Wall clock time and date at job start Mon Mar 30 2020 01:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47027 * 2 1 4 4 C 1.33019 * 119.99606 * 233.08250 * 3 2 1 5 5 C 1.50699 * 120.00490 * 354.00146 * 4 3 2 6 6 C 1.47068 * 119.99577 * 174.00343 * 4 3 2 7 7 O 1.21628 * 120.00011 * 359.97438 * 6 4 3 8 8 N 1.34775 * 120.00013 * 180.02562 * 6 4 3 9 9 C 1.39829 * 119.99874 * 175.29090 * 8 6 4 10 10 C 1.38897 * 120.07153 * 214.75985 * 9 8 6 11 11 C 1.38110 * 119.92857 * 179.72373 * 10 9 8 12 12 C 1.38284 * 120.06717 * 0.54480 * 11 10 9 13 13 C 1.50704 * 119.92273 * 179.70057 * 12 11 10 14 14 C 1.50697 * 109.47620 * 270.02584 * 13 12 11 15 15 H 1.08007 * 119.99264 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00391 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99930 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00081 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47371 * 89.99687 * 18 16 14 20 20 H 1.48503 * 109.47263 * 209.99706 * 18 16 14 21 21 H 1.48502 * 109.47344 * 329.99640 * 18 16 14 22 22 C 1.38279 * 120.14974 * 359.73189 * 12 11 10 23 23 C 1.38108 * 120.07556 * 359.97438 * 22 12 11 24 24 H 1.09001 * 109.47409 * 60.00083 * 1 2 3 25 25 H 1.09009 * 109.47214 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47469 * 299.99628 * 1 2 3 27 27 H 1.09001 * 109.47118 * 120.00381 * 2 1 3 28 28 H 1.09003 * 109.46735 * 240.00279 * 2 1 3 29 29 H 1.07995 * 119.99800 * 53.08227 * 3 2 1 30 30 H 1.09001 * 109.46857 * 84.71239 * 5 4 3 31 31 H 1.08998 * 109.47055 * 204.71130 * 5 4 3 32 32 H 1.08999 * 109.46788 * 324.71169 * 5 4 3 33 33 H 0.96996 * 119.99967 * 355.29089 * 8 6 4 34 34 H 1.08005 * 120.03637 * 359.97096 * 10 9 8 35 35 H 1.07997 * 119.96672 * 180.27544 * 11 10 9 36 36 H 1.09003 * 109.47082 * 30.02894 * 13 12 11 37 37 H 1.09004 * 109.46529 * 150.02381 * 13 12 11 38 38 H 0.96997 * 120.00404 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.96694 * 180.02562 * 22 12 11 40 40 H 1.08000 * 120.03865 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9063 1.8172 -0.9210 5 6 3.4971 0.8157 -1.8797 6 6 3.2962 3.2328 -1.0038 7 8 2.8190 4.0412 -0.2303 8 7 4.1814 3.6346 -1.9373 9 6 4.4777 4.9936 -2.0807 10 6 4.7449 5.5186 -3.3386 11 6 5.0316 6.8625 -3.4776 12 6 5.0640 7.6827 -2.3648 13 6 5.3839 9.1473 -2.5195 14 6 6.8723 9.3516 -2.4026 15 1 7.5217 8.5054 -2.2328 16 6 7.4050 10.6186 -2.5113 17 7 6.6142 11.6489 -2.7175 18 14 9.2501 10.8716 -2.3671 19 1 9.8711 10.7644 -3.7119 20 1 9.5226 12.2175 -1.8019 21 1 9.8237 9.8339 -1.4729 22 6 4.8042 7.1621 -1.1104 23 6 4.5108 5.8203 -0.9651 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.6826 2.1172 0.7478 30 1 2.8214 0.6785 -2.7239 31 1 4.4589 1.1810 -2.2397 32 1 3.6383 -0.1367 -1.3688 33 1 4.6129 2.9810 -2.5095 34 1 4.7244 4.8775 -4.2075 35 1 5.2350 7.2723 -4.4559 36 1 5.0455 9.4919 -3.4967 37 1 4.8768 9.7143 -1.7387 38 1 6.9888 12.5403 -2.7937 39 1 4.8298 7.8055 -0.2433 40 1 4.3084 5.4142 0.0149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928406795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:26 Heat of formation + Delta-G solvation = -32.302188 kcal Electronic energy + Delta-G solvation = -19681.657758 eV Core-core repulsion = 16653.094740 eV Total energy + Delta-G solvation = -3028.563018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.62460 -39.71949 -37.14127 -36.32962 -35.02326 -33.00471 -31.88912 -31.78039 -28.55956 -27.85753 -25.84708 -24.60853 -23.84847 -22.55228 -21.54437 -19.72544 -18.61220 -18.48624 -17.90690 -16.90836 -16.48447 -16.24665 -15.95874 -15.47594 -15.08383 -14.89136 -14.59379 -14.48915 -14.32267 -13.93973 -13.67047 -13.47341 -13.29411 -13.17726 -12.97087 -12.70100 -12.62200 -12.47246 -12.23088 -12.03798 -11.73600 -11.66331 -11.53100 -11.10117 -10.78258 -10.60552 -10.00709 -9.79305 -8.90636 -8.18904 -6.33638 0.13895 0.54026 0.64596 1.39468 1.41017 1.52498 2.03031 2.19720 2.40061 2.97718 3.10378 3.61195 3.93183 4.03459 4.13004 4.17010 4.26570 4.36289 4.44424 4.55873 4.61968 4.68988 4.71639 4.75386 4.86825 5.06661 5.09698 5.10350 5.13630 5.30376 5.31986 5.35028 5.40133 5.45802 5.52610 5.57161 5.61966 5.74736 6.05687 6.10743 6.23471 6.45803 6.78873 7.12174 7.34790 8.89367 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.045024 B = 0.002934 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.741026 B = 9542.472581 C = 9658.069739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.062 4.062 4 C -0.198 4.198 5 C -0.115 4.115 6 C 0.541 3.459 7 O -0.574 6.574 8 N -0.651 5.651 9 C 0.114 3.886 10 C -0.126 4.126 11 C -0.113 4.113 12 C -0.073 4.073 13 C 0.057 3.943 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.122 4.122 23 C -0.125 4.125 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.426 0.574 34 H 0.161 0.839 35 H 0.129 0.871 36 H 0.008 0.992 37 H -0.002 1.002 38 H 0.266 0.734 39 H 0.109 0.891 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -27.819 0.580 28.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.139 4.139 3 C -0.082 4.082 4 C -0.201 4.201 5 C -0.171 4.171 6 C 0.333 3.667 7 O -0.454 6.454 8 N -0.297 5.297 9 C 0.020 3.980 10 C -0.146 4.146 11 C -0.132 4.132 12 C -0.073 4.073 13 C 0.020 3.980 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.141 4.141 23 C -0.145 4.145 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.266 0.734 34 H 0.178 0.822 35 H 0.147 0.853 36 H 0.026 0.974 37 H 0.017 0.983 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.928 -27.139 1.077 28.294 hybrid contribution 0.923 1.005 0.121 1.370 sum -7.006 -26.134 1.198 27.083 Atomic orbital electron populations 1.21719 0.94184 1.02911 1.01863 1.20915 0.96663 0.91405 1.04870 1.23834 0.91441 0.98843 0.94090 1.21422 1.03825 0.91485 1.03356 1.20917 1.00833 0.97372 0.97975 1.19247 0.77684 0.90173 0.79582 1.90784 1.55977 1.56241 1.42420 1.43234 1.42817 1.05797 1.37860 1.17653 1.02292 0.84463 0.93575 1.21068 1.02628 0.95047 0.95826 1.20997 1.00323 0.93344 0.98495 1.20424 0.95860 0.97348 0.93716 1.18095 0.95945 0.88110 0.95829 1.21373 0.92447 0.93217 1.49463 0.92656 1.25961 1.03354 0.95626 0.94636 1.70085 1.37123 0.99621 1.50275 0.85409 0.79071 0.77539 0.78809 1.19335 1.20570 1.19149 1.20934 1.00883 0.95156 0.97089 1.21136 1.01259 0.93399 0.98753 0.93126 0.90411 0.92957 0.88738 0.88551 0.87769 0.89523 0.90888 0.88790 0.73366 0.82170 0.85314 0.97378 0.98323 0.92558 0.87254 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 71.98 0.71 -0.69 16 2 C -0.10 -0.94 5.98 29.85 0.18 -0.76 16 3 C -0.06 -1.04 9.08 24.52 0.22 -0.82 16 4 C -0.20 -3.54 5.99 -18.71 -0.11 -3.65 16 5 C -0.11 -1.03 8.65 71.24 0.62 -0.42 16 6 C 0.54 14.71 7.59 86.56 0.66 15.37 16 7 O -0.57 -20.98 13.65 -4.12 -0.06 -21.04 16 8 N -0.65 -15.99 5.28 -306.77 -1.62 -17.62 16 9 C 0.11 3.74 6.30 38.18 0.24 3.98 16 10 C -0.13 -3.92 9.97 22.40 0.22 -3.70 16 11 C -0.11 -4.41 9.69 22.25 0.22 -4.19 16 12 C -0.07 -3.40 5.07 -19.84 -0.10 -3.50 16 13 C 0.06 3.18 5.10 29.10 0.15 3.33 16 14 C -0.53 -30.83 9.09 25.60 0.23 -30.60 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 16 C 0.00 0.13 5.46 84.65 0.46 0.59 16 17 N -0.93 -57.19 13.29 21.44 0.28 -56.90 16 18 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C -0.12 -5.39 9.69 22.25 0.22 -5.18 16 23 C -0.13 -4.93 8.69 22.40 0.19 -4.73 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.10 0.57 5.85 -2.39 -0.01 0.56 16 29 H 0.10 2.22 7.51 -2.91 -0.02 2.20 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.53 6.40 -2.39 -0.02 0.52 16 32 H 0.09 0.52 6.76 -2.39 -0.02 0.50 16 33 H 0.43 6.80 6.79 -92.71 -0.63 6.18 16 34 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 35 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 36 H 0.01 0.46 8.08 -2.39 -0.02 0.44 16 37 H 0.00 -0.09 8.08 -2.38 -0.02 -0.11 16 38 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.12 4.96 6.22 -2.91 -0.02 4.94 16 Total: -1.00 -74.46 335.97 5.15 -69.31 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.41 Total: 14.22 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 4.11 Total: -34.97 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -1.34 Total: -74.52 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.06 Total: -21.04 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -74.46 5.15 -69.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928406795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.005 kcal (2) G-P(sol) polarization free energy of solvation -74.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds