Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 H 1.08998 * 115.55688 * 29.31344 * 3 2 1 5 5 C 1.52999 * 117.49836 * 243.62205 * 3 2 1 6 6 C 1.53001 * 117.49755 * 174.99856 * 3 2 1 7 7 H 1.09001 * 117.49841 * 359.97438 * 6 3 2 8 8 C 1.50701 * 117.49602 * 214.98227 * 6 3 2 9 9 O 1.21290 * 120.00255 * 359.97438 * 8 6 3 10 10 N 1.34778 * 119.99966 * 180.02562 * 8 6 3 11 11 C 1.39926 * 120.00199 * 175.64360 * 10 8 6 12 12 C 1.38869 * 120.07347 * 214.80226 * 11 10 8 13 13 C 1.38108 * 119.92734 * 179.72308 * 12 11 10 14 14 C 1.38285 * 120.07265 * 0.53443 * 13 12 11 15 15 C 1.50701 * 119.93255 * 179.74385 * 14 13 12 16 16 C 1.50700 * 109.47068 * 270.02129 * 15 14 13 17 17 H 1.08004 * 119.99642 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99892 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99721 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00199 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47226 * 89.99286 * 20 18 16 22 22 H 1.48495 * 109.47361 * 209.99618 * 20 18 16 23 23 H 1.48506 * 109.47047 * 329.99706 * 20 18 16 24 24 C 1.38278 * 120.13768 * 359.76318 * 14 13 12 25 25 C 1.38115 * 120.07499 * 359.95816 * 24 14 13 26 26 H 1.09000 * 109.46941 * 60.00040 * 1 2 3 27 27 H 1.09005 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47020 * 299.99714 * 1 2 3 29 29 H 1.09001 * 109.47233 * 239.99669 * 2 1 3 30 30 H 1.09008 * 109.47145 * 120.00558 * 2 1 3 31 31 H 1.08996 * 117.49299 * 145.02340 * 5 3 2 32 32 H 1.08998 * 117.50009 * 359.97438 * 5 3 2 33 33 H 0.96997 * 120.00089 * 355.37886 * 10 8 6 34 34 H 1.07999 * 120.03361 * 359.97438 * 12 11 10 35 35 H 1.08008 * 119.96900 * 180.29934 * 13 12 11 36 36 H 1.09005 * 109.46949 * 30.02207 * 15 14 13 37 37 H 1.08996 * 109.46990 * 150.01964 * 15 14 13 38 38 H 0.96992 * 119.99679 * 179.97438 * 19 18 16 39 39 H 1.08007 * 119.96204 * 179.97438 * 24 14 13 40 40 H 1.07998 * 120.03913 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1716 0.4814 5 6 2.8441 1.9075 -1.2158 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7718 0.1966 8 6 4.0229 2.8618 0.8915 9 8 3.2158 3.6169 1.3912 10 7 5.3425 3.1003 1.0269 11 6 5.7810 4.2655 1.6657 12 6 6.9384 4.9012 1.2359 13 6 7.3654 6.0542 1.8649 14 6 6.6477 6.5696 2.9287 15 6 7.1196 7.8248 3.6164 16 6 8.0489 7.4599 4.7453 17 1 8.2754 6.4229 4.9445 18 6 8.6107 8.4501 5.5232 19 7 9.4213 8.1317 6.5087 20 14 8.2195 10.2437 5.1782 21 1 7.0255 10.6496 5.9623 22 1 9.3779 11.0870 5.5681 23 1 7.9438 10.4205 3.7297 24 6 5.4982 5.9355 3.3630 25 6 5.0627 4.7853 2.7346 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8900 31 1 2.7214 2.9427 -1.5342 32 1 3.0100 1.1857 -2.0155 33 1 5.9882 2.4624 0.6849 34 1 7.5018 4.4966 0.4081 35 1 8.2628 6.5519 1.5281 36 1 7.6475 8.4548 2.9005 37 1 6.2610 8.3664 4.0132 38 1 9.8168 8.8282 7.0556 39 1 4.9401 6.3403 4.1944 40 1 4.1646 4.2907 3.0739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928402301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = -2.159561 kcal Electronic energy + Delta-G solvation = -19660.108879 eV Core-core repulsion = 16632.852943 eV Total energy + Delta-G solvation = -3027.255936 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54877 -38.67680 -37.16732 -34.89117 -32.96800 -32.37355 -30.80033 -30.34514 -27.36837 -24.88502 -24.04870 -22.60076 -22.37313 -20.91840 -20.27712 -19.93621 -17.67485 -17.02597 -16.75503 -15.38923 -15.31164 -14.91403 -14.83786 -14.59388 -14.11087 -13.86982 -13.28196 -12.98063 -12.82220 -12.72976 -12.45702 -12.43772 -12.33343 -11.68967 -11.67306 -11.48687 -11.36634 -10.86076 -10.59867 -10.48907 -10.35059 -10.17791 -10.12826 -9.80095 -9.47873 -9.30691 -8.57136 -8.33487 -7.42855 -6.06285 -4.05175 1.78111 2.01404 2.52336 3.00538 3.30157 3.37679 3.40823 3.54260 4.28755 4.39851 4.42827 4.43364 4.53194 4.81440 4.86154 4.99274 5.09345 5.25454 5.32437 5.39075 5.44781 5.54347 5.57983 5.65107 5.75585 5.81173 5.87754 5.97674 6.05685 6.06267 6.12737 6.57639 6.74229 6.82676 6.96570 7.05160 7.08388 7.48666 7.59442 7.62153 7.72856 8.16861 8.51071 8.99118 9.54136 11.06674 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.045112 B = 0.002931 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.526991 B = 9551.788022 C = 9705.964944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.119 0.881 5 C -0.148 4.148 6 C -0.191 4.191 7 H 0.124 0.876 8 C 0.538 3.462 9 O -0.523 6.523 10 N -0.664 5.664 11 C 0.105 3.895 12 C -0.142 4.142 13 C -0.106 4.106 14 C -0.038 4.038 15 C 0.014 3.986 16 C -0.512 4.512 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.107 4.107 25 C -0.117 4.117 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.406 0.594 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.599 -15.569 -16.322 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.137 0.863 5 C -0.185 4.185 6 C -0.212 4.212 7 H 0.142 0.858 8 C 0.326 3.674 9 O -0.398 6.398 10 N -0.308 5.308 11 C 0.013 3.987 12 C -0.162 4.162 13 C -0.125 4.125 14 C -0.038 4.038 15 C -0.023 4.023 16 C -0.550 4.550 17 H 0.092 0.908 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.125 4.125 25 C -0.136 4.136 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.241 0.759 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.092 -14.978 -15.847 25.433 hybrid contribution 0.478 0.577 -0.147 0.763 sum -12.615 -14.401 -15.994 24.946 Atomic orbital electron populations 1.21743 0.95110 1.01654 1.02249 1.21162 0.96365 0.93554 1.02155 1.22505 0.91235 0.98825 1.00991 0.86286 1.23119 1.01874 1.03292 0.90223 1.22274 0.97986 0.98715 1.02232 0.85807 1.19753 0.82009 0.85773 0.79883 1.90708 1.53789 1.48065 1.47271 1.43304 1.07304 1.22093 1.58129 1.17567 0.96877 0.89245 0.95031 1.20745 0.97345 0.96915 1.01172 1.20854 0.99719 0.95536 0.96393 1.20309 0.92619 0.97643 0.93251 1.18811 0.96708 0.90825 0.95964 1.20941 1.26144 0.95504 1.12376 0.90819 1.25007 0.94635 0.98994 0.94697 1.69902 1.31330 1.33380 1.19288 0.86798 0.78086 0.85251 0.79342 1.20157 1.21283 1.18919 1.20996 0.96770 0.95295 0.99487 1.21123 1.00524 0.97573 0.94428 0.92514 0.92612 0.92391 0.91665 0.91343 0.88194 0.87736 0.75852 0.86648 0.85901 0.95395 0.95812 0.92628 0.85995 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.87 37.16 0.37 -0.56 16 2 C -0.10 -0.62 6.22 -26.73 -0.17 -0.79 16 3 C -0.12 -1.00 5.25 -90.62 -0.48 -1.48 16 4 H 0.12 1.26 7.60 -51.93 -0.39 0.87 16 5 C -0.15 -1.14 9.88 -26.73 -0.26 -1.40 16 6 C -0.19 -1.71 5.91 -91.77 -0.54 -2.25 16 7 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 8 C 0.54 7.10 7.46 -10.98 -0.08 7.02 16 9 O -0.52 -8.95 13.70 5.55 0.08 -8.87 16 10 N -0.66 -8.44 5.34 -9.86 -0.05 -8.50 16 11 C 0.11 1.74 6.30 -83.69 -0.53 1.21 16 12 C -0.14 -2.30 9.97 -39.40 -0.39 -2.69 16 13 C -0.11 -2.03 9.69 -39.61 -0.38 -2.41 16 14 C -0.04 -0.81 5.07 -104.59 -0.53 -1.34 16 15 C 0.01 0.34 4.17 -29.03 -0.12 0.22 16 16 C -0.51 -14.63 9.65 -34.44 -0.33 -14.96 16 17 H 0.07 2.30 7.98 -52.48 -0.42 1.88 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 20 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 24 C -0.11 -2.18 9.69 -39.61 -0.38 -2.56 16 25 C -0.12 -2.18 8.70 -39.39 -0.34 -2.53 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.35 7.88 -51.93 -0.41 -0.06 16 30 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 33 H 0.41 3.68 8.82 -40.82 -0.36 3.32 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.12 2.21 8.06 -52.48 -0.42 1.78 16 36 H 0.03 0.67 7.14 -51.93 -0.37 0.29 16 37 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 40 H 0.13 2.41 6.23 -52.49 -0.33 2.08 16 LS Contribution 337.04 15.07 5.08 5.08 Total: -1.00 -33.12 337.04 -9.13 -42.24 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.06 Total: 2.73 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -4.27 Total: -22.64 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.72 Total: -35.44 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.12 -9.13 -42.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928402301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.083 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds