Wall clock time and date at job start Mon Mar 30 2020 01:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00160 * 2 1 4 4 C 1.53009 * 109.46965 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.46969 * 240.00096 * 3 2 1 6 6 C 1.50695 * 109.47219 * 120.00004 * 3 2 1 7 7 O 1.21288 * 119.99814 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99838 * 180.02562 * 6 3 2 9 9 C 1.39927 * 119.99585 * 185.27077 * 8 6 3 10 10 C 1.38874 * 120.07215 * 33.29114 * 9 8 6 11 11 C 1.38112 * 119.93099 * 180.02562 * 10 9 8 12 12 C 1.38283 * 120.07013 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.92860 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46706 * 90.00245 * 13 12 11 15 15 H 1.07999 * 120.00604 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47329 * 89.99565 * 18 16 14 20 20 H 1.48497 * 109.47377 * 209.99735 * 18 16 14 21 21 H 1.48501 * 109.47197 * 329.99922 * 18 16 14 22 22 C 1.38286 * 120.13828 * 0.25319 * 12 11 10 23 23 C 1.38105 * 120.07308 * 359.48773 * 22 12 11 24 24 H 1.08001 * 120.00200 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00525 * 180.02562 * 1 2 3 26 26 H 1.07994 * 119.99534 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46534 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.46720 * 299.99742 * 4 3 2 29 29 H 1.08995 * 109.46949 * 60.00393 * 4 3 2 30 30 H 1.08998 * 109.47110 * 300.00000 * 5 3 2 31 31 H 1.08997 * 109.47261 * 60.00189 * 5 3 2 32 32 H 1.09005 * 109.46583 * 179.97438 * 5 3 2 33 33 H 0.96994 * 120.00037 * 5.27153 * 8 6 3 34 34 H 1.08001 * 120.03469 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.96629 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.47113 * 210.00070 * 13 12 11 37 37 H 1.08995 * 109.47338 * 330.00260 * 13 12 11 38 38 H 0.96996 * 119.99982 * 180.02562 * 17 16 14 39 39 H 1.08002 * 119.95762 * 179.74594 * 22 12 11 40 40 H 1.08004 * 120.04052 * 180.25141 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0692 2.4680 -0.0006 5 6 2.9431 1.3860 -1.2493 6 6 2.9299 1.3849 1.2304 7 8 2.9346 0.4720 2.0290 8 7 3.6987 2.4711 1.4439 9 6 4.5849 2.4991 2.5264 10 6 5.2038 1.3300 2.9495 11 6 6.0776 1.3609 4.0186 12 6 6.3362 2.5541 4.6679 13 6 7.2898 2.5840 5.8344 14 6 8.6873 2.8439 5.3341 15 1 8.8672 2.9739 4.2771 16 6 9.7367 2.9146 6.2257 17 7 9.5179 2.7558 7.5128 18 14 11.4692 3.2360 5.6055 19 1 11.7209 4.6992 5.5759 20 1 12.4483 2.5836 6.5115 21 1 11.6157 2.6808 4.2360 22 6 5.7171 3.7189 4.2526 23 6 4.8464 3.6957 3.1809 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9352 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.6143 3.4119 -0.0002 28 1 0.4430 2.4101 -0.8909 29 1 0.4423 2.4105 0.8891 30 1 3.6514 0.5575 -1.2493 31 1 2.3165 1.3284 -2.1392 32 1 3.4878 2.3303 -1.2495 33 1 3.6376 3.2333 0.8472 34 1 5.0013 0.3976 2.4435 35 1 6.5589 0.4521 4.3483 36 1 6.9970 3.3768 6.5228 37 1 7.2614 1.6250 6.3515 38 1 10.2560 2.8059 8.1400 39 1 5.9181 4.6484 4.7645 40 1 4.3664 4.6064 2.8545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928402643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:19 Heat of formation + Delta-G solvation = -22.680129 kcal Electronic energy + Delta-G solvation = -20182.575327 eV Core-core repulsion = 17154.429553 eV Total energy + Delta-G solvation = -3028.145774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.81531 -39.87241 -37.39954 -36.31707 -34.98697 -32.53135 -31.79864 -31.43638 -28.47964 -28.27744 -25.66892 -24.63216 -23.85226 -22.49604 -21.41370 -19.74449 -18.62690 -18.48509 -17.79207 -16.96431 -16.60967 -16.31055 -15.94961 -15.60031 -15.31478 -14.85753 -14.58975 -14.48504 -14.30376 -13.74543 -13.39250 -13.35231 -13.26193 -13.14228 -13.07898 -12.68357 -12.61528 -12.46014 -12.14148 -12.02077 -11.69417 -11.64284 -11.52500 -11.07961 -10.75626 -10.60412 -10.30822 -9.78620 -8.88408 -8.18561 -6.33511 0.41413 0.54840 1.28030 1.39731 1.41372 1.52677 1.60858 2.16921 2.40107 2.98754 3.10669 3.51741 3.71793 3.95941 4.02734 4.10770 4.12763 4.36475 4.45486 4.59091 4.63174 4.69653 4.72369 4.78023 4.85361 4.86744 5.07476 5.09595 5.23878 5.28488 5.31416 5.32962 5.40661 5.47632 5.58935 5.69908 5.75028 5.81700 6.06551 6.11072 6.23872 6.46028 6.79225 7.14922 7.35048 8.89602 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.039443 B = 0.003286 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.714026 B = 8518.703747 C = 8576.744015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C -0.045 4.045 4 C -0.145 4.145 5 C -0.137 4.137 6 C 0.516 3.484 7 O -0.563 6.563 8 N -0.653 5.653 9 C 0.120 3.880 10 C -0.125 4.125 11 C -0.121 4.121 12 C -0.074 4.074 13 C 0.057 3.943 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.266 1.266 22 C -0.112 4.112 23 C -0.127 4.127 24 H 0.120 0.880 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.426 0.574 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.007 0.993 37 H -0.002 1.002 38 H 0.266 0.734 39 H 0.128 0.872 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.669 1.888 -20.484 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.169 4.169 3 C -0.048 4.048 4 C -0.202 4.202 5 C -0.194 4.194 6 C 0.305 3.695 7 O -0.441 6.441 8 N -0.299 5.299 9 C 0.026 3.974 10 C -0.146 4.146 11 C -0.140 4.140 12 C -0.075 4.075 13 C 0.020 3.980 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.131 4.131 23 C -0.147 4.147 24 H 0.138 0.862 25 H 0.124 0.876 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.265 0.735 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.025 0.975 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.619 1.222 -19.820 26.547 hybrid contribution 1.220 -0.091 0.370 1.278 sum -16.399 1.131 -19.450 25.466 Atomic orbital electron populations 1.24186 0.95363 1.03445 0.98718 1.22539 0.96342 0.96492 1.01554 1.19918 0.95631 0.96890 0.92331 1.22034 0.98536 0.95771 1.03855 1.21871 0.99149 1.03074 0.95286 1.21420 0.79296 0.81099 0.87639 1.90718 1.66381 1.39232 1.47720 1.43351 1.38359 1.20141 1.28086 1.17626 0.93727 0.94286 0.91764 1.20972 0.96950 0.98304 0.98331 1.20909 0.98591 0.97763 0.96703 1.20400 0.95713 0.93749 0.97645 1.18087 0.92814 0.95722 0.91346 1.21387 0.92568 1.49042 0.93565 0.92588 1.25966 1.03800 0.94838 0.94945 1.70090 1.33484 1.50830 1.02750 0.85406 0.78371 0.78712 0.78329 1.19360 1.20621 1.19067 1.20995 0.96997 0.97679 0.97425 1.21053 1.00392 0.97608 0.95682 0.86181 0.87561 0.88493 0.89945 0.88610 0.92479 0.93163 0.89006 0.90142 0.73471 0.86202 0.87349 0.97458 0.98397 0.92567 0.85443 0.82153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 13.70 67.78 0.93 -1.69 16 2 C -0.15 -2.77 8.00 25.65 0.21 -2.56 16 3 C -0.04 -0.71 0.84 -53.67 -0.05 -0.76 16 4 C -0.14 -1.44 7.02 71.99 0.51 -0.94 16 5 C -0.14 -1.58 8.36 71.98 0.60 -0.98 16 6 C 0.52 12.91 6.21 87.66 0.54 13.46 16 7 O -0.56 -19.82 13.72 -3.05 -0.04 -19.86 16 8 N -0.65 -14.68 5.12 -303.50 -1.55 -16.23 16 9 C 0.12 3.76 6.28 38.15 0.24 4.00 16 10 C -0.13 -4.78 8.66 22.39 0.19 -4.58 16 11 C -0.12 -5.27 9.69 22.25 0.22 -5.05 16 12 C -0.07 -3.43 5.07 -19.84 -0.10 -3.53 16 13 C 0.06 3.17 5.10 29.10 0.15 3.32 16 14 C -0.53 -30.72 9.09 25.60 0.23 -30.48 16 15 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 16 C 0.00 0.14 5.46 84.65 0.46 0.60 16 17 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 18 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C -0.11 -4.32 9.69 22.25 0.22 -4.10 16 23 C -0.13 -3.85 9.96 22.39 0.22 -3.62 16 24 H 0.12 1.30 5.69 -2.91 -0.02 1.28 16 25 H 0.11 1.37 8.06 -2.91 -0.02 1.35 16 26 H 0.10 2.07 8.06 -2.91 -0.02 2.04 16 27 H 0.08 0.52 7.45 -2.39 -0.02 0.50 16 28 H 0.10 0.57 7.50 -2.39 -0.02 0.55 16 29 H 0.06 0.70 7.50 -2.39 -0.02 0.69 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.67 7.69 -2.38 -0.02 0.65 16 33 H 0.43 5.85 7.68 -92.71 -0.71 5.14 16 34 H 0.12 4.60 6.42 -2.91 -0.02 4.58 16 35 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 36 H 0.01 0.41 8.08 -2.39 -0.02 0.39 16 37 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 40 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -74.12 334.84 5.60 -68.52 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.31 Total: 14.53 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 4.57 Total: -36.93 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.27 Total: -73.03 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.04 Total: -19.86 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -74.12 5.60 -68.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928402643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.844 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds