Wall clock time and date at job start Mon Mar 30 2020 01:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47264 * 2 1 4 4 C 1.33017 * 119.99957 * 184.87372 * 3 2 1 5 5 C 1.50705 * 120.00140 * 174.71858 * 4 3 2 6 6 C 1.47063 * 120.00151 * 354.71307 * 4 3 2 7 7 O 1.21632 * 119.99651 * 5.02245 * 6 4 3 8 8 N 1.34772 * 120.00165 * 185.02132 * 6 4 3 9 9 C 1.39837 * 119.99880 * 184.24064 * 8 6 4 10 10 C 1.38888 * 120.07208 * 324.64365 * 9 8 6 11 11 C 1.38112 * 119.92740 * 179.72289 * 10 9 8 12 12 C 1.38292 * 120.06827 * 0.55304 * 11 10 9 13 13 C 1.50698 * 119.92511 * 179.69983 * 12 11 10 14 14 C 1.50699 * 109.47127 * 270.02042 * 13 12 11 15 15 H 1.07995 * 120.00449 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99669 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99648 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00168 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47117 * 90.00147 * 18 16 14 20 20 H 1.48507 * 109.47065 * 209.99696 * 18 16 14 21 21 H 1.48498 * 109.47539 * 329.99827 * 18 16 14 22 22 C 1.38286 * 120.14582 * 359.72059 * 12 11 10 23 23 C 1.38105 * 120.07618 * 0.02562 * 22 12 11 24 24 H 1.08995 * 109.47221 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47666 * 300.00508 * 1 2 3 26 26 H 1.09005 * 109.46814 * 59.99859 * 1 2 3 27 27 H 1.08999 * 109.47666 * 239.99492 * 2 1 3 28 28 H 1.09006 * 109.47121 * 119.99424 * 2 1 3 29 29 H 1.07996 * 120.00136 * 4.86881 * 3 2 1 30 30 H 1.08999 * 109.46932 * 270.00233 * 5 4 3 31 31 H 1.09000 * 109.46867 * 29.99860 * 5 4 3 32 32 H 1.08994 * 109.47039 * 149.99563 * 5 4 3 33 33 H 0.96994 * 119.99969 * 4.51045 * 8 6 4 34 34 H 1.07997 * 120.04296 * 359.97438 * 10 9 8 35 35 H 1.07992 * 119.96611 * 180.27556 * 11 10 9 36 36 H 1.09003 * 109.47355 * 30.02429 * 13 12 11 37 37 H 1.09005 * 109.47019 * 150.02078 * 13 12 11 38 38 H 0.96998 * 119.99713 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.96282 * 180.02562 * 22 12 11 40 40 H 1.07995 * 120.03968 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 3.3362 1.6652 -0.0979 5 6 3.8300 3.0840 -0.2178 6 6 4.2959 0.5509 -0.0889 7 8 3.8946 -0.5973 -0.0842 8 7 5.6201 0.8020 -0.0859 9 6 6.5323 -0.2547 -0.1670 10 6 6.2507 -1.4661 0.4512 11 6 7.1511 -2.5097 0.3645 12 6 8.3372 -2.3457 -0.3274 13 6 9.3205 -3.4844 -0.4144 14 6 10.2789 -3.4102 0.7462 15 1 10.1852 -2.6181 1.4742 16 6 11.2749 -4.3544 0.8792 17 7 12.1110 -4.2900 1.8923 18 14 11.4367 -5.7250 -0.3796 19 1 12.3400 -5.2878 -1.4742 20 1 12.0001 -6.9336 0.2742 21 1 10.0986 -6.0435 -0.9394 22 6 8.6232 -1.1390 -0.9393 23 6 7.7247 -0.0931 -0.8608 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3338 2.2406 0.0794 30 1 3.8842 3.3621 -1.2703 31 1 3.1425 3.7529 0.2998 32 1 4.8204 3.1631 0.2304 33 1 5.9403 1.7155 -0.0236 34 1 5.3268 -1.5933 0.9958 35 1 6.9308 -3.4534 0.8412 36 1 8.7829 -4.4321 -0.3817 37 1 9.8761 -3.4141 -1.3495 38 1 12.8119 -4.9540 1.9857 39 1 9.5502 -1.0143 -1.4793 40 1 7.9488 0.8491 -1.3385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928406796.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:28 Heat of formation + Delta-G solvation = -27.326066 kcal Electronic energy + Delta-G solvation = -19937.392848 eV Core-core repulsion = 16909.045611 eV Total energy + Delta-G solvation = -3028.347237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64581 -39.77843 -36.79841 -36.09121 -35.00318 -33.41681 -32.26736 -31.79623 -28.86969 -27.78496 -25.46202 -23.98566 -23.66600 -22.77747 -21.66553 -20.35476 -18.96868 -18.47729 -17.46720 -16.80216 -16.53785 -15.95618 -15.75893 -15.57228 -14.98971 -14.86559 -14.72139 -14.35044 -14.31988 -14.04007 -13.78163 -13.66213 -13.49080 -13.26652 -13.20802 -12.60076 -12.52051 -12.19943 -12.06723 -12.00354 -11.90913 -11.75988 -11.59348 -11.02541 -10.78789 -10.54118 -9.97835 -9.77920 -8.84205 -8.29992 -6.34926 0.20609 0.54741 0.65172 1.36215 1.38549 1.50630 2.12157 2.18764 2.35494 2.95968 3.04189 3.67070 3.85048 4.04095 4.13126 4.27202 4.30465 4.39729 4.41747 4.58523 4.61443 4.63069 4.70682 4.79735 4.86403 5.03607 5.06866 5.10315 5.20073 5.22056 5.25743 5.33490 5.39225 5.42005 5.45799 5.55449 5.62798 5.68689 5.98751 6.15139 6.28847 6.49473 6.71157 7.16708 7.28447 8.86555 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033554 B = 0.003338 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.265210 B = 8387.145382 C = 8849.873015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.052 4.052 4 C -0.206 4.206 5 C -0.110 4.110 6 C 0.536 3.464 7 O -0.557 6.557 8 N -0.656 5.656 9 C 0.118 3.882 10 C -0.127 4.127 11 C -0.121 4.121 12 C -0.073 4.073 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.028 0.972 16 C 0.007 3.993 17 N -0.949 5.949 18 Si 0.951 3.049 19 H -0.261 1.261 20 H -0.283 1.283 21 H -0.249 1.249 22 C -0.113 4.113 23 C -0.131 4.131 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.162 0.838 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.423 0.577 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.026 0.974 37 H 0.034 0.966 38 H 0.268 0.732 39 H 0.132 0.868 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.924 16.677 -7.206 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.136 4.136 3 C -0.071 4.071 4 C -0.209 4.209 5 C -0.167 4.167 6 C 0.328 3.672 7 O -0.437 6.437 8 N -0.303 5.303 9 C 0.024 3.976 10 C -0.147 4.147 11 C -0.140 4.140 12 C -0.074 4.074 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.047 0.953 16 C -0.190 4.190 17 N -0.590 5.590 18 Si 0.774 3.226 19 H -0.186 1.186 20 H -0.209 1.209 21 H -0.173 1.173 22 C -0.131 4.131 23 C -0.151 4.151 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.179 0.821 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.263 0.737 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.099 15.853 -7.135 27.339 hybrid contribution 0.866 -0.694 0.168 1.123 sum -20.233 15.159 -6.967 26.224 Atomic orbital electron populations 1.21858 0.94043 1.02122 1.02693 1.20766 0.96407 0.94251 1.02194 1.24035 0.94761 0.98972 0.89358 1.21529 0.93704 0.95488 1.10160 1.20832 1.02334 0.89917 1.03604 1.19252 0.82524 0.89857 0.75525 1.90795 1.78816 1.24157 1.49883 1.43306 1.04927 1.09440 1.72590 1.17673 0.91460 0.89353 0.99071 1.21135 0.99762 0.93346 1.00446 1.20987 0.94019 0.99267 0.99699 1.20183 0.94303 0.96600 0.96300 1.18646 0.93248 0.93333 0.96358 1.21166 1.13128 1.12015 1.09364 0.95339 1.25985 0.94781 1.00488 0.97707 1.70059 1.19002 1.37505 1.32418 0.85645 0.79761 0.78146 0.79065 1.18613 1.20874 1.17265 1.21037 0.99618 0.92223 1.00230 1.21077 0.93523 1.00448 1.00069 0.92951 0.91503 0.91553 0.91743 0.91846 0.82054 0.89897 0.89048 0.91211 0.73668 0.85671 0.86852 0.95569 0.94786 0.92341 0.85001 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.85 71.98 0.71 -1.34 16 2 C -0.10 -1.95 4.51 29.85 0.13 -1.82 16 3 C -0.05 -0.78 9.25 24.52 0.23 -0.55 16 4 C -0.21 -3.46 6.00 -18.71 -0.11 -3.57 16 5 C -0.11 -0.98 9.75 71.24 0.69 -0.29 16 6 C 0.54 13.74 7.55 86.56 0.65 14.39 16 7 O -0.56 -18.46 10.56 -4.13 -0.04 -18.51 16 8 N -0.66 -15.76 5.28 -306.78 -1.62 -17.38 16 9 C 0.12 3.79 6.29 38.18 0.24 4.03 16 10 C -0.13 -4.80 8.69 22.40 0.19 -4.61 16 11 C -0.12 -5.11 9.69 22.25 0.22 -4.89 16 12 C -0.07 -3.22 5.07 -19.84 -0.10 -3.32 16 13 C 0.02 1.05 4.17 29.10 0.12 1.17 16 14 C -0.52 -30.76 9.65 25.60 0.25 -30.52 16 15 H 0.03 1.88 7.98 -2.91 -0.02 1.86 16 16 C 0.01 0.43 5.47 84.66 0.46 0.90 16 17 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 18 Si 0.95 44.70 27.47 68.60 1.88 46.58 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 22 C -0.11 -4.21 9.69 22.25 0.22 -3.99 16 23 C -0.13 -4.01 9.97 22.40 0.22 -3.78 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.06 1.60 7.10 -2.39 -0.02 1.58 16 28 H 0.06 1.55 7.35 -2.38 -0.02 1.53 16 29 H 0.16 1.23 7.98 -2.91 -0.02 1.21 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.48 8.06 -2.39 -0.02 0.46 16 32 H 0.07 0.53 6.48 -2.39 -0.02 0.52 16 33 H 0.42 6.89 6.84 -92.71 -0.63 6.25 16 34 H 0.13 4.79 6.26 -2.91 -0.02 4.77 16 35 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 36 H 0.03 1.28 7.14 -2.39 -0.02 1.26 16 37 H 0.03 1.58 7.51 -2.38 -0.02 1.56 16 38 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 40 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -74.62 331.37 4.99 -69.63 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.34 Total: 17.88 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 4.13 Total: -38.19 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -1.32 Total: -77.39 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.04 Total: -18.51 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -74.62 4.99 -69.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928406796.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.303 kcal (2) G-P(sol) polarization free energy of solvation -74.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds