Wall clock time and date at job start Mon Mar 30 2020 01:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47027 * 2 1 4 4 C 1.33019 * 119.99606 * 233.08250 * 3 2 1 5 5 C 1.50699 * 120.00490 * 354.00146 * 4 3 2 6 6 C 1.47068 * 119.99577 * 174.00343 * 4 3 2 7 7 O 1.21628 * 120.00011 * 359.97438 * 6 4 3 8 8 N 1.34775 * 120.00013 * 180.02562 * 6 4 3 9 9 C 1.39829 * 119.99874 * 175.29090 * 8 6 4 10 10 C 1.38897 * 120.07153 * 214.75985 * 9 8 6 11 11 C 1.38110 * 119.92857 * 179.72373 * 10 9 8 12 12 C 1.38284 * 120.06717 * 0.54480 * 11 10 9 13 13 C 1.50704 * 119.92273 * 179.70057 * 12 11 10 14 14 C 1.50697 * 109.47620 * 270.02584 * 13 12 11 15 15 H 1.08007 * 119.99264 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00391 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99930 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00081 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47371 * 89.99687 * 18 16 14 20 20 H 1.48503 * 109.47263 * 209.99706 * 18 16 14 21 21 H 1.48502 * 109.47344 * 329.99640 * 18 16 14 22 22 C 1.38279 * 120.14974 * 359.73189 * 12 11 10 23 23 C 1.38108 * 120.07556 * 359.97438 * 22 12 11 24 24 H 1.09001 * 109.47409 * 60.00083 * 1 2 3 25 25 H 1.09009 * 109.47214 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47469 * 299.99628 * 1 2 3 27 27 H 1.09001 * 109.47118 * 120.00381 * 2 1 3 28 28 H 1.09003 * 109.46735 * 240.00279 * 2 1 3 29 29 H 1.07995 * 119.99800 * 53.08227 * 3 2 1 30 30 H 1.09001 * 109.46857 * 84.71239 * 5 4 3 31 31 H 1.08998 * 109.47055 * 204.71130 * 5 4 3 32 32 H 1.08999 * 109.46788 * 324.71169 * 5 4 3 33 33 H 0.96996 * 119.99967 * 355.29089 * 8 6 4 34 34 H 1.08005 * 120.03637 * 359.97096 * 10 9 8 35 35 H 1.07997 * 119.96672 * 180.27544 * 11 10 9 36 36 H 1.09003 * 109.47082 * 30.02894 * 13 12 11 37 37 H 1.09004 * 109.46529 * 150.02381 * 13 12 11 38 38 H 0.96997 * 120.00404 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.96694 * 180.02562 * 22 12 11 40 40 H 1.08000 * 120.03865 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9063 1.8172 -0.9210 5 6 3.4971 0.8157 -1.8797 6 6 3.2962 3.2328 -1.0038 7 8 2.8190 4.0412 -0.2303 8 7 4.1814 3.6346 -1.9373 9 6 4.4777 4.9936 -2.0807 10 6 4.7449 5.5186 -3.3386 11 6 5.0316 6.8625 -3.4776 12 6 5.0640 7.6827 -2.3648 13 6 5.3839 9.1473 -2.5195 14 6 6.8723 9.3516 -2.4026 15 1 7.5217 8.5054 -2.2328 16 6 7.4050 10.6186 -2.5113 17 7 6.6142 11.6489 -2.7175 18 14 9.2501 10.8716 -2.3671 19 1 9.8711 10.7644 -3.7119 20 1 9.5226 12.2175 -1.8019 21 1 9.8237 9.8339 -1.4729 22 6 4.8042 7.1621 -1.1104 23 6 4.5108 5.8203 -0.9651 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.6826 2.1172 0.7478 30 1 2.8214 0.6785 -2.7239 31 1 4.4589 1.1810 -2.2397 32 1 3.6383 -0.1367 -1.3688 33 1 4.6129 2.9810 -2.5095 34 1 4.7244 4.8775 -4.2075 35 1 5.2350 7.2723 -4.4559 36 1 5.0455 9.4919 -3.4967 37 1 4.8768 9.7143 -1.7387 38 1 6.9888 12.5403 -2.7937 39 1 4.8298 7.8055 -0.2433 40 1 4.3084 5.4142 0.0149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928406795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:26 Heat of formation + Delta-G solvation = -13.580044 kcal Electronic energy + Delta-G solvation = -19680.845905 eV Core-core repulsion = 16653.094740 eV Total energy + Delta-G solvation = -3027.751165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.40627 -38.30149 -36.37238 -34.90476 -33.08380 -32.13509 -30.33604 -30.22132 -27.32764 -26.75717 -24.63634 -23.13632 -22.34317 -21.34903 -20.09161 -18.72794 -17.60479 -16.77848 -16.28515 -15.47054 -15.25555 -14.91253 -14.47265 -14.35062 -14.18016 -13.88983 -13.36384 -13.02235 -12.97562 -12.75403 -12.55420 -12.48707 -12.14547 -11.94554 -11.64148 -11.38344 -11.26379 -11.21708 -10.80980 -10.59681 -10.34905 -9.99499 -9.79246 -9.38732 -9.31224 -9.22254 -8.40326 -8.25698 -7.35966 -6.01537 -4.05546 1.09570 2.03192 2.11376 3.11011 3.27455 3.31700 3.37941 3.42403 4.37337 4.42821 4.55105 4.60159 4.71290 4.81302 4.91124 5.14466 5.21574 5.30865 5.32418 5.45878 5.51099 5.56469 5.59247 5.64408 5.80192 5.97895 6.07474 6.12660 6.18422 6.23028 6.26028 6.68333 6.83845 6.94887 7.19201 7.23910 7.53639 7.56280 7.74194 7.89497 7.94265 8.22066 8.35044 8.99775 9.58026 11.08078 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.045024 B = 0.002934 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.741026 B = 9542.472581 C = 9658.069739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.069 4.069 4 C -0.188 4.188 5 C -0.118 4.118 6 C 0.548 3.452 7 O -0.526 6.526 8 N -0.663 5.663 9 C 0.101 3.899 10 C -0.143 4.143 11 C -0.109 4.109 12 C -0.042 4.042 13 C 0.048 3.952 14 C -0.510 4.510 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.110 4.110 23 C -0.117 4.117 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.405 0.595 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.121 0.879 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.393 -24.187 1.660 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.089 4.089 4 C -0.191 4.191 5 C -0.174 4.174 6 C 0.337 3.663 7 O -0.404 6.404 8 N -0.308 5.308 9 C 0.009 3.991 10 C -0.163 4.163 11 C -0.128 4.128 12 C -0.042 4.042 13 C 0.011 3.989 14 C -0.548 4.548 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.128 4.128 23 C -0.136 4.136 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.145 0.855 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.241 0.759 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.750 -23.456 2.180 25.130 hybrid contribution 1.301 -0.036 -0.276 1.330 sum -7.449 -23.492 1.904 24.718 Atomic orbital electron populations 1.21699 0.94336 1.01973 1.02531 1.20851 0.96690 0.93588 1.03287 1.23621 0.92461 0.97426 0.95376 1.21391 1.02829 0.93314 1.01562 1.20838 1.00478 0.97781 0.98338 1.18452 0.78531 0.88622 0.80652 1.90799 1.54355 1.54552 1.40686 1.43302 1.42922 1.07033 1.37553 1.17542 1.04572 0.82893 0.94122 1.20757 1.05017 0.95972 0.94557 1.20878 1.00508 0.92174 0.99226 1.20721 0.92391 0.99092 0.92009 1.18355 0.96905 0.85428 0.98239 1.21067 0.91376 0.92967 1.49425 0.92473 1.25017 0.98105 0.96033 0.95257 1.69958 1.34814 0.99076 1.49498 0.86538 0.85401 0.77467 0.78304 1.20617 1.21178 1.19825 1.21020 0.99811 0.94208 0.97779 1.21139 1.00764 0.93902 0.97833 0.92377 0.92168 0.92265 0.90179 0.90446 0.85456 0.90895 0.91743 0.90726 0.75893 0.86850 0.86002 0.95316 0.95288 0.92862 0.86092 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.15 0.37 -0.49 16 2 C -0.11 -0.66 5.98 -27.88 -0.17 -0.82 16 3 C -0.07 -0.64 9.08 -36.12 -0.33 -0.96 16 4 C -0.19 -1.90 5.99 -102.85 -0.62 -2.51 16 5 C -0.12 -0.77 8.65 36.01 0.31 -0.46 16 6 C 0.55 7.80 7.59 -12.68 -0.10 7.70 16 7 O -0.53 -9.52 13.65 5.25 0.07 -9.44 16 8 N -0.66 -8.98 5.28 -10.94 -0.06 -9.04 16 9 C 0.10 1.74 6.30 -83.72 -0.53 1.21 16 10 C -0.14 -2.41 9.97 -39.38 -0.39 -2.80 16 11 C -0.11 -2.16 9.69 -39.61 -0.38 -2.54 16 12 C -0.04 -0.93 5.07 -104.59 -0.53 -1.46 16 13 C 0.05 1.25 5.10 -29.03 -0.15 1.10 16 14 C -0.51 -14.45 9.09 -34.44 -0.31 -14.76 16 15 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 18 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.11 -2.31 9.69 -39.61 -0.38 -2.70 16 23 C -0.12 -2.26 8.69 -39.39 -0.34 -2.60 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.40 5.85 -51.93 -0.30 0.09 16 29 H 0.13 1.35 7.51 -52.49 -0.39 0.95 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 6.40 -51.93 -0.33 0.05 16 32 H 0.07 0.38 6.76 -51.93 -0.35 0.03 16 33 H 0.40 4.02 6.79 -40.82 -0.28 3.75 16 34 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 35 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 39 H 0.12 2.50 8.06 -52.48 -0.42 2.07 16 40 H 0.13 2.47 6.22 -52.49 -0.33 2.15 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -32.78 335.97 -8.60 -41.38 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.75 Total: 1.86 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -3.65 Total: -20.57 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.68 Total: -35.00 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.07 Total: -9.44 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.78 -8.60 -41.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928406795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.800 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds