Wall clock time and date at job start Mon Mar 30 2020 01:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50699 * 119.99824 * 2 1 4 4 C 1.33018 * 120.00055 * 179.97438 * 2 1 3 5 5 C 1.50701 * 119.99794 * 174.20292 * 4 2 1 6 6 C 1.47063 * 119.99629 * 354.20810 * 4 2 1 7 7 O 1.21614 * 120.00552 * 5.17096 * 6 4 2 8 8 N 1.34779 * 119.99615 * 185.16870 * 6 4 2 9 9 C 1.39834 * 120.00330 * 185.14625 * 8 6 4 10 10 C 1.38892 * 120.07505 * 213.13907 * 9 8 6 11 11 C 1.38103 * 119.92530 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07513 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.93080 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.46837 * 89.99840 * 13 12 11 15 15 H 1.08001 * 120.00195 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99914 * 180.27506 * 14 13 12 17 17 N 1.31515 * 120.00206 * 359.72986 * 16 14 13 18 18 Si 1.86799 * 120.00362 * 179.72502 * 16 14 13 19 19 H 1.48501 * 109.46703 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47133 * 120.00376 * 18 16 14 21 21 H 1.48496 * 109.47537 * 240.00459 * 18 16 14 22 22 C 1.38288 * 120.14498 * 0.23314 * 12 11 10 23 23 C 1.38103 * 120.07215 * 359.49241 * 22 12 11 24 24 H 1.08997 * 109.47400 * 244.26846 * 1 2 3 25 25 H 1.09003 * 109.47413 * 4.27827 * 1 2 3 26 26 H 1.09008 * 109.46868 * 124.27249 * 1 2 3 27 27 H 1.08991 * 109.47218 * 244.64698 * 3 2 1 28 28 H 1.09005 * 109.47425 * 4.65094 * 3 2 1 29 29 H 1.09006 * 109.46694 * 124.64362 * 3 2 1 30 30 H 1.08991 * 109.47273 * 274.74784 * 5 4 2 31 31 H 1.08997 * 109.47297 * 34.75344 * 5 4 2 32 32 H 1.09004 * 109.46629 * 154.74861 * 5 4 2 33 33 H 0.97007 * 120.00092 * 5.14694 * 8 6 4 34 34 H 1.07999 * 120.03411 * 359.97438 * 10 9 8 35 35 H 1.08005 * 119.96341 * 179.97438 * 11 10 9 36 36 H 1.09002 * 109.46852 * 330.00428 * 13 12 11 37 37 H 1.08997 * 109.47484 * 210.00571 * 13 12 11 38 38 H 0.96999 * 120.00562 * 179.97438 * 17 16 14 39 39 H 1.08007 * 119.96439 * 179.71705 * 22 12 11 40 40 H 1.07998 * 120.04116 * 180.23476 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1721 -1.1520 0.0005 5 6 3.6733 -1.1553 -0.1313 6 6 1.4423 -2.4222 0.1296 7 8 0.2263 -2.4265 0.1413 8 7 2.1213 -3.5817 0.2350 9 6 1.4308 -4.7976 0.2494 10 6 1.9147 -5.8640 0.9961 11 6 1.2305 -7.0636 1.0076 12 6 0.0653 -7.2039 0.2764 13 6 -0.6784 -8.5145 0.2909 14 6 -1.6818 -8.5103 1.4153 15 1 -1.7722 -7.6449 2.0551 16 6 -2.4807 -9.6132 1.6304 17 7 -2.3709 -10.6668 0.8511 18 14 -3.7192 -9.6110 3.0289 19 1 -3.6468 -8.3160 3.7520 20 1 -5.0865 -9.7951 2.4795 21 1 -3.4091 -10.7200 3.9665 22 6 -0.4163 -6.1457 -0.4723 23 6 0.2599 -4.9416 -0.4837 24 1 -0.3634 -0.4461 0.9257 25 1 -0.3634 1.0248 -0.0767 26 1 -0.3633 -0.5788 -0.8493 27 1 2.8232 1.3998 -0.9286 28 1 1.5551 2.1320 0.0833 29 1 2.9481 1.3276 0.8455 30 1 3.9455 -1.1233 -1.1862 31 1 4.0846 -0.2830 0.3767 32 1 4.0756 -2.0621 0.3204 33 1 3.0891 -3.5728 0.3009 34 1 2.8254 -5.7555 1.5664 35 1 1.6065 -7.8935 1.5878 36 1 0.0281 -9.3315 0.4376 37 1 -1.1969 -8.6487 -0.6584 38 1 -2.9327 -11.4429 1.0026 39 1 -1.3243 -6.2599 -1.0460 40 1 -0.1187 -4.1144 -1.0657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928404138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:57 Heat of formation + Delta-G solvation = -11.368184 kcal Electronic energy + Delta-G solvation = -20053.149942 eV Core-core repulsion = 17025.494690 eV Total energy + Delta-G solvation = -3027.655251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46513 -38.39639 -36.26353 -34.90339 -33.04056 -31.17892 -30.26469 -29.90364 -28.20166 -26.59301 -25.16162 -23.39206 -22.33796 -21.43703 -20.01354 -18.69487 -16.99509 -16.39994 -16.26801 -15.49274 -15.02144 -14.73444 -14.46753 -14.19617 -14.08863 -13.63521 -13.17446 -13.01276 -12.84156 -12.63331 -12.56848 -12.46015 -12.38464 -11.95486 -11.88367 -11.59403 -11.38211 -11.21606 -10.75958 -10.54056 -10.31276 -9.96141 -9.58395 -9.36373 -9.21133 -8.99534 -8.39185 -8.25212 -7.31020 -6.00428 -4.04078 1.14047 2.04601 2.11820 3.21096 3.27637 3.32471 3.39980 3.46378 4.41704 4.49807 4.57790 4.61166 4.77660 4.91856 5.14106 5.27560 5.33004 5.33824 5.46061 5.47917 5.54926 5.62160 5.64553 5.76421 5.94419 5.98819 6.12586 6.15459 6.23844 6.33527 6.40426 6.68311 6.85495 6.97313 7.20064 7.24195 7.54558 7.60980 7.75359 7.90008 7.95870 8.28754 8.36826 9.01835 9.59763 11.09141 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030758 B = 0.003452 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.106486 B = 8110.256428 C = 8605.104701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.038 4.038 3 C -0.124 4.124 4 C -0.207 4.207 5 C -0.112 4.112 6 C 0.547 3.453 7 O -0.519 6.519 8 N -0.667 5.667 9 C 0.107 3.893 10 C -0.146 4.146 11 C -0.108 4.108 12 C -0.044 4.044 13 C 0.048 3.952 14 C -0.509 4.509 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.108 4.108 23 C -0.117 4.117 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.403 0.597 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.121 0.879 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.283 20.842 -2.780 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.040 4.040 3 C -0.180 4.180 4 C -0.210 4.210 5 C -0.168 4.168 6 C 0.337 3.663 7 O -0.397 6.397 8 N -0.312 5.312 9 C 0.015 3.985 10 C -0.166 4.166 11 C -0.126 4.126 12 C -0.044 4.044 13 C 0.011 3.989 14 C -0.548 4.548 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.127 4.127 23 C -0.137 4.137 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.239 0.761 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.365 20.710 -2.816 24.284 hybrid contribution -0.164 -0.157 0.886 0.915 sum 12.201 20.553 -1.930 23.980 Atomic orbital electron populations 1.21069 0.90569 1.01088 1.04490 1.22413 0.96829 0.93902 0.90855 1.21012 1.00285 0.94120 1.02607 1.21128 0.96284 0.92518 1.11038 1.20756 0.91107 1.02638 1.02327 1.18392 0.87372 0.83750 0.76767 1.90815 1.13401 1.86837 1.48633 1.43357 1.10182 1.04509 1.73174 1.17520 0.95825 0.85177 0.99996 1.20740 1.01542 0.93801 1.00502 1.20871 0.95537 0.96584 0.99641 1.20700 0.93202 0.97957 0.92555 1.18351 0.94561 0.88023 0.97955 1.21129 1.18805 1.00912 1.13907 0.92397 1.25011 0.97355 0.95490 0.96531 1.69968 1.40013 1.05058 1.38419 0.86489 0.81084 0.78070 0.82162 1.19642 1.20943 1.20972 1.20996 0.99529 0.92117 1.00014 1.20986 0.95418 0.97868 0.99468 0.89889 0.92939 0.89851 0.90644 0.91266 0.90613 0.91001 0.91054 0.92097 0.76056 0.86905 0.86054 0.95328 0.95322 0.92945 0.86135 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 8.34 36.01 0.30 -0.97 16 2 C -0.04 -0.37 6.11 -101.16 -0.62 -0.99 16 3 C -0.12 -0.76 8.84 36.00 0.32 -0.44 16 4 C -0.21 -2.16 5.99 -102.86 -0.62 -2.78 16 5 C -0.11 -0.77 9.37 36.01 0.34 -0.44 16 6 C 0.55 7.80 7.45 -12.68 -0.09 7.71 16 7 O -0.52 -9.14 10.77 5.27 0.06 -9.09 16 8 N -0.67 -9.07 5.29 -10.94 -0.06 -9.13 16 9 C 0.11 1.84 6.28 -83.72 -0.53 1.32 16 10 C -0.15 -2.47 9.96 -39.39 -0.39 -2.86 16 11 C -0.11 -2.13 9.69 -39.61 -0.38 -2.52 16 12 C -0.04 -0.98 5.07 -104.59 -0.53 -1.51 16 13 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 14 C -0.51 -14.62 9.09 -34.44 -0.31 -14.94 16 15 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 18 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 22 C -0.11 -2.26 9.69 -39.61 -0.38 -2.65 16 23 C -0.12 -2.24 8.66 -39.39 -0.34 -2.59 16 24 H 0.08 1.06 7.29 -51.93 -0.38 0.69 16 25 H 0.05 0.45 7.72 -51.93 -0.40 0.04 16 26 H 0.08 1.05 7.17 -51.92 -0.37 0.68 16 27 H 0.07 0.39 8.13 -51.93 -0.42 -0.04 16 28 H 0.07 0.37 7.72 -51.93 -0.40 -0.03 16 29 H 0.08 0.40 7.36 -51.93 -0.38 0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.39 6.55 -51.93 -0.34 0.05 16 32 H 0.06 0.37 6.28 -51.93 -0.33 0.05 16 33 H 0.40 4.06 6.75 -40.82 -0.28 3.78 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 36 H 0.03 0.77 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 40 H 0.12 2.32 6.40 -52.49 -0.34 1.98 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -32.72 331.20 -8.49 -41.21 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.71 Total: 2.07 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -3.49 Total: -20.97 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.68 Total: -35.21 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.06 Total: -9.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.72 -8.49 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928404138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.837 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds