Wall clock time and date at job start Mon Mar 30 2020 01:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00188 * 2 1 4 4 C 1.53000 * 109.47319 * 124.99745 * 3 2 1 5 5 C 1.52998 * 109.47050 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46870 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 4 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31521 * 120.00072 * 359.71988 * 16 14 13 18 18 Si 1.86807 * 120.00293 * 179.72747 * 16 14 13 19 19 H 1.48499 * 109.46814 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47322 * 119.99684 * 18 16 14 21 21 H 1.48500 * 109.47021 * 239.99886 * 18 16 14 22 22 C 1.38286 * 120.13848 * 0.24863 * 12 11 10 23 23 C 1.38122 * 120.06639 * 359.49448 * 22 12 11 24 24 H 1.07998 * 120.00311 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99958 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46976 * 5.00335 * 3 2 1 28 28 H 1.08995 * 109.47071 * 245.00250 * 3 2 1 29 29 H 1.09003 * 109.46615 * 60.00368 * 4 3 2 30 30 H 1.08995 * 109.47461 * 300.00266 * 4 3 2 31 31 H 1.09003 * 109.46894 * 60.00804 * 5 4 3 32 32 H 1.08999 * 109.47633 * 300.00097 * 5 4 3 33 33 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 34 34 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 37 37 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 38 38 H 0.97000 * 119.99850 * 179.97438 * 17 16 14 39 39 H 1.07996 * 119.96599 * 179.74614 * 22 12 11 40 40 H 1.08006 * 120.03084 * 180.25302 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6578 1.1812 6 6 4.7578 2.6851 2.3447 7 8 4.8220 1.7381 3.0997 8 7 5.5428 3.7620 2.5464 9 6 6.5087 3.7440 3.5588 10 6 7.1554 2.5585 3.8823 11 6 8.1079 2.5439 4.8824 12 6 8.4174 3.7080 5.5616 13 6 9.4567 3.6885 6.6526 14 6 10.8129 3.9715 6.0596 15 1 10.9122 4.1484 4.9988 16 6 11.9276 3.9996 6.8704 17 7 11.8067 3.7847 8.1623 18 14 13.6098 4.3430 6.1342 19 1 13.4764 4.5491 4.6697 20 1 14.1826 5.5638 6.7562 21 1 14.5077 3.1885 6.3915 22 6 7.7711 4.8890 5.2456 23 6 6.8214 4.9113 4.2429 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 3.7400 0.5065 1.0920 30 1 2.4773 1.2356 2.1130 31 1 3.0958 3.4846 1.2706 32 1 4.3584 2.7549 0.2499 33 1 5.4381 4.5495 1.9899 34 1 6.9139 1.6488 3.3526 35 1 8.6110 1.6222 5.1349 36 1 9.4657 2.7078 7.1282 37 1 9.2186 4.4501 7.3950 38 1 12.5910 3.8041 8.7327 39 1 8.0120 5.7957 5.7806 40 1 6.3199 5.8348 3.9938 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928403651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:22 Heat of formation + Delta-G solvation = -35.248365 kcal Electronic energy + Delta-G solvation = -19354.481496 eV Core-core repulsion = 16325.790722 eV Total energy + Delta-G solvation = -3028.690774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.49231 -39.63682 -36.94935 -36.20942 -34.97563 -33.40594 -32.13864 -31.78081 -29.02315 -27.66114 -25.19614 -23.89443 -23.20854 -21.86281 -21.14833 -20.61803 -18.67353 -18.48541 -17.94334 -17.00976 -16.80896 -16.26587 -15.93784 -15.58158 -15.37823 -14.84911 -14.56698 -14.45109 -14.33354 -14.26653 -13.70792 -13.33491 -13.20962 -13.17940 -12.64818 -12.60574 -12.45821 -12.44717 -12.02776 -11.75204 -11.64552 -11.60072 -11.53133 -11.08284 -10.73959 -10.61345 -10.17181 -9.77667 -8.86419 -8.18788 -6.33757 0.43686 0.55802 1.39279 1.39923 1.43328 1.53548 1.67426 2.14364 2.39754 3.00065 3.10205 3.71056 3.86542 4.05712 4.09778 4.13939 4.34322 4.36656 4.39416 4.58704 4.64428 4.67153 4.70253 4.75051 4.83527 4.96116 5.09332 5.10494 5.24926 5.31911 5.33474 5.41846 5.42314 5.50658 5.60762 5.75119 5.80614 5.92731 6.07192 6.11901 6.24824 6.52865 6.79173 7.23270 7.34758 8.89360 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.044799 B = 0.002628 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.870786 B =10651.969467 C =10735.421938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C -0.088 4.088 4 C -0.100 4.100 5 C -0.126 4.126 6 C 0.501 3.499 7 O -0.571 6.571 8 N -0.658 5.658 9 C 0.119 3.881 10 C -0.125 4.125 11 C -0.122 4.122 12 C -0.077 4.077 13 C 0.057 3.943 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.278 1.278 22 C -0.114 4.114 23 C -0.129 4.129 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.429 0.571 34 H 0.122 0.878 35 H 0.108 0.892 36 H -0.002 1.002 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.126 0.874 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.300 0.803 -19.694 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.186 4.186 3 C -0.125 4.125 4 C -0.138 4.138 5 C -0.165 4.165 6 C 0.292 3.708 7 O -0.449 6.449 8 N -0.305 5.305 9 C 0.025 3.975 10 C -0.146 4.146 11 C -0.140 4.140 12 C -0.078 4.078 13 C 0.020 3.980 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.792 3.208 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.204 1.204 22 C -0.133 4.133 23 C -0.149 4.149 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.121 0.879 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.268 0.732 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.016 0.984 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.212 0.113 -19.075 27.792 hybrid contribution 1.192 0.001 0.307 1.231 sum -19.020 0.114 -18.768 26.721 Atomic orbital electron populations 1.24016 0.95967 1.02513 1.01113 1.23113 0.96448 0.99082 0.99963 1.20754 0.97950 0.95466 0.98302 1.21243 0.97664 0.96234 0.98635 1.21753 0.97650 1.01309 0.95829 1.21819 0.80816 0.81280 0.86922 1.90735 1.68915 1.36991 1.48250 1.43447 1.33906 1.19376 1.33758 1.17641 0.92403 0.94318 0.93108 1.20990 0.96215 0.98250 0.99104 1.20919 0.98097 0.97971 0.97061 1.20408 0.95807 0.93892 0.97655 1.18095 0.92183 0.95723 0.92037 1.21410 0.92297 1.48283 0.94389 0.92605 1.25980 1.03582 0.94914 0.95217 1.70100 1.31227 1.50603 1.05216 0.85349 0.78585 0.77987 0.78835 1.18797 1.19964 1.20362 1.21002 0.96596 0.97400 0.98259 1.21063 0.99753 0.98169 0.95906 0.88249 0.87704 0.87869 0.90047 0.89441 0.92831 0.93084 0.85509 0.85600 0.73178 0.85997 0.87362 0.98368 0.97481 0.92581 0.85563 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.36 14.32 67.78 0.97 -1.39 16 2 C -0.17 -2.19 9.52 25.64 0.24 -1.94 16 3 C -0.09 -0.90 5.66 29.85 0.17 -0.73 16 4 C -0.10 -1.49 4.49 30.59 0.14 -1.36 16 5 C -0.13 -1.43 5.70 29.85 0.17 -1.26 16 6 C 0.50 11.26 7.57 87.66 0.66 11.92 16 7 O -0.57 -18.97 13.67 -3.04 -0.04 -19.01 16 8 N -0.66 -13.75 5.34 -303.51 -1.62 -15.37 16 9 C 0.12 3.68 6.28 38.15 0.24 3.92 16 10 C -0.13 -4.72 8.66 22.39 0.19 -4.52 16 11 C -0.12 -5.29 9.69 22.25 0.22 -5.07 16 12 C -0.08 -3.56 5.07 -19.84 -0.10 -3.66 16 13 C 0.06 3.14 5.10 29.10 0.15 3.29 16 14 C -0.53 -30.66 9.09 25.60 0.23 -30.42 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 16 C 0.00 0.05 5.46 84.65 0.46 0.52 16 17 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 18 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 C -0.11 -4.40 9.69 22.25 0.22 -4.18 16 23 C -0.13 -3.88 9.96 22.39 0.22 -3.65 16 24 H 0.10 1.06 8.06 -2.91 -0.02 1.04 16 25 H 0.10 1.01 7.84 -2.91 -0.02 0.99 16 26 H 0.10 1.40 8.06 -2.91 -0.02 1.38 16 27 H 0.08 0.63 7.79 -2.39 -0.02 0.61 16 28 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 31 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.43 4.95 8.82 -92.71 -0.82 4.13 16 34 H 0.12 4.58 6.42 -2.91 -0.02 4.56 16 35 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 37 H 0.01 0.40 8.08 -2.39 -0.02 0.38 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -75.09 343.41 5.03 -70.05 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.20 Total: 12.85 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 4.18 Total: -38.54 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.34 Total: -72.20 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.04 Total: -19.01 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -75.09 5.03 -70.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928403651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.806 kcal (2) G-P(sol) polarization free energy of solvation -75.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds