Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 H 1.08998 * 115.55688 * 29.31344 * 3 2 1 5 5 C 1.52999 * 117.49836 * 243.62205 * 3 2 1 6 6 C 1.53001 * 117.49755 * 174.99856 * 3 2 1 7 7 H 1.09001 * 117.49841 * 359.97438 * 6 3 2 8 8 C 1.50701 * 117.49602 * 214.98227 * 6 3 2 9 9 O 1.21290 * 120.00255 * 359.97438 * 8 6 3 10 10 N 1.34778 * 119.99966 * 180.02562 * 8 6 3 11 11 C 1.39926 * 120.00199 * 175.64360 * 10 8 6 12 12 C 1.38869 * 120.07347 * 214.80226 * 11 10 8 13 13 C 1.38108 * 119.92734 * 179.72308 * 12 11 10 14 14 C 1.38285 * 120.07265 * 0.53443 * 13 12 11 15 15 C 1.50701 * 119.93255 * 179.74385 * 14 13 12 16 16 C 1.50700 * 109.47068 * 270.02129 * 15 14 13 17 17 H 1.08004 * 119.99642 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99892 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99721 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00199 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47226 * 89.99286 * 20 18 16 22 22 H 1.48495 * 109.47361 * 209.99618 * 20 18 16 23 23 H 1.48506 * 109.47047 * 329.99706 * 20 18 16 24 24 C 1.38278 * 120.13768 * 359.76318 * 14 13 12 25 25 C 1.38115 * 120.07499 * 359.95816 * 24 14 13 26 26 H 1.09000 * 109.46941 * 60.00040 * 1 2 3 27 27 H 1.09005 * 109.46930 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47020 * 299.99714 * 1 2 3 29 29 H 1.09001 * 109.47233 * 239.99669 * 2 1 3 30 30 H 1.09008 * 109.47145 * 120.00558 * 2 1 3 31 31 H 1.08996 * 117.49299 * 145.02340 * 5 3 2 32 32 H 1.08998 * 117.50009 * 359.97438 * 5 3 2 33 33 H 0.96997 * 120.00089 * 355.37886 * 10 8 6 34 34 H 1.07999 * 120.03361 * 359.97438 * 12 11 10 35 35 H 1.08008 * 119.96900 * 180.29934 * 13 12 11 36 36 H 1.09005 * 109.46949 * 30.02207 * 15 14 13 37 37 H 1.08996 * 109.46990 * 150.01964 * 15 14 13 38 38 H 0.96992 * 119.99679 * 179.97438 * 19 18 16 39 39 H 1.08007 * 119.96204 * 179.97438 * 24 14 13 40 40 H 1.07998 * 120.03913 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1716 0.4814 5 6 2.8441 1.9075 -1.2158 6 6 3.5502 1.6578 0.1183 7 1 4.1803 0.7718 0.1966 8 6 4.0229 2.8618 0.8915 9 8 3.2158 3.6169 1.3912 10 7 5.3425 3.1003 1.0269 11 6 5.7810 4.2655 1.6657 12 6 6.9384 4.9012 1.2359 13 6 7.3654 6.0542 1.8649 14 6 6.6477 6.5696 2.9287 15 6 7.1196 7.8248 3.6164 16 6 8.0489 7.4599 4.7453 17 1 8.2754 6.4229 4.9445 18 6 8.6107 8.4501 5.5232 19 7 9.4213 8.1317 6.5087 20 14 8.2195 10.2437 5.1782 21 1 7.0255 10.6496 5.9623 22 1 9.3779 11.0870 5.5681 23 1 7.9438 10.4205 3.7297 24 6 5.4982 5.9355 3.3630 25 6 5.0627 4.7853 2.7346 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5140 0.8900 31 1 2.7214 2.9427 -1.5342 32 1 3.0100 1.1857 -2.0155 33 1 5.9882 2.4624 0.6849 34 1 7.5018 4.4966 0.4081 35 1 8.2628 6.5519 1.5281 36 1 7.6475 8.4548 2.9005 37 1 6.2610 8.3664 4.0132 38 1 9.8168 8.8282 7.0556 39 1 4.9401 6.3403 4.1944 40 1 4.1646 4.2907 3.0739 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928402301.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = -21.693384 kcal Electronic energy + Delta-G solvation = -19660.955929 eV Core-core repulsion = 16632.852943 eV Total energy + Delta-G solvation = -3028.102986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66210 -39.92061 -38.07725 -36.25898 -34.93347 -33.04971 -32.46792 -31.80874 -29.03355 -26.03504 -24.70784 -24.13736 -23.83161 -21.98397 -21.37428 -21.01258 -18.97277 -18.75250 -18.15257 -16.79287 -16.40493 -16.17095 -15.97281 -15.73046 -15.29634 -15.04150 -14.84618 -14.39710 -14.31179 -13.93436 -13.58011 -13.53536 -13.39774 -13.22083 -12.97929 -12.52910 -12.26398 -12.18896 -11.92404 -11.85730 -11.83646 -11.63137 -11.23976 -11.11709 -10.96499 -10.79277 -10.73217 -9.79958 -8.88389 -8.30102 -6.35014 0.38373 0.53540 1.36804 1.37637 1.45787 1.50065 1.99687 2.35159 2.80728 2.95697 3.04008 3.57294 3.72910 3.84836 4.01016 4.11910 4.17239 4.28631 4.29136 4.49355 4.54497 4.59026 4.61559 4.71070 4.79079 4.94758 4.98454 5.03331 5.05725 5.16493 5.23659 5.25073 5.30619 5.38404 5.41380 5.50401 5.54559 5.60453 5.97522 6.13410 6.28179 6.45439 6.70867 7.14266 7.28223 8.86333 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.045112 B = 0.002931 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.526991 B = 9551.788022 C = 9705.964944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.125 4.125 4 H 0.090 0.910 5 C -0.132 4.132 6 C -0.190 4.190 7 H 0.158 0.842 8 C 0.533 3.467 9 O -0.568 6.568 10 N -0.652 5.652 11 C 0.116 3.884 12 C -0.129 4.129 13 C -0.113 4.113 14 C -0.073 4.073 15 C 0.021 3.979 16 C -0.518 4.518 17 H 0.028 0.972 18 C 0.007 3.993 19 N -0.948 5.948 20 Si 0.951 3.049 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.245 1.245 24 C -0.121 4.121 25 C -0.129 4.129 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.428 0.572 34 H 0.160 0.840 35 H 0.133 0.867 36 H 0.036 0.964 37 H 0.025 0.975 38 H 0.268 0.732 39 H 0.114 0.886 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 -16.757 -19.322 28.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.144 4.144 4 H 0.108 0.892 5 C -0.169 4.169 6 C -0.210 4.210 7 H 0.175 0.825 8 C 0.323 3.677 9 O -0.447 6.447 10 N -0.298 5.298 11 C 0.022 3.978 12 C -0.149 4.149 13 C -0.131 4.131 14 C -0.074 4.074 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.047 0.953 18 C -0.190 4.190 19 N -0.589 5.589 20 Si 0.774 3.226 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.168 1.168 24 C -0.140 4.140 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.155 0.845 33 H 0.267 0.733 34 H 0.178 0.822 35 H 0.150 0.850 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.132 0.868 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.306 -16.209 -18.881 28.219 hybrid contribution 0.496 0.795 0.769 1.212 sum -12.810 -15.414 -18.112 27.014 Atomic orbital electron populations 1.21758 0.95235 1.02242 1.01695 1.21160 0.96241 0.92068 1.03178 1.22513 0.90645 0.99600 1.01652 0.89211 1.23229 1.00025 1.03387 0.90265 1.22327 0.98534 0.97685 1.02500 0.82461 1.20588 0.81511 0.86382 0.79253 1.90699 1.54909 1.49932 1.49129 1.43270 1.07955 1.21232 1.57341 1.17691 0.96236 0.90005 0.93833 1.21074 0.96959 0.95431 1.01387 1.21053 0.99708 0.96558 0.95824 1.20194 0.94146 0.97758 0.95254 1.18653 0.95691 0.92521 0.94759 1.21154 1.26946 0.93541 1.13977 0.95329 1.25986 0.94320 1.04415 0.94291 1.70056 1.32887 1.35237 1.20714 0.85650 0.78117 0.78542 0.80334 1.19346 1.20629 1.16802 1.20990 0.96933 0.96247 0.99835 1.21140 1.00858 0.97387 0.95524 0.92408 0.91411 0.93705 0.89555 0.91286 0.89613 0.84487 0.73288 0.82248 0.84958 0.94614 0.95689 0.92350 0.86824 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.87 71.98 0.71 -0.94 16 2 C -0.09 -0.93 6.22 30.59 0.19 -0.74 16 3 C -0.13 -1.93 5.25 -10.79 -0.06 -1.99 16 4 H 0.09 1.94 7.60 -2.39 -0.02 1.92 16 5 C -0.13 -1.63 9.88 30.60 0.30 -1.33 16 6 C -0.19 -2.85 5.91 -11.54 -0.07 -2.92 16 7 H 0.16 1.33 8.14 -2.39 -0.02 1.31 16 8 C 0.53 13.22 7.46 87.66 0.65 13.87 16 9 O -0.57 -19.55 13.70 -3.06 -0.04 -19.59 16 10 N -0.65 -14.92 5.34 -303.50 -1.62 -16.54 16 11 C 0.12 3.67 6.30 38.15 0.24 3.91 16 12 C -0.13 -3.86 9.97 22.39 0.22 -3.64 16 13 C -0.11 -4.19 9.69 22.25 0.22 -3.97 16 14 C -0.07 -3.20 5.07 -19.84 -0.10 -3.30 16 15 C 0.02 1.03 4.17 29.10 0.12 1.15 16 16 C -0.52 -30.65 9.65 25.60 0.25 -30.40 16 17 H 0.03 1.88 7.98 -2.91 -0.02 1.86 16 18 C 0.01 0.40 5.47 84.65 0.46 0.87 16 19 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 20 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.24 -10.62 6.54 99.48 0.65 -9.97 16 24 C -0.12 -5.12 9.69 22.25 0.22 -4.90 16 25 C -0.13 -4.89 8.70 22.39 0.19 -4.70 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.57 7.88 -2.39 -0.02 0.55 16 30 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.14 0.84 8.03 -2.39 -0.02 0.82 16 33 H 0.43 6.08 8.82 -92.71 -0.82 5.26 16 34 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.04 1.68 7.14 -2.38 -0.02 1.66 16 37 H 0.02 1.20 7.51 -2.39 -0.02 1.18 16 38 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 40 H 0.12 4.79 6.23 -2.91 -0.02 4.77 16 Total: -1.00 -75.60 337.04 4.23 -71.37 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.16 Total: 17.11 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 3.55 Total: -39.04 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -1.32 Total: -76.38 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.04 Total: -19.59 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -75.60 4.23 -71.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928402301.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.678 kcal (2) G-P(sol) polarization free energy of solvation -75.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds