 * 12 11 10 14 14 C 1.50701 * 109.47576 * 270.25867 * 13 12 11 15 15 H 1.08006 * 119.99522 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00201 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00317 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00121 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47029 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47067 * 119.99600 * 18 16 14 21 21 H 1.48498 * 109.47367 * 239.99857 * 18 16 14 22 22 C 1.38288 * 120.14519 * 0.55936 * 12 11 10 23 23 C 1.38111 * 120.07399 * 359.71832 * 22 12 11 24 24 H 1.08994 * 109.47654 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47333 * 300.00974 * 1 2 3 26 26 H 1.09010 * 109.46785 * 60.00212 * 1 2 3 27 27 H 1.08999 * 109.47333 * 239.99026 * 2 1 3 28 28 H 1.09010 * 109.46785 * 119.99788 * 2 1 3 29 29 H 1.09005 * 109.47079 * 270.00102 * 4 3 2 30 30 H 1.09000 * 109.47085 * 30.00086 * 4 3 2 31 31 H 1.09004 * 109.47076 * 150.00257 * 4 3 2 32 32 H 1.08001 * 120.00442 * 188.32987 * 5 3 2 33 33 H 0.96997 * 119.99567 * 4.29536 * 8 6 5 34 34 H 1.08004 * 120.03811 * 0.02562 * 10 9 8 35 35 H 1.07994 * 119.96529 * 179.72056 * 11 10 9 36 36 H 1.09004 * 109.47007 * 30.25967 * 13 12 11 37 37 H 1.09004 * 109.47149 * 150.25212 * 13 12 11 38 38 H 0.97000 * 120.00431 * 180.02562 * 17 16 14 39 39 H 1.08000 * 119.96370 * 179.74569 * 22 12 11 40 40 H 1.07998 * 120.03731 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3061 2.1232 1.3049 5 6 2.2343 2.0548 -1.1518 6 6 1.7972 1.4418 -2.4150 7 8 1.1414 0.4176 -2.3990 8 7 2.1233 2.0148 -3.5905 9 6 1.6328 1.4833 -4.7873 10 6 0.3577 0.9348 -4.8344 11 6 -0.1213 0.4051 -6.0165 12 6 0.6628 0.4309 -7.1554 13 6 0.1344 -0.1419 -8.4451 14 6 0.4921 -1.6034 -8.5296 15 1 1.0470 -2.0707 -7.7295 16 6 0.1118 -2.3438 -9.6288 17 7 -0.5635 -1.7747 -10.6034 18 14 0.5558 -4.1552 -9.7338 19 1 1.3119 -4.5509 -8.5185 20 1 -0.6857 -4.9644 -9.8302 21 1 1.3945 -4.3905 -10.9365 22 6 1.9329 0.9763 -7.1119 23 6 2.4201 1.5025 -5.9315 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.4034 2.6351 1.6383 30 1 2.6072 1.3919 2.0550 31 1 3.1058 2.8507 1.1651 32 1 2.7191 3.0198 -1.1593 33 1 2.6981 2.7960 -3.6063 34 1 -0.2570 0.9185 -3.9465 35 1 -1.1109 -0.0256 -6.0527 36 1 -0.9495 -0.0308 -8.4749 37 1 0.5773 0.3899 -9.2873 38 1 -0.8313 -2.2957 -11.3765 39 1 2.5443 0.9912 -8.0020 40 1 3.4122 1.9279 -5.8981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928402132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:50 Heat of formation + Delta-G solvation = -27.641262 kcal Electronic energy + Delta-G solvation = -20030.187902 eV Core-core repulsion = 17001.826997 eV Total energy + Delta-G solvation = -3028.360905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.53659 -39.77140 -37.20817 -35.97463 -34.97387 -32.50545 -31.77962 -31.61877 -29.37237 -27.99376 -25.35515 -24.52872 -23.81405 -22.65194 -21.46582 -19.81553 -18.53532 -18.16954 -17.99603 -16.86416 -16.42483 -16.06374 -15.83749 -15.54172 -15.20997 -14.62876 -14.47046 -14.43028 -14.27682 -13.73491 -13.68546 -13.61457 -13.32363 -13.16205 -13.12324 -12.81597 -12.63379 -12.46971 -12.08477 -11.94059 -11.71147 -11.59965 -11.51367 -10.94533 -10.62189 -10.46538 -10.05293 -9.76220 -8.83137 -8.19691 -6.34506 0.22150 0.56339 0.68806 1.37549 1.38200 1.52113 2.20975 2.27242 2.39617 3.02078 3.08904 3.76018 3.83991 4.05571 4.14677 4.23017 4.37371 4.47185 4.53684 4.61492 4.64666 4.68157 4.71005 4.77105 4.86147 5.00518 5.10852 5.12496 5.26358 5.31981 5.34495 5.39256 5.43090 5.50274 5.53712 5.64915 5.70849 5.75205 6.07925 6.12684 6.25939 6.59375 6.78129 7.29009 7.33992 8.87985 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027039 B = 0.003532 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.281815 B = 7925.356371 C = 8488.371827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.019 4.019 4 C -0.123 4.123 5 C -0.240 4.240 6 C 0.529 3.471 7 O -0.552 6.552 8 N -0.657 5.657 9 C 0.123 3.877 10 C -0.121 4.121 11 C -0.121 4.121 12 C -0.076 4.076 13 C 0.058 3.942 14 C -0.529 4.529 15 H 0.050 0.950 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.965 3.035 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.272 1.272 22 C -0.114 4.114 23 C -0.131 4.131 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.425 0.575 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.001 0.999 37 H 0.009 0.991 38 H 0.266 0.734 39 H 0.126 0.874 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.480 11.461 23.514 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.142 4.142 3 C -0.021 4.021 4 C -0.179 4.179 5 C -0.260 4.260 6 C 0.322 3.678 7 O -0.433 6.433 8 N -0.303 5.303 9 C 0.029 3.971 10 C -0.142 4.142 11 C -0.140 4.140 12 C -0.076 4.076 13 C 0.021 3.979 14 C -0.566 4.566 15 H 0.068 0.932 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.197 1.197 22 C -0.132 4.132 23 C -0.151 4.151 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.180 0.820 33 H 0.264 0.736 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.019 0.981 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.956 10.751 23.421 26.971 hybrid contribution -0.048 -0.784 -0.887 1.185 sum 7.908 9.967 22.534 25.878 Atomic orbital electron populations 1.21515 0.94541 1.01443 1.01223 1.20919 0.96962 0.93733 1.02609 1.22862 0.88564 0.94718 0.95918 1.21073 1.03572 1.00810 0.92428 1.22404 1.09946 1.03768 0.89893 1.19392 0.79762 0.83596 0.85043 1.90801 1.40132 1.24778 1.87546 1.43265 1.51112 1.32567 1.03333 1.17591 0.92490 1.00351 0.86703 1.20967 0.95112 1.00812 0.97260 1.20914 1.00140 1.00438 0.92461 1.20396 0.95178 0.95843 0.96209 1.18083 0.94889 0.94820 0.90094 1.21408 1.35588 0.95227 1.04422 0.93190 1.25908 0.94846 1.03418 0.95143 1.70078 1.39416 1.38180 1.09243 0.85404 0.78250 0.79147 0.78298 1.19339 1.20114 1.19743 1.20980 0.94971 0.98727 0.98572 1.21059 1.00020 1.02668 0.91320 0.93358 0.91767 0.93877 0.91581 0.90267 0.89092 0.90128 0.89310 0.82020 0.73579 0.85989 0.87299 0.98071 0.97305 0.92501 0.85654 0.82546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.37 71.98 0.67 -2.16 16 2 C -0.11 -2.14 5.33 29.85 0.16 -1.98 16 3 C -0.02 -0.29 5.36 -17.61 -0.09 -0.39 16 4 C -0.12 -0.95 10.05 71.24 0.72 -0.24 16 5 C -0.24 -3.96 9.63 23.42 0.23 -3.73 16 6 C 0.53 13.42 7.32 86.56 0.63 14.05 16 7 O -0.55 -18.45 9.10 -4.11 -0.04 -18.48 16 8 N -0.66 -15.39 5.33 -306.78 -1.63 -17.02 16 9 C 0.12 3.93 6.24 38.18 0.24 4.17 16 10 C -0.12 -4.61 8.65 22.39 0.19 -4.42 16 11 C -0.12 -5.27 9.69 22.25 0.22 -5.05 16 12 C -0.08 -3.52 5.07 -19.84 -0.10 -3.62 16 13 C 0.06 3.23 5.10 29.10 0.15 3.38 16 14 C -0.53 -31.46 9.09 25.60 0.23 -31.23 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 16 C 0.00 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 18 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 C -0.11 -4.48 9.69 22.25 0.22 -4.26 16 23 C -0.13 -4.10 9.97 22.40 0.22 -3.87 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.04 1.17 6.44 -2.38 -0.02 1.15 16 27 H 0.07 1.81 5.91 -2.39 -0.01 1.79 16 28 H 0.08 1.26 8.02 -2.38 -0.02 1.25 16 29 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.08 0.51 8.03 -2.39 -0.02 0.49 16 31 H 0.09 0.41 8.06 -2.39 -0.02 0.39 16 32 H 0.16 1.45 8.04 -2.91 -0.02 1.43 16 33 H 0.43 6.25 8.80 -92.71 -0.82 5.43 16 34 H 0.12 4.59 6.54 -2.91 -0.02 4.58 16 35 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.00 0.06 8.09 -2.38 -0.02 0.04 16 37 H 0.01 0.50 8.08 -2.38 -0.02 0.48 16 38 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 39 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -73.43 335.26 5.00 -68.43 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.21 Total: 14.72 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 4.14 Total: -38.61 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -1.35 Total: -73.90 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.04 Total: -18.48 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.43 5.00 -68.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928402132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.793 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds