Wall clock time and date at job start Mon Mar 30 2020 01:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00160 * 2 1 4 4 C 1.53009 * 109.46965 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.46969 * 240.00096 * 3 2 1 6 6 C 1.50695 * 109.47219 * 120.00004 * 3 2 1 7 7 O 1.21288 * 119.99814 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99838 * 180.02562 * 6 3 2 9 9 C 1.39927 * 119.99585 * 185.27077 * 8 6 3 10 10 C 1.38874 * 120.07215 * 33.29114 * 9 8 6 11 11 C 1.38112 * 119.93099 * 180.02562 * 10 9 8 12 12 C 1.38283 * 120.07013 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.92860 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46706 * 90.00245 * 13 12 11 15 15 H 1.07999 * 120.00604 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47329 * 89.99565 * 18 16 14 20 20 H 1.48497 * 109.47377 * 209.99735 * 18 16 14 21 21 H 1.48501 * 109.47197 * 329.99922 * 18 16 14 22 22 C 1.38286 * 120.13828 * 0.25319 * 12 11 10 23 23 C 1.38105 * 120.07308 * 359.48773 * 22 12 11 24 24 H 1.08001 * 120.00200 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00525 * 180.02562 * 1 2 3 26 26 H 1.07994 * 119.99534 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46534 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.46720 * 299.99742 * 4 3 2 29 29 H 1.08995 * 109.46949 * 60.00393 * 4 3 2 30 30 H 1.08998 * 109.47110 * 300.00000 * 5 3 2 31 31 H 1.08997 * 109.47261 * 60.00189 * 5 3 2 32 32 H 1.09005 * 109.46583 * 179.97438 * 5 3 2 33 33 H 0.96994 * 120.00037 * 5.27153 * 8 6 3 34 34 H 1.08001 * 120.03469 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.96629 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.47113 * 210.00070 * 13 12 11 37 37 H 1.08995 * 109.47338 * 330.00260 * 13 12 11 38 38 H 0.96996 * 119.99982 * 180.02562 * 17 16 14 39 39 H 1.08002 * 119.95762 * 179.74594 * 22 12 11 40 40 H 1.08004 * 120.04052 * 180.25141 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3860 -1.2493 6 6 2.9299 1.3849 1.2304 7 8 2.9346 0.4720 2.0290 8 7 3.6987 2.4711 1.4439 9 6 4.5849 2.4991 2.5264 10 6 5.2038 1.3300 2.9495 11 6 6.0776 1.3609 4.0186 12 6 6.3362 2.5541 4.6679 13 6 7.2898 2.5840 5.8344 14 6 8.6873 2.8439 5.3341 15 1 8.8672 2.9739 4.2771 16 6 9.7367 2.9146 6.2257 17 7 9.5179 2.7558 7.5128 18 14 11.4692 3.2360 5.6055 19 1 11.7209 4.6992 5.5759 20 1 12.4483 2.5836 6.5115 21 1 11.6157 2.6808 4.2360 22 6 5.7171 3.7189 4.2526 23 6 4.8464 3.6957 3.1809 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9352 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.6143 3.4119 -0.0002 28 1 0.4430 2.4101 -0.8909 29 1 0.4423 2.4105 0.8891 30 1 3.6514 0.5575 -1.2493 31 1 2.3165 1.3284 -2.1392 32 1 3.4878 2.3303 -1.2495 33 1 3.6376 3.2333 0.8472 34 1 5.0013 0.3976 2.4435 35 1 6.5589 0.4521 4.3483 36 1 6.9970 3.3768 6.5228 37 1 7.2614 1.6250 6.3515 38 1 10.2560 2.8059 8.1400 39 1 5.9181 4.6484 4.7645 40 1 4.3664 4.6064 2.8545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928402643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:19 Heat of formation + Delta-G solvation = -3.696727 kcal Electronic energy + Delta-G solvation = -20181.752145 eV Core-core repulsion = 17154.429553 eV Total energy + Delta-G solvation = -3027.322592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.70909 -38.50174 -36.49505 -34.91850 -33.02711 -31.34011 -30.29946 -30.13185 -27.78221 -26.68302 -24.45474 -23.15900 -22.37740 -21.19641 -20.03534 -18.79947 -17.58731 -16.73491 -16.29748 -15.84386 -15.28792 -14.94862 -14.59196 -14.30195 -14.21694 -13.81337 -13.08388 -12.89005 -12.83715 -12.65670 -12.52199 -12.40687 -12.18345 -11.97126 -11.53087 -11.37117 -11.27146 -11.02489 -10.80090 -10.59783 -10.34421 -10.01608 -9.86320 -9.62837 -9.36556 -9.23267 -8.41204 -8.28202 -7.36657 -6.02423 -4.06539 1.85495 2.00621 2.06732 2.73384 3.19501 3.30992 3.37297 3.41528 4.24538 4.38479 4.42572 4.54797 4.63742 4.76721 5.10779 5.15938 5.31391 5.31460 5.37424 5.38629 5.45503 5.57960 5.61977 5.77321 5.83173 5.95582 6.06862 6.12704 6.20980 6.37196 6.49913 6.65127 6.79321 6.91964 7.17443 7.21717 7.51000 7.53824 7.71997 7.88103 7.93328 8.19139 8.33965 8.98821 9.57098 11.07179 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.039443 B = 0.003286 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.714026 B = 8518.703747 C = 8576.744015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C -0.055 4.055 4 C -0.145 4.145 5 C -0.138 4.138 6 C 0.520 3.480 7 O -0.516 6.516 8 N -0.667 5.667 9 C 0.105 3.895 10 C -0.117 4.117 11 C -0.108 4.108 12 C -0.042 4.042 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.108 4.108 23 C -0.144 4.144 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.115 0.885 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.404 0.596 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.122 0.878 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.460 -0.045 -17.471 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.141 4.141 3 C -0.058 4.058 4 C -0.202 4.202 5 C -0.195 4.195 6 C 0.307 3.693 7 O -0.390 6.390 8 N -0.311 5.311 9 C 0.013 3.987 10 C -0.137 4.137 11 C -0.126 4.126 12 C -0.043 4.043 13 C 0.011 3.989 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.127 4.127 23 C -0.164 4.164 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.239 0.761 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.388 -0.738 -16.763 23.455 hybrid contribution 0.992 0.567 -0.524 1.257 sum -15.397 -0.171 -17.287 23.150 Atomic orbital electron populations 1.23957 0.95835 1.02242 1.01044 1.22495 0.95640 0.96588 0.99386 1.19909 0.95697 0.96153 0.94030 1.21974 0.98838 0.96241 1.03190 1.21826 0.99263 1.02849 0.95564 1.20506 0.79632 0.82171 0.87014 1.90730 1.64870 1.37587 1.45796 1.43410 1.39567 1.19173 1.28989 1.17530 0.94620 0.95114 0.91466 1.20973 0.96886 0.97174 0.98706 1.20997 0.97500 0.98515 0.95611 1.20709 0.94179 0.91829 0.97562 1.18351 0.91962 0.98380 0.90223 1.21070 0.91259 1.49029 0.93546 0.92466 1.25021 0.99193 0.95314 0.94859 1.69961 1.31977 1.49977 1.01417 0.86537 0.84074 0.78350 0.78753 1.20618 1.21175 1.19812 1.20884 0.96731 0.98642 0.96402 1.20736 1.02046 0.96044 0.97593 0.87936 0.88190 0.86726 0.91831 0.90873 0.91540 0.91655 0.91105 0.91718 0.76102 0.85965 0.86095 0.95318 0.95291 0.92853 0.86012 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 13.70 29.01 0.40 -1.22 16 2 C -0.12 -1.21 8.00 -36.03 -0.29 -1.50 16 3 C -0.05 -0.51 0.84 -156.81 -0.13 -0.64 16 4 C -0.15 -1.02 7.02 37.16 0.26 -0.76 16 5 C -0.14 -1.00 8.36 37.16 0.31 -0.69 16 6 C 0.52 6.95 6.21 -10.99 -0.07 6.88 16 7 O -0.52 -9.09 13.72 5.55 0.08 -9.01 16 8 N -0.67 -8.48 5.12 -9.86 -0.05 -8.53 16 9 C 0.10 1.75 6.28 -83.69 -0.53 1.22 16 10 C -0.12 -2.22 8.66 -39.39 -0.34 -2.56 16 11 C -0.11 -2.24 9.69 -39.61 -0.38 -2.62 16 12 C -0.04 -0.94 5.07 -104.59 -0.53 -1.47 16 13 C 0.05 1.24 5.10 -29.04 -0.15 1.10 16 14 C -0.51 -14.39 9.09 -34.44 -0.31 -14.70 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 18 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.11 -2.10 9.69 -39.61 -0.38 -2.49 16 23 C -0.14 -2.38 9.96 -39.39 -0.39 -2.77 16 24 H 0.10 0.73 5.69 -52.49 -0.30 0.43 16 25 H 0.10 0.74 8.06 -52.49 -0.42 0.31 16 26 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.06 0.36 7.45 -51.93 -0.39 -0.02 16 28 H 0.07 0.39 7.50 -51.93 -0.39 0.01 16 29 H 0.07 0.53 7.50 -51.93 -0.39 0.14 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 33 H 0.40 3.69 7.68 -40.82 -0.31 3.38 16 34 H 0.12 2.29 6.42 -52.49 -0.34 1.95 16 35 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 334.84 15.07 5.05 5.05 Total: -1.00 -32.58 334.84 -7.70 -40.28 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.85 Total: 2.18 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -2.64 Total: -20.68 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.69 Total: -34.40 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.58 -7.70 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928402643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.581 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds