Wall clock time and date at job start Mon Mar 30 2020 01:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47264 * 2 1 4 4 C 1.33017 * 119.99957 * 184.87372 * 3 2 1 5 5 C 1.50705 * 120.00140 * 174.71858 * 4 3 2 6 6 C 1.47063 * 120.00151 * 354.71307 * 4 3 2 7 7 O 1.21632 * 119.99651 * 5.02245 * 6 4 3 8 8 N 1.34772 * 120.00165 * 185.02132 * 6 4 3 9 9 C 1.39837 * 119.99880 * 184.24064 * 8 6 4 10 10 C 1.38888 * 120.07208 * 324.64365 * 9 8 6 11 11 C 1.38112 * 119.92740 * 179.72289 * 10 9 8 12 12 C 1.38292 * 120.06827 * 0.55304 * 11 10 9 13 13 C 1.50698 * 119.92511 * 179.69983 * 12 11 10 14 14 C 1.50699 * 109.47127 * 270.02042 * 13 12 11 15 15 H 1.07995 * 120.00449 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99669 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99648 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00168 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47117 * 90.00147 * 18 16 14 20 20 H 1.48507 * 109.47065 * 209.99696 * 18 16 14 21 21 H 1.48498 * 109.47539 * 329.99827 * 18 16 14 22 22 C 1.38286 * 120.14582 * 359.72059 * 12 11 10 23 23 C 1.38105 * 120.07618 * 0.02562 * 22 12 11 24 24 H 1.08995 * 109.47221 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47666 * 300.00508 * 1 2 3 26 26 H 1.09005 * 109.46814 * 59.99859 * 1 2 3 27 27 H 1.08999 * 109.47666 * 239.99492 * 2 1 3 28 28 H 1.09006 * 109.47121 * 119.99424 * 2 1 3 29 29 H 1.07996 * 120.00136 * 4.86881 * 3 2 1 30 30 H 1.08999 * 109.46932 * 270.00233 * 5 4 3 31 31 H 1.09000 * 109.46867 * 29.99860 * 5 4 3 32 32 H 1.08994 * 109.47039 * 149.99563 * 5 4 3 33 33 H 0.96994 * 119.99969 * 4.51045 * 8 6 4 34 34 H 1.07997 * 120.04296 * 359.97438 * 10 9 8 35 35 H 1.07992 * 119.96611 * 180.27556 * 11 10 9 36 36 H 1.09003 * 109.47355 * 30.02429 * 13 12 11 37 37 H 1.09005 * 109.47019 * 150.02078 * 13 12 11 38 38 H 0.96998 * 119.99713 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.96282 * 180.02562 * 22 12 11 40 40 H 1.07995 * 120.03968 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 3.3362 1.6652 -0.0979 5 6 3.8300 3.0840 -0.2178 6 6 4.2959 0.5509 -0.0889 7 8 3.8946 -0.5973 -0.0842 8 7 5.6201 0.8020 -0.0859 9 6 6.5323 -0.2547 -0.1670 10 6 6.2507 -1.4661 0.4512 11 6 7.1511 -2.5097 0.3645 12 6 8.3372 -2.3457 -0.3274 13 6 9.3205 -3.4844 -0.4144 14 6 10.2789 -3.4102 0.7462 15 1 10.1852 -2.6181 1.4742 16 6 11.2749 -4.3544 0.8792 17 7 12.1110 -4.2900 1.8923 18 14 11.4367 -5.7250 -0.3796 19 1 12.3400 -5.2878 -1.4742 20 1 12.0001 -6.9336 0.2742 21 1 10.0986 -6.0435 -0.9394 22 6 8.6232 -1.1390 -0.9393 23 6 7.7247 -0.0931 -0.8608 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3338 2.2406 0.0794 30 1 3.8842 3.3621 -1.2703 31 1 3.1425 3.7529 0.2998 32 1 4.8204 3.1631 0.2304 33 1 5.9403 1.7155 -0.0236 34 1 5.3268 -1.5933 0.9958 35 1 6.9308 -3.4534 0.8412 36 1 8.7829 -4.4321 -0.3817 37 1 9.8761 -3.4141 -1.3495 38 1 12.8119 -4.9540 1.9857 39 1 9.5502 -1.0143 -1.4793 40 1 7.9488 0.8491 -1.3385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928406796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:29 Heat of formation + Delta-G solvation = -8.171516 kcal Electronic energy + Delta-G solvation = -19936.562245 eV Core-core repulsion = 16909.045611 eV Total energy + Delta-G solvation = -3027.516634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50723 -38.42551 -35.81215 -34.92576 -33.13935 -32.38389 -30.65448 -30.32644 -27.31303 -27.08338 -24.07737 -22.57460 -22.31933 -21.77705 -20.14429 -19.31854 -17.26711 -16.74933 -16.49588 -15.51830 -15.05527 -14.60657 -14.58533 -14.14028 -14.05345 -13.84919 -13.39505 -13.25366 -12.97628 -12.84368 -12.68750 -12.42249 -12.31326 -11.85667 -11.63619 -11.55418 -11.40110 -11.30223 -10.81050 -10.40914 -10.23004 -10.01980 -9.74233 -9.36839 -9.32409 -9.20829 -8.56691 -8.31428 -7.39527 -6.05869 -4.04700 1.13485 1.96349 2.04728 3.15406 3.20830 3.30146 3.38015 3.41673 4.41041 4.43304 4.46394 4.57183 4.90228 5.03038 5.08833 5.19209 5.25980 5.26536 5.39685 5.43829 5.56122 5.58884 5.82642 5.89190 5.94749 5.95011 6.01432 6.06262 6.14362 6.18462 6.37912 6.59370 6.78336 6.85440 6.97730 7.06283 7.10120 7.52927 7.61205 7.63635 7.73758 8.20453 8.51671 8.99727 9.54639 11.07142 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033554 B = 0.003338 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.265210 B = 8387.145382 C = 8849.873015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.098 4.098 3 C -0.062 4.062 4 C -0.198 4.198 5 C -0.113 4.113 6 C 0.546 3.454 7 O -0.520 6.520 8 N -0.665 5.665 9 C 0.107 3.893 10 C -0.116 4.116 11 C -0.107 4.107 12 C -0.038 4.038 13 C 0.014 3.986 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.106 4.106 23 C -0.143 4.143 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.405 0.595 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.396 14.477 -5.406 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 C -0.081 4.081 4 C -0.201 4.201 5 C -0.170 4.170 6 C 0.336 3.664 7 O -0.398 6.398 8 N -0.311 5.311 9 C 0.015 3.985 10 C -0.136 4.136 11 C -0.125 4.125 12 C -0.039 4.039 13 C -0.023 4.023 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.125 4.125 23 C -0.163 4.163 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.143 0.857 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.241 0.759 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.555 13.603 -5.329 24.410 hybrid contribution 0.503 -0.112 -0.469 0.697 sum -19.052 13.491 -5.798 24.055 Atomic orbital electron populations 1.21904 0.96100 1.01939 1.01375 1.20856 0.94607 0.93425 1.04539 1.23748 0.94390 0.99019 0.90982 1.21422 0.94337 0.95112 1.09263 1.20768 1.01579 0.92154 1.02520 1.18467 0.82134 0.89192 0.76614 1.90796 1.78300 1.22251 1.48414 1.43335 1.05367 1.09402 1.72952 1.17550 0.90932 0.89217 1.00847 1.21114 1.00189 0.92572 0.99689 1.20988 0.93566 0.98759 0.99225 1.20300 0.94060 0.96029 0.93483 1.18807 0.93502 0.92018 0.97964 1.20948 1.11942 1.13265 1.08812 0.90817 1.25007 0.95332 0.97557 0.95420 1.69905 1.17955 1.36032 1.30059 0.86801 0.78900 0.81982 0.81816 1.20184 1.21283 1.18879 1.20847 0.98671 0.92463 1.00529 1.20755 0.94734 0.99648 1.01161 0.92423 0.92914 0.92914 0.89152 0.89396 0.85744 0.90941 0.91110 0.91832 0.75901 0.85301 0.86043 0.95390 0.95856 0.92631 0.85953 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.85 37.16 0.37 -0.83 16 2 C -0.10 -0.98 4.51 -27.88 -0.13 -1.11 16 3 C -0.06 -0.54 9.25 -36.12 -0.33 -0.87 16 4 C -0.20 -1.92 6.00 -102.85 -0.62 -2.53 16 5 C -0.11 -0.73 9.75 36.01 0.35 -0.38 16 6 C 0.55 7.30 7.55 -12.68 -0.10 7.21 16 7 O -0.52 -8.50 10.56 5.25 0.06 -8.44 16 8 N -0.67 -8.66 5.28 -10.94 -0.06 -8.72 16 9 C 0.11 1.78 6.29 -83.72 -0.53 1.25 16 10 C -0.12 -2.15 8.69 -39.39 -0.34 -2.49 16 11 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 12 C -0.04 -0.82 5.07 -104.59 -0.53 -1.35 16 13 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 14 C -0.51 -14.64 9.65 -34.44 -0.33 -14.97 16 15 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 18 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 22 C -0.11 -2.03 9.69 -39.61 -0.38 -2.41 16 23 C -0.14 -2.33 9.97 -39.38 -0.39 -2.73 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 1.09 7.10 -51.93 -0.37 0.72 16 28 H 0.09 1.03 7.35 -51.93 -0.38 0.65 16 29 H 0.12 0.76 7.98 -52.49 -0.42 0.34 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.35 8.06 -51.93 -0.42 -0.06 16 32 H 0.06 0.37 6.48 -51.93 -0.34 0.03 16 33 H 0.40 3.93 6.84 -40.82 -0.28 3.65 16 34 H 0.13 2.37 6.26 -52.49 -0.33 2.04 16 35 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 37 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -32.65 331.37 -8.31 -40.96 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.84 Total: 2.97 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.57 Total: -21.66 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.72 Total: -35.71 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.06 Total: -8.44 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.65 -8.31 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928406796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.786 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds