Wall clock time and date at job start Mon Mar 30 2020 02:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99463 * 2 1 4 4 H 1.08995 * 109.47397 * 0.02562 * 3 2 1 5 5 C 1.53003 * 109.46759 * 120.00264 * 3 2 1 6 6 C 1.53006 * 109.46923 * 294.99459 * 5 3 2 7 7 C 1.53001 * 109.47319 * 239.99423 * 3 2 1 8 8 C 1.50705 * 109.46649 * 65.00313 * 7 3 2 9 9 O 1.21286 * 119.99817 * 0.02562 * 8 7 3 10 10 N 1.34778 * 120.00113 * 179.97438 * 8 7 3 11 11 C 1.39235 * 120.00073 * 175.70812 * 10 8 7 12 12 C 1.39476 * 119.83483 * 215.02061 * 11 10 8 13 13 C 1.36378 * 120.17307 * 179.72198 * 12 11 10 14 14 C 1.40873 * 119.82270 * 0.57032 * 13 12 11 15 15 C 1.41145 * 120.16212 * 179.67803 * 14 13 12 16 16 H 1.08001 * 119.99981 * 214.80160 * 15 14 13 17 17 C 1.39905 * 120.00386 * 34.80841 * 15 14 13 18 18 N 1.30875 * 119.99256 * 355.55157 * 17 15 14 19 19 Si 1.86797 * 120.00261 * 175.55873 * 17 15 14 20 20 H 1.48502 * 109.47034 * 89.99898 * 19 17 15 21 21 H 1.48497 * 109.46859 * 209.99696 * 19 17 15 22 22 H 1.48494 * 109.46927 * 329.99612 * 19 17 15 23 23 C 1.40873 * 119.67026 * 359.70402 * 14 13 12 24 24 C 1.36371 * 119.83261 * 359.97438 * 23 14 13 25 25 H 1.07996 * 119.99568 * 179.97438 * 1 2 3 26 26 H 1.07993 * 120.00380 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00106 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47071 * 175.00000 * 5 3 2 29 29 H 1.08996 * 109.47790 * 54.99514 * 5 3 2 30 30 H 1.08996 * 109.47194 * 300.00096 * 6 5 3 31 31 H 1.09001 * 109.46974 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.46805 * 60.00378 * 6 5 3 33 33 H 1.09000 * 109.47180 * 184.99896 * 7 3 2 34 34 H 1.08999 * 109.47371 * 305.01034 * 7 3 2 35 35 H 0.97000 * 119.99468 * 355.71390 * 10 8 7 36 36 H 1.08004 * 119.91253 * 0.02562 * 12 11 10 37 37 H 1.07993 * 120.08742 * 180.25363 * 13 12 11 38 38 H 0.97008 * 119.99402 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.08025 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.91812 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3862 1.2493 6 6 2.0563 1.4307 2.4954 7 6 2.9432 1.3863 -1.2492 8 6 2.0698 1.4301 -2.4766 9 8 0.8626 1.4000 -2.3632 10 7 2.6301 1.5039 -3.7001 11 6 1.8282 1.4543 -4.8372 12 6 2.2955 0.8211 -5.9888 13 6 1.5135 0.7635 -7.1047 14 6 0.2356 1.3562 -7.0959 15 6 -0.5770 1.3067 -8.2490 16 1 -1.2246 2.1369 -8.4892 17 6 -0.5435 0.1823 -9.0808 18 7 0.3035 -0.7856 -8.8386 19 14 -1.7075 0.0625 -10.5368 20 1 -1.0648 0.6598 -11.7348 21 1 -2.0217 -1.3642 -10.8032 22 1 -2.9613 0.7965 -10.2298 23 6 -0.2271 1.9989 -5.9309 24 6 0.5636 2.0426 -4.8207 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 3.5539 2.2879 1.2057 29 1 3.5905 0.5106 1.2953 30 1 1.4089 2.3064 2.4495 31 1 2.6830 1.4889 3.3853 32 1 1.4455 0.5291 2.5390 33 1 3.5539 2.2880 -1.2055 34 1 3.5906 0.5106 -1.2951 35 1 3.5921 1.5914 -3.7884 36 1 3.2772 0.3709 -5.9952 37 1 1.8751 0.2693 -7.9942 38 1 0.3270 -1.5651 -9.4156 39 1 -1.2056 2.4558 -5.9170 40 1 0.2101 2.5346 -3.9266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929401708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:50 Heat of formation + Delta-G solvation = -29.253530 kcal Electronic energy + Delta-G solvation = -20234.183981 eV Core-core repulsion = 17205.753163 eV Total energy + Delta-G solvation = -3028.430818 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21830 -39.25887 -37.60704 -36.01843 -34.66859 -32.59208 -31.73163 -31.41711 -30.32908 -27.06973 -25.34902 -23.33032 -22.61705 -22.38831 -21.09677 -20.38831 -19.26538 -18.27907 -17.67210 -17.00262 -16.50358 -15.84490 -15.72331 -15.52700 -15.00642 -14.83380 -14.56883 -14.37410 -14.05672 -13.89791 -13.57539 -13.23060 -12.99404 -12.96024 -12.81945 -12.65224 -12.47292 -12.12423 -12.01394 -11.78015 -11.63976 -11.38813 -11.33322 -11.17495 -10.70767 -10.56038 -9.95760 -9.45592 -8.69633 -8.50014 -6.32672 0.82609 1.14351 1.38568 1.45278 1.52944 1.56479 1.92592 2.23697 2.45967 2.81482 3.67504 3.86299 3.90461 3.94430 4.37412 4.39796 4.44073 4.49475 4.55197 4.63533 4.70479 4.85097 4.95107 5.03601 5.08854 5.10699 5.15609 5.18041 5.21357 5.37281 5.43036 5.47084 5.50094 5.70350 5.84904 5.93448 6.04843 6.07319 6.16254 6.40621 6.68420 6.83106 6.97051 7.01539 7.52749 8.42489 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.038741 B = 0.003448 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.570573 B = 8118.845801 C = 8373.166003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C -0.044 4.044 4 H 0.059 0.941 5 C -0.108 4.108 6 C -0.153 4.153 7 C -0.121 4.121 8 C 0.490 3.510 9 O -0.564 6.564 10 N -0.652 5.652 11 C 0.027 3.973 12 C -0.123 4.123 13 C -0.159 4.159 14 C 0.065 3.935 15 C -0.500 4.500 16 H 0.071 0.929 17 C 0.027 3.973 18 N -0.843 5.843 19 Si 0.988 3.012 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.264 1.264 23 C -0.222 4.222 24 C -0.098 4.098 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.417 0.583 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.284 0.716 39 H 0.092 0.908 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.167 1.694 15.185 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.165 4.165 3 C -0.063 4.063 4 H 0.077 0.923 5 C -0.145 4.145 6 C -0.210 4.210 7 C -0.160 4.160 8 C 0.279 3.721 9 O -0.442 6.442 10 N -0.297 5.297 11 C -0.067 4.067 12 C -0.143 4.143 13 C -0.179 4.179 14 C 0.063 3.937 15 C -0.531 4.531 16 H 0.089 0.911 17 C -0.184 4.184 18 N -0.471 5.471 19 Si 0.809 3.191 20 H -0.183 1.183 21 H -0.194 1.194 22 H -0.188 1.188 23 C -0.242 4.242 24 C -0.118 4.118 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.254 0.746 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.413 1.440 15.229 17.458 hybrid contribution -0.596 -0.214 -0.973 1.161 sum 7.817 1.226 14.256 16.305 Atomic orbital electron populations 1.23675 0.96781 1.00713 1.01169 1.22883 0.95736 0.98321 0.99540 1.20165 0.96628 0.95436 0.94027 0.92273 1.21506 0.97446 1.03347 0.92229 1.21772 0.99943 1.01387 0.97900 1.21752 0.97973 1.06799 0.89474 1.21677 0.89543 0.75413 0.85428 1.90690 1.16951 1.49771 1.86763 1.43056 1.10510 1.72312 1.03842 1.17350 0.94242 1.06769 0.88361 1.20583 1.00285 1.00190 0.93206 1.21177 0.93956 1.04194 0.98589 1.18018 0.92035 0.91116 0.92529 1.19706 1.22467 1.03418 1.07492 0.91117 1.26733 0.97000 0.94263 1.00452 1.69834 1.32744 1.07512 1.36969 0.85109 0.78426 0.78372 0.77180 1.18323 1.19374 1.18784 1.20930 0.99667 1.09672 0.93912 1.20508 0.94676 0.99551 0.97083 0.89194 0.90194 0.86960 0.90139 0.90477 0.93552 0.91497 0.93402 0.85736 0.86429 0.74613 0.85795 0.86417 0.90527 0.88936 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.28 13.22 67.78 0.90 -4.38 16 2 C -0.15 -3.59 6.76 25.64 0.17 -3.41 16 3 C -0.04 -0.90 1.82 -11.54 -0.02 -0.92 16 4 H 0.06 1.49 7.60 -2.39 -0.02 1.47 16 5 C -0.11 -1.50 5.39 30.60 0.16 -1.34 16 6 C -0.15 -2.28 9.73 71.98 0.70 -1.58 16 7 C -0.12 -2.28 5.17 29.85 0.15 -2.13 16 8 C 0.49 15.41 7.41 87.66 0.65 16.06 16 9 O -0.56 -23.03 11.59 -3.05 -0.04 -23.07 16 10 N -0.65 -20.97 5.30 -303.10 -1.61 -22.58 16 11 C 0.03 1.16 6.31 38.56 0.24 1.40 16 12 C -0.12 -5.55 9.90 22.13 0.22 -5.33 16 13 C -0.16 -8.45 8.62 22.48 0.19 -8.26 16 14 C 0.07 3.69 5.55 -21.28 -0.12 3.57 16 15 C -0.50 -28.13 9.02 23.39 0.21 -27.92 16 16 H 0.07 3.86 7.85 -2.91 -0.02 3.83 16 17 C 0.03 1.42 5.42 85.24 0.46 1.88 16 18 N -0.84 -45.26 10.60 21.82 0.23 -45.03 16 19 Si 0.99 39.92 29.56 68.60 2.03 41.95 16 20 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 21 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 C -0.22 -11.86 9.74 22.48 0.22 -11.64 16 24 C -0.10 -4.81 8.61 22.13 0.19 -4.62 16 25 H 0.09 2.42 8.06 -2.91 -0.02 2.40 16 26 H 0.08 2.46 7.83 -2.91 -0.02 2.44 16 27 H 0.11 2.43 8.06 -2.91 -0.02 2.40 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.80 7.38 -2.39 -0.02 0.79 16 33 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.42 9.66 8.82 -92.71 -0.82 8.84 16 36 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.12 6.50 6.13 -2.91 -0.02 6.49 16 38 H 0.28 13.85 8.30 -92.70 -0.77 13.08 16 39 H 0.09 4.80 8.06 -2.91 -0.02 4.77 16 40 H 0.11 5.23 6.22 -2.91 -0.02 5.21 16 Total: -1.00 -68.36 332.23 5.16 -63.20 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.21 Total: 34.15 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 4.34 Total: -48.61 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -1.38 Total: -67.61 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.04 Total: -23.07 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -68.36 5.16 -63.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929401708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.943 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds