Wall clock time and date at job start Mon Mar 30 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99622 * 2 1 4 4 H 1.09003 * 109.47233 * 359.97438 * 3 2 1 5 5 C 1.53004 * 109.47008 * 240.00042 * 3 2 1 6 6 C 1.53000 * 109.47185 * 65.00135 * 5 3 2 7 7 C 1.52996 * 109.47455 * 120.00022 * 3 2 1 8 8 C 1.50698 * 109.47033 * 295.00099 * 7 3 2 9 9 O 1.21278 * 120.00220 * 359.97438 * 8 7 3 10 10 N 1.34777 * 120.00052 * 179.97438 * 8 7 3 11 11 C 1.39237 * 120.00304 * 184.30077 * 10 8 7 12 12 C 1.39483 * 119.83583 * 324.48964 * 11 10 8 13 13 C 1.36377 * 120.17104 * 179.71523 * 12 11 10 14 14 C 1.40865 * 119.82627 * 0.54901 * 13 12 11 15 15 C 1.41150 * 120.16357 * 179.69798 * 14 13 12 16 16 H 1.07998 * 120.00109 * 214.80743 * 15 14 13 17 17 C 1.39908 * 119.99889 * 34.80501 * 15 14 13 18 18 N 1.30868 * 119.99775 * 355.56393 * 17 15 14 19 19 Si 1.86801 * 120.00115 * 175.56620 * 17 15 14 20 20 H 1.48504 * 109.47311 * 59.99924 * 19 17 15 21 21 H 1.48495 * 109.47361 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46954 * 300.00009 * 19 17 15 23 23 C 1.40869 * 119.67452 * 359.72694 * 14 13 12 24 24 C 1.36373 * 119.82424 * 359.97438 * 23 14 13 25 25 H 1.08002 * 119.99828 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00570 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00570 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46865 * 184.99690 * 5 3 2 29 29 H 1.08995 * 109.47151 * 304.99647 * 5 3 2 30 30 H 1.08996 * 109.47045 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.46729 * 300.00265 * 6 5 3 32 32 H 1.09006 * 109.47032 * 59.99587 * 6 5 3 33 33 H 1.08998 * 109.47620 * 174.99601 * 7 3 2 34 34 H 1.09008 * 109.46926 * 54.99977 * 7 3 2 35 35 H 0.96997 * 120.00292 * 4.31000 * 10 8 7 36 36 H 1.08005 * 119.90830 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.08129 * 180.27249 * 13 12 11 38 38 H 0.97004 * 120.00125 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.08861 * 179.97438 * 23 14 13 40 40 H 1.08002 * 119.91049 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1336 -0.0005 5 6 2.9430 1.3862 -1.2493 6 6 2.0563 1.4308 -2.4954 7 6 2.9430 1.3863 1.2492 8 6 2.0697 1.4302 2.4765 9 8 0.8626 1.4000 2.3633 10 7 2.6301 1.5029 3.7001 11 6 1.8281 1.4531 4.8372 12 6 0.5659 2.0465 4.8228 13 6 -0.2276 1.9968 5.9308 14 6 0.2352 1.3540 7.0957 15 6 -0.5776 1.3039 8.2486 16 1 -0.1277 1.3551 9.2291 17 6 -1.9660 1.1880 8.1212 18 7 -2.5186 1.2134 6.9351 19 14 -3.0311 0.9970 9.6439 20 1 -2.8492 2.1774 10.5265 21 1 -4.4567 0.8944 9.2412 22 1 -2.6339 -0.2333 10.3746 23 6 1.5135 0.7621 7.1046 24 6 2.2930 0.8147 5.9869 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5401 0.9352 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 3.5538 2.2880 -1.2056 29 1 3.5905 0.5107 -1.2952 30 1 2.6830 1.4890 -3.3853 31 1 1.4455 0.5291 -2.5389 32 1 1.4088 2.3064 -2.4494 33 1 3.5539 2.2880 1.2055 34 1 3.5906 0.5107 1.2951 35 1 3.5920 1.5901 3.7886 36 1 0.2144 2.5430 3.9303 37 1 -1.2065 2.4529 5.9165 38 1 -3.4812 1.1326 6.8467 39 1 1.8752 0.2680 7.9942 40 1 3.2734 0.3617 5.9923 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929401706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:47 Heat of formation + Delta-G solvation = -29.338209 kcal Electronic energy + Delta-G solvation = -20311.246584 eV Core-core repulsion = 17282.812093 eV Total energy + Delta-G solvation = -3028.434490 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21051 -39.24992 -37.60555 -36.03255 -34.64512 -32.59892 -31.79533 -31.30998 -30.36942 -27.06415 -25.35086 -23.22398 -22.72042 -22.41610 -21.04392 -20.39385 -19.21967 -18.37053 -17.60430 -17.01267 -16.45864 -15.82283 -15.73537 -15.55952 -14.99372 -14.85820 -14.54820 -14.38412 -14.00084 -13.93261 -13.59883 -13.29639 -12.99051 -12.90043 -12.77616 -12.64443 -12.30100 -12.12635 -12.01815 -11.74377 -11.70410 -11.63834 -11.33887 -11.15546 -10.66809 -10.46913 -9.95328 -9.43060 -8.70733 -8.48678 -6.31824 0.85646 1.14128 1.37759 1.47052 1.50935 1.55626 1.93531 2.23385 2.46750 2.83487 3.69795 3.85815 3.90849 3.93957 4.37685 4.42112 4.45280 4.48722 4.51572 4.62572 4.70068 4.84808 5.00670 5.03988 5.08719 5.10622 5.14236 5.20467 5.22626 5.35989 5.42746 5.47482 5.49709 5.72598 5.83563 5.90633 6.06832 6.11071 6.17720 6.38004 6.72391 6.83556 6.97031 7.04463 7.55451 8.43904 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031017 B = 0.003758 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.508334 B = 7449.493082 C = 8090.021805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.145 4.145 3 C -0.045 4.045 4 H 0.055 0.945 5 C -0.107 4.107 6 C -0.153 4.153 7 C -0.119 4.119 8 C 0.488 3.512 9 O -0.565 6.565 10 N -0.651 5.651 11 C 0.026 3.974 12 C -0.109 4.109 13 C -0.168 4.168 14 C 0.063 3.937 15 C -0.499 4.499 16 H 0.079 0.921 17 C 0.022 3.978 18 N -0.848 5.848 19 Si 0.990 3.010 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.259 1.259 23 C -0.211 4.211 24 C -0.111 4.111 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.418 0.582 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.281 0.719 39 H 0.111 0.889 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.458 -0.521 -12.995 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.163 4.163 3 C -0.064 4.064 4 H 0.074 0.926 5 C -0.144 4.144 6 C -0.211 4.211 7 C -0.159 4.159 8 C 0.277 3.723 9 O -0.443 6.443 10 N -0.297 5.297 11 C -0.068 4.068 12 C -0.130 4.130 13 C -0.189 4.189 14 C 0.061 3.939 15 C -0.530 4.530 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.476 5.476 19 Si 0.811 3.189 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.184 1.184 23 C -0.231 4.231 24 C -0.131 4.131 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.133 0.867 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.255 0.745 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.406 -0.559 -13.242 17.486 hybrid contribution -0.846 -0.064 0.810 1.173 sum 10.560 -0.623 -12.433 16.324 Atomic orbital electron populations 1.23663 0.96897 1.00589 1.01345 1.22884 0.95611 0.98394 0.99379 1.20176 0.96649 0.95357 0.94216 0.92603 1.21501 0.97400 1.03430 0.92095 1.21776 0.99956 1.01328 0.97991 1.21743 0.97893 1.06892 0.89325 1.21719 0.89523 0.75468 0.85580 1.90725 1.17150 1.49634 1.86766 1.43026 1.10468 1.72439 1.03782 1.17378 0.93778 1.07117 0.88513 1.20659 0.94930 1.00190 0.97173 1.21166 0.99978 1.03185 0.94535 1.18042 0.92393 0.89707 0.93737 1.19734 0.92160 1.47029 0.94086 0.90312 1.26845 0.99710 0.91990 1.00392 1.69913 1.12929 1.39006 1.25783 0.85130 0.76404 0.80001 0.77353 1.18137 1.19817 1.18378 1.20962 0.96910 1.06317 0.98874 1.20452 1.00252 0.99865 0.92546 0.89200 0.90539 0.86674 0.90119 0.90267 0.91393 0.93417 0.93718 0.85738 0.86143 0.74483 0.88579 0.87962 0.90852 0.87101 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.64 13.22 67.78 0.90 -4.74 16 2 C -0.14 -3.67 6.76 25.65 0.17 -3.49 16 3 C -0.04 -0.97 1.82 -11.54 -0.02 -0.99 16 4 H 0.06 1.50 7.60 -2.39 -0.02 1.48 16 5 C -0.11 -1.54 5.39 30.60 0.16 -1.38 16 6 C -0.15 -2.40 9.73 71.98 0.70 -1.70 16 7 C -0.12 -2.30 5.17 29.85 0.15 -2.15 16 8 C 0.49 15.77 7.41 87.66 0.65 16.42 16 9 O -0.56 -24.32 11.60 -3.02 -0.04 -24.35 16 10 N -0.65 -20.89 5.30 -303.12 -1.61 -22.50 16 11 C 0.03 1.13 6.30 38.57 0.24 1.37 16 12 C -0.11 -5.68 8.61 22.14 0.19 -5.49 16 13 C -0.17 -9.67 8.62 22.48 0.19 -9.48 16 14 C 0.06 3.57 5.55 -21.28 -0.12 3.45 16 15 C -0.50 -27.94 9.02 23.39 0.21 -27.73 16 16 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 17 C 0.02 1.16 5.42 85.24 0.46 1.62 16 18 N -0.85 -48.28 10.60 21.82 0.23 -48.05 16 19 Si 0.99 40.56 29.56 68.60 2.03 42.59 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 C -0.21 -10.24 9.74 22.48 0.22 -10.02 16 24 C -0.11 -4.67 9.90 22.13 0.22 -4.45 16 25 H 0.09 2.56 8.06 -2.91 -0.02 2.54 16 26 H 0.08 2.54 7.83 -2.91 -0.02 2.51 16 27 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.84 7.38 -2.39 -0.02 0.82 16 32 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.42 9.31 8.82 -92.71 -0.82 8.49 16 36 H 0.10 5.11 6.24 -2.91 -0.02 5.09 16 37 H 0.10 6.31 6.13 -2.91 -0.02 6.30 16 38 H 0.28 14.74 8.30 -92.71 -0.77 13.97 16 39 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -71.37 332.26 5.16 -66.21 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.21 Total: 34.84 kcal Atomic # 6 Polarization: -53.07 SS G_CDS: 4.34 Total: -48.74 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.38 Total: -70.55 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.04 Total: -24.35 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -71.37 5.16 -66.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929401706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.871 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds