Wall clock time and date at job start Mon Mar 30 2020 01:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00188 * 2 1 4 4 C 1.53000 * 109.47319 * 124.99745 * 3 2 1 5 5 C 1.52998 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46870 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 4 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31521 * 120.00072 * 359.71988 * 16 14 13 18 18 Si 1.86807 * 120.00293 * 179.72747 * 16 14 13 19 19 H 1.48499 * 109.46814 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47322 * 119.99684 * 18 16 14 21 21 H 1.48500 * 109.47021 * 239.99886 * 18 16 14 22 22 C 1.38286 * 120.13848 * 0.24863 * 12 11 10 23 23 C 1.38122 * 120.06639 * 359.49448 * 22 12 11 24 24 H 1.07998 * 120.00311 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99958 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46976 * 5.00335 * 3 2 1 28 28 H 1.08995 * 109.47071 * 245.00250 * 3 2 1 29 29 H 1.09003 * 109.46615 * 60.00368 * 4 3 2 30 30 H 1.08995 * 109.47461 * 300.00266 * 4 3 2 31 31 H 1.09003 * 109.46894 * 60.00804 * 5 4 3 32 32 H 1.08999 * 109.47633 * 300.00097 * 5 4 3 33 33 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 34 34 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 37 37 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 38 38 H 0.97000 * 119.99850 * 179.97438 * 17 16 14 39 39 H 1.07996 * 119.96599 * 179.74614 * 22 12 11 40 40 H 1.08006 * 120.03084 * 180.25302 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6578 1.1812 6 6 4.7578 2.6851 2.3447 7 8 4.8220 1.7381 3.0997 8 7 5.5428 3.7620 2.5464 9 6 6.5087 3.7440 3.5588 10 6 7.1554 2.5585 3.8823 11 6 8.1079 2.5439 4.8824 12 6 8.4174 3.7080 5.5616 13 6 9.4567 3.6885 6.6526 14 6 10.8129 3.9715 6.0596 15 1 10.9122 4.1484 4.9988 16 6 11.9276 3.9996 6.8704 17 7 11.8067 3.7847 8.1623 18 14 13.6098 4.3430 6.1342 19 1 13.4764 4.5491 4.6697 20 1 14.1826 5.5638 6.7562 21 1 14.5077 3.1885 6.3915 22 6 7.7711 4.8890 5.2456 23 6 6.8214 4.9113 4.2429 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 3.7400 0.5065 1.0920 30 1 2.4773 1.2356 2.1130 31 1 3.0958 3.4846 1.2706 32 1 4.3584 2.7549 0.2499 33 1 5.4381 4.5495 1.9899 34 1 6.9139 1.6488 3.3526 35 1 8.6110 1.6222 5.1349 36 1 9.4657 2.7078 7.1282 37 1 9.2186 4.4501 7.3950 38 1 12.5910 3.8041 8.7327 39 1 8.0120 5.7957 5.7806 40 1 6.3199 5.8348 3.9938 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928403651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:23 Heat of formation + Delta-G solvation = -16.465237 kcal Electronic energy + Delta-G solvation = -19353.666998 eV Core-core repulsion = 16325.790722 eV Total energy + Delta-G solvation = -3027.876276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33819 -38.25939 -36.30407 -34.85396 -33.08323 -32.63168 -30.49756 -30.28244 -27.87664 -26.28280 -23.53104 -22.44083 -22.15545 -20.56039 -20.19265 -19.85390 -17.49922 -16.87130 -16.29402 -16.24257 -15.46049 -14.95997 -14.53407 -14.34612 -14.18337 -13.81791 -13.72141 -13.08122 -12.86924 -12.66666 -12.51415 -12.09616 -11.98297 -11.84470 -11.36329 -11.28064 -11.22026 -11.00739 -10.82079 -10.58592 -10.35913 -10.03059 -9.82799 -9.65663 -9.41016 -9.23546 -8.41805 -8.28247 -7.36842 -6.02762 -4.06767 1.86078 1.95539 2.06653 2.73629 3.13844 3.29800 3.37370 3.42322 4.38291 4.42463 4.49689 4.57873 4.67890 4.87837 4.93367 5.17090 5.24349 5.31126 5.31968 5.43904 5.45559 5.57440 5.61128 5.84125 5.95108 6.03965 6.08450 6.13060 6.20994 6.30655 6.44048 6.65078 6.79084 6.92132 7.17400 7.21591 7.51174 7.54082 7.72116 7.87932 7.93172 8.20076 8.33780 8.98861 9.56922 11.06831 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.044799 B = 0.002628 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.870786 B =10651.969467 C =10735.421938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.101 4.101 5 C -0.139 4.139 6 C 0.506 3.494 7 O -0.521 6.521 8 N -0.671 5.671 9 C 0.104 3.896 10 C -0.117 4.117 11 C -0.108 4.108 12 C -0.043 4.043 13 C 0.047 3.953 14 C -0.510 4.510 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.108 4.108 23 C -0.144 4.144 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.405 0.595 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.122 0.878 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.020 -1.098 -16.628 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.139 4.139 5 C -0.179 4.179 6 C 0.293 3.707 7 O -0.397 6.397 8 N -0.316 5.316 9 C 0.012 3.988 10 C -0.137 4.137 11 C -0.127 4.127 12 C -0.043 4.043 13 C 0.010 3.990 14 C -0.548 4.548 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.127 4.127 23 C -0.164 4.164 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.240 0.760 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.905 -1.817 -15.967 24.812 hybrid contribution 0.939 0.642 -0.613 1.292 sum -17.966 -1.175 -16.580 24.476 Atomic orbital electron populations 1.23850 0.95986 1.01796 1.01880 1.22971 0.96037 0.98642 0.99224 1.20800 0.98186 0.95509 0.98771 1.21295 0.97757 0.96177 0.98666 1.21699 0.98175 1.00850 0.97192 1.20833 0.80909 0.82462 0.86483 1.90738 1.67450 1.35204 1.46262 1.43475 1.35272 1.18126 1.34705 1.17534 0.92929 0.95310 0.93068 1.20975 0.96306 0.96997 0.99446 1.21000 0.96964 0.98753 0.95945 1.20714 0.94653 0.91863 0.97103 1.18358 0.90980 0.98400 0.91231 1.21104 0.90999 1.48288 0.94407 0.92412 1.25028 0.99246 0.95334 0.94850 1.69972 1.29842 1.49743 1.03757 0.86483 0.83990 0.77875 0.79380 1.19688 1.20969 1.20954 1.20892 0.96114 0.98448 0.97250 1.20744 1.01312 0.96485 0.97902 0.88592 0.88665 0.87308 0.91464 0.90880 0.90866 0.90925 0.88850 0.88673 0.76031 0.85931 0.86094 0.95277 0.95301 0.92911 0.86014 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.33 14.32 29.01 0.42 -0.92 16 2 C -0.15 -1.09 9.52 -36.03 -0.34 -1.43 16 3 C -0.10 -0.62 5.66 -27.89 -0.16 -0.78 16 4 C -0.10 -0.85 4.49 -26.73 -0.12 -0.97 16 5 C -0.14 -1.07 5.70 -27.88 -0.16 -1.22 16 6 C 0.51 6.35 7.57 -10.98 -0.08 6.26 16 7 O -0.52 -8.83 13.67 5.55 0.08 -8.76 16 8 N -0.67 -8.25 5.34 -9.86 -0.05 -8.30 16 9 C 0.10 1.72 6.28 -83.70 -0.53 1.20 16 10 C -0.12 -2.20 8.66 -39.39 -0.34 -2.54 16 11 C -0.11 -2.24 9.69 -39.61 -0.38 -2.63 16 12 C -0.04 -0.95 5.07 -104.59 -0.53 -1.48 16 13 C 0.05 1.23 5.10 -29.04 -0.15 1.08 16 14 C -0.51 -14.36 9.09 -34.44 -0.31 -14.68 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 18 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.11 -2.11 9.69 -39.61 -0.38 -2.50 16 23 C -0.14 -2.38 9.96 -39.39 -0.39 -2.77 16 24 H 0.10 0.57 8.06 -52.49 -0.42 0.14 16 25 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 26 H 0.11 0.76 8.06 -52.49 -0.42 0.33 16 27 H 0.07 0.39 7.79 -51.93 -0.40 -0.02 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 3.40 8.82 -40.82 -0.36 3.04 16 34 H 0.12 2.27 6.42 -52.49 -0.34 1.93 16 35 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 36 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 40 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -32.78 343.41 -8.77 -41.55 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.12 Total: 1.45 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -3.56 Total: -21.86 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.68 Total: -34.15 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.78 -8.77 -41.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928403651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.083 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds