Wall clock time and date at job start Mon Mar 30 2020 02:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46896 * 109.47501 * 331.52747 * 3 2 1 5 5 C 1.46900 * 111.00057 * 170.00160 * 4 3 2 6 6 C 1.50701 * 109.47233 * 287.91982 * 5 4 3 7 7 C 1.38299 * 119.93314 * 275.74729 * 6 5 4 8 8 C 1.38099 * 120.07017 * 179.72243 * 7 6 5 9 9 C 1.38880 * 119.92900 * 0.57009 * 8 7 6 10 10 O 1.35755 * 120.06832 * 179.68823 * 9 8 7 11 11 C 1.34835 * 116.99528 * 185.44347 * 10 9 8 12 12 H 1.07995 * 120.00110 * 4.60184 * 11 10 9 13 13 C 1.38656 * 119.99495 * 184.60797 * 11 10 9 14 14 N 1.31555 * 120.00090 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99728 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47094 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47305 * 119.99794 * 15 13 11 18 18 H 1.48508 * 109.46568 * 239.99814 * 15 13 11 19 19 C 1.38874 * 119.86228 * 359.69593 * 9 8 7 20 20 C 1.38097 * 119.92902 * 0.02562 * 19 9 8 21 21 C 1.46899 * 111.00091 * 293.95787 * 4 3 2 22 22 C 1.53005 * 109.47078 * 170.89780 * 21 4 3 23 23 C 1.53004 * 109.46861 * 290.89161 * 21 4 3 24 24 H 4.40886 * 5.52239 * 179.97438 * 4 1 2 25 25 H 1.09009 * 109.47022 * 211.52832 * 3 2 1 26 26 H 1.09003 * 109.47381 * 91.53326 * 3 2 1 27 27 H 1.08991 * 109.47528 * 47.92354 * 5 4 3 28 28 H 1.09008 * 109.47260 * 167.92571 * 5 4 3 29 29 H 1.08000 * 119.96473 * 359.97209 * 7 6 5 30 30 H 1.08002 * 120.03924 * 180.26510 * 8 7 6 31 31 H 0.97004 * 120.00028 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.03423 * 179.97438 * 19 9 8 33 33 H 1.08006 * 119.96445 * 179.97438 * 20 19 9 34 34 H 1.08998 * 109.47427 * 50.89039 * 21 4 3 35 35 H 1.08996 * 109.47158 * 66.32388 * 22 21 4 36 36 H 1.08997 * 109.46792 * 186.32583 * 22 21 4 37 37 H 1.09000 * 109.47086 * 306.32124 * 22 21 4 38 38 H 1.09000 * 109.46890 * 60.00004 * 23 21 4 39 39 H 1.08999 * 109.46942 * 179.97438 * 23 21 4 40 40 H 1.09003 * 109.47422 * 300.00345 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.2165 0.6602 5 6 4.5852 -1.3699 0.4729 6 6 4.8689 -1.7554 -0.9561 7 6 4.7973 -3.0821 -1.3401 8 6 5.0512 -3.4379 -2.6501 9 6 5.3902 -2.4633 -3.5796 10 8 5.6466 -2.8106 -4.8667 11 6 6.0789 -1.8341 -5.6897 12 1 6.2778 -0.8472 -5.2989 13 6 6.2680 -2.0970 -7.0379 14 7 6.0261 -3.2993 -7.5139 15 14 6.8677 -0.7442 -8.1781 16 1 7.0650 0.5062 -7.4017 17 1 8.1550 -1.1521 -8.7960 18 1 5.8592 -0.5113 -9.2430 19 6 5.4667 -1.1326 -3.1896 20 6 5.2060 -0.7825 -1.8794 21 6 2.7867 -1.2187 2.0870 22 6 3.1082 -2.5883 2.6888 23 6 3.5954 -0.1408 2.8118 24 1 -1.0499 -0.0003 0.0004 25 1 3.0089 0.8769 0.5374 26 1 3.0093 0.0283 -1.0273 27 1 5.0828 -0.4273 0.7005 28 1 4.9575 -2.1476 1.1398 29 1 4.5387 -3.8402 -0.6157 30 1 4.9910 -4.4736 -2.9505 31 1 6.1581 -3.4831 -8.4572 32 1 5.7305 -0.3724 -3.9100 33 1 5.2657 0.2521 -1.5754 34 1 1.7225 -1.0125 2.2008 35 1 4.1865 -2.7463 2.6768 36 1 2.7465 -2.6276 3.7162 37 1 2.6203 -3.3665 2.1019 38 1 3.3665 0.8348 2.3831 39 1 3.3357 -0.1421 3.8704 40 1 4.6597 -0.3470 2.6981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932390571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:38 Heat of formation + Delta-G solvation = 56.171729 kcal Electronic energy + Delta-G solvation = -20371.586280 eV Core-core repulsion = 17346.859779 eV Total energy + Delta-G solvation = -3024.726501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.43952 -38.47095 -36.32786 -33.47462 -32.45065 -31.70819 -30.13283 -29.56095 -27.38613 -26.48420 -25.38780 -23.97227 -21.91865 -20.85376 -19.67051 -18.03998 -17.86550 -16.93956 -16.11462 -15.51336 -15.09263 -14.54480 -14.43112 -14.14119 -13.94539 -13.54724 -13.41429 -13.19410 -12.76037 -12.66371 -12.57594 -12.32431 -11.89130 -11.78795 -11.53746 -11.30241 -11.22466 -10.99942 -10.67889 -10.63168 -10.56387 -10.39727 -10.26403 -10.03332 -9.32912 -8.81739 -8.26072 -8.11731 -7.14610 -6.43699 -4.02229 2.24899 2.29320 2.80887 2.92763 3.13030 3.14320 3.19879 3.97760 4.09937 4.43759 4.65194 4.81571 4.94857 5.12558 5.17991 5.23467 5.30415 5.36703 5.46550 5.49414 5.51946 5.69329 5.72890 5.77521 5.81933 5.87283 5.97875 6.02868 6.10152 6.18673 6.25790 6.45603 6.74268 6.92419 7.01258 7.10635 7.17350 7.30649 7.43282 7.47243 7.69216 7.86588 8.01507 9.02186 9.73206 10.74545 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026533 B = 0.003820 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.019911 B = 7327.601417 C = 7680.181541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.166 4.166 3 C 0.154 3.846 4 N -0.522 5.522 5 C 0.110 3.890 6 C -0.180 4.180 7 C -0.050 4.050 8 C -0.194 4.194 9 C 0.155 3.845 10 O -0.179 6.179 11 C -0.391 4.391 12 H 0.092 0.908 13 C 0.039 3.961 14 N -0.863 5.863 15 Si 0.940 3.060 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.234 4.234 20 C -0.069 4.069 21 C 0.073 3.927 22 C -0.143 4.143 23 C -0.188 4.188 24 H 0.215 0.785 25 H 0.056 0.944 26 H 0.106 0.894 27 H 0.037 0.963 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.269 0.731 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 5.991 17.346 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.166 4.166 3 C 0.028 3.972 4 N -0.245 5.245 5 C -0.016 4.016 6 C -0.181 4.181 7 C -0.069 4.069 8 C -0.213 4.213 9 C 0.102 3.898 10 O -0.082 6.082 11 C -0.467 4.467 12 H 0.109 0.891 13 C -0.165 4.165 14 N -0.498 5.498 15 Si 0.765 3.235 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.202 1.202 19 C -0.253 4.253 20 C -0.088 4.088 21 C -0.035 4.035 22 C -0.201 4.201 23 C -0.246 4.246 24 H 0.231 0.769 25 H 0.073 0.927 26 H 0.124 0.876 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.332 5.247 16.778 18.370 hybrid contribution 0.415 1.471 -0.305 1.559 sum -4.917 6.718 16.473 18.457 Atomic orbital electron populations 1.24793 0.95809 1.00840 1.01781 1.22940 0.94231 0.99838 0.99614 1.19124 0.84904 0.91686 1.01512 1.62257 1.14761 1.36298 1.11213 1.20873 0.86184 0.99816 0.94750 1.19091 1.10683 0.93753 0.94560 1.20426 0.96888 0.95078 0.94486 1.20218 1.10244 0.98431 0.92443 1.19408 0.91977 0.92384 0.86071 1.83993 1.72415 1.37070 1.14731 1.21364 1.44255 0.92082 0.89015 0.89078 1.25283 0.97109 0.97739 0.96414 1.70049 1.45222 1.19812 1.14682 0.85660 0.78486 0.79638 0.79714 1.19126 1.20147 1.20157 1.21114 1.10996 0.96448 0.96746 1.20599 0.97930 0.97416 0.92817 1.21744 0.99692 0.95139 0.86969 1.21852 1.01792 0.96584 0.99867 1.22500 1.01287 0.99776 1.01069 0.76857 0.92667 0.87635 0.94486 0.90156 0.87125 0.86634 0.92094 0.85680 0.87940 0.90176 0.92486 0.92570 0.91581 0.92694 0.92225 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.57 19.25 29.55 0.57 -2.00 16 2 C -0.17 -2.25 12.32 -37.12 -0.46 -2.71 16 3 C 0.15 2.02 5.16 -6.61 -0.03 1.99 16 4 N -0.52 -6.76 4.38 -231.57 -1.02 -7.78 16 5 C 0.11 1.44 3.87 -4.98 -0.02 1.42 16 6 C -0.18 -3.00 4.92 -104.58 -0.51 -3.52 16 7 C -0.05 -0.90 9.71 -39.61 -0.38 -1.29 16 8 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 16 9 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 10 O -0.18 -5.14 9.76 0.02 0.00 -5.14 16 11 C -0.39 -10.98 9.45 30.89 0.29 -10.69 16 12 H 0.09 2.37 5.27 -52.49 -0.28 2.10 16 13 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 14 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 15 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 C -0.23 -5.06 9.14 -39.40 -0.36 -5.42 16 20 C -0.07 -1.23 8.29 -39.61 -0.33 -1.56 16 21 C 0.07 0.78 2.80 -67.71 -0.19 0.59 16 22 C -0.14 -1.38 8.98 37.16 0.33 -1.05 16 23 C -0.19 -1.72 8.51 37.16 0.32 -1.40 16 24 H 0.21 1.78 7.80 -54.10 -0.42 1.36 16 25 H 0.06 0.63 6.36 -51.92 -0.33 0.30 16 26 H 0.11 1.55 6.18 -51.93 -0.32 1.23 16 27 H 0.04 0.45 7.04 -51.93 -0.37 0.09 16 28 H 0.08 0.98 5.98 -51.92 -0.31 0.67 16 29 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.13 2.73 5.70 -52.49 -0.30 2.43 16 33 H 0.10 1.55 8.04 -52.48 -0.42 1.13 16 34 H 0.08 0.91 7.03 -51.93 -0.37 0.54 16 35 H 0.06 0.53 6.53 -51.93 -0.34 0.19 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.51 6.54 -51.93 -0.34 0.17 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.56 6.70 -51.93 -0.35 0.21 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -30.77 331.26 -7.20 -37.97 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.39 Total: 4.74 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -1.53 Total: -25.67 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: -0.26 Total: -32.47 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: 0.00 Total: -5.14 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.77 -7.20 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932390571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.144 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds