Wall clock time and date at job start Mon Mar 30 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46896 * 109.47501 * 331.52747 * 3 2 1 5 5 C 1.46900 * 111.00057 * 170.00160 * 4 3 2 6 6 C 1.50701 * 109.47233 * 287.91982 * 5 4 3 7 7 C 1.38299 * 119.93314 * 275.74729 * 6 5 4 8 8 C 1.38099 * 120.07017 * 179.72243 * 7 6 5 9 9 C 1.38880 * 119.92900 * 0.57009 * 8 7 6 10 10 O 1.35755 * 120.06832 * 179.68823 * 9 8 7 11 11 C 1.34835 * 116.99528 * 185.44347 * 10 9 8 12 12 H 1.07995 * 120.00110 * 4.60184 * 11 10 9 13 13 C 1.38656 * 119.99495 * 184.60797 * 11 10 9 14 14 N 1.31555 * 120.00090 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99728 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47094 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47305 * 119.99794 * 15 13 11 18 18 H 1.48508 * 109.46568 * 239.99814 * 15 13 11 19 19 C 1.38874 * 119.86228 * 359.69593 * 9 8 7 20 20 C 1.38097 * 119.92902 * 0.02562 * 19 9 8 21 21 C 1.46899 * 111.00091 * 293.95787 * 4 3 2 22 22 C 1.53005 * 109.47078 * 170.89780 * 21 4 3 23 23 C 1.53004 * 109.46861 * 290.89161 * 21 4 3 24 24 H 4.40886 * 5.52239 * 179.97438 * 4 1 2 25 25 H 1.09009 * 109.47022 * 211.52832 * 3 2 1 26 26 H 1.09003 * 109.47381 * 91.53326 * 3 2 1 27 27 H 1.08991 * 109.47528 * 47.92354 * 5 4 3 28 28 H 1.09008 * 109.47260 * 167.92571 * 5 4 3 29 29 H 1.08000 * 119.96473 * 359.97209 * 7 6 5 30 30 H 1.08002 * 120.03924 * 180.26510 * 8 7 6 31 31 H 0.97004 * 120.00028 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.03423 * 179.97438 * 19 9 8 33 33 H 1.08006 * 119.96445 * 179.97438 * 20 19 9 34 34 H 1.08998 * 109.47427 * 50.89039 * 21 4 3 35 35 H 1.08996 * 109.47158 * 66.32388 * 22 21 4 36 36 H 1.08997 * 109.46792 * 186.32583 * 22 21 4 37 37 H 1.09000 * 109.47086 * 306.32124 * 22 21 4 38 38 H 1.09000 * 109.46890 * 60.00004 * 23 21 4 39 39 H 1.08999 * 109.46942 * 179.97438 * 23 21 4 40 40 H 1.09003 * 109.47422 * 300.00345 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.2165 0.6602 5 6 4.5852 -1.3699 0.4729 6 6 4.8689 -1.7554 -0.9561 7 6 4.7973 -3.0821 -1.3401 8 6 5.0512 -3.4379 -2.6501 9 6 5.3902 -2.4633 -3.5796 10 8 5.6466 -2.8106 -4.8667 11 6 6.0789 -1.8341 -5.6897 12 1 6.2778 -0.8472 -5.2989 13 6 6.2680 -2.0970 -7.0379 14 7 6.0261 -3.2993 -7.5139 15 14 6.8677 -0.7442 -8.1781 16 1 7.0650 0.5062 -7.4017 17 1 8.1550 -1.1521 -8.7960 18 1 5.8592 -0.5113 -9.2430 19 6 5.4667 -1.1326 -3.1896 20 6 5.2060 -0.7825 -1.8794 21 6 2.7867 -1.2187 2.0870 22 6 3.1082 -2.5883 2.6888 23 6 3.5954 -0.1408 2.8118 24 1 -1.0499 -0.0003 0.0004 25 1 3.0089 0.8769 0.5374 26 1 3.0093 0.0283 -1.0273 27 1 5.0828 -0.4273 0.7005 28 1 4.9575 -2.1476 1.1398 29 1 4.5387 -3.8402 -0.6157 30 1 4.9910 -4.4736 -2.9505 31 1 6.1581 -3.4831 -8.4572 32 1 5.7305 -0.3724 -3.9100 33 1 5.2657 0.2521 -1.5754 34 1 1.7225 -1.0125 2.2008 35 1 4.1865 -2.7463 2.6768 36 1 2.7465 -2.6276 3.7162 37 1 2.6203 -3.3665 2.1019 38 1 3.3665 0.8348 2.3831 39 1 3.3357 -0.1421 3.8704 40 1 4.6597 -0.3470 2.6981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932390571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:37 Heat of formation + Delta-G solvation = 37.615104 kcal Electronic energy + Delta-G solvation = -20372.390955 eV Core-core repulsion = 17346.859779 eV Total energy + Delta-G solvation = -3025.531177 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90727 -39.80673 -37.95492 -34.38526 -34.35016 -32.93980 -31.74613 -30.83429 -28.22938 -27.76514 -27.11313 -25.15610 -23.56634 -22.30202 -20.70116 -19.83106 -19.00561 -18.61256 -17.23426 -16.51102 -16.44504 -16.30151 -15.74841 -15.50685 -15.40581 -15.10893 -14.73464 -14.33018 -14.23802 -13.89092 -13.67487 -13.51695 -13.36632 -13.00710 -12.74152 -12.57953 -12.42172 -12.26983 -12.11280 -12.02953 -11.97044 -11.65473 -11.27982 -11.16115 -10.99648 -10.78080 -9.73617 -9.21267 -8.86643 -8.46502 -6.14308 0.63348 0.70348 1.34978 1.43312 1.53403 1.82104 1.95743 2.18102 2.79574 3.09291 3.37046 3.53585 3.56629 3.99727 4.05338 4.07309 4.22101 4.30805 4.34737 4.43300 4.54076 4.56308 4.65283 4.75234 4.82093 4.83226 4.91961 5.04980 5.11587 5.12975 5.15148 5.17214 5.33544 5.34585 5.44184 5.61106 5.74096 5.81948 6.04193 6.13439 6.20301 6.30300 6.74612 6.98502 7.80600 8.77306 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026533 B = 0.003820 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.019911 B = 7327.601417 C = 7680.181541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.155 3.845 4 N -0.536 5.536 5 C 0.113 3.887 6 C -0.152 4.152 7 C -0.046 4.046 8 C -0.207 4.207 9 C 0.113 3.887 10 O -0.235 6.235 11 C -0.412 4.412 12 H 0.101 0.899 13 C -0.024 4.024 14 N -0.922 5.922 15 Si 1.019 2.981 16 H -0.251 1.251 17 H -0.268 1.268 18 H -0.269 1.269 19 C -0.242 4.242 20 C -0.064 4.064 21 C 0.075 3.925 22 C -0.142 4.142 23 C -0.183 4.183 24 H 0.244 0.756 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.142 0.858 30 H 0.110 0.890 31 H 0.272 0.728 32 H 0.117 0.883 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 7.961 20.383 22.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.208 4.208 3 C 0.028 3.972 4 N -0.260 5.260 5 C -0.013 4.013 6 C -0.153 4.153 7 C -0.064 4.064 8 C -0.226 4.226 9 C 0.062 3.938 10 O -0.142 6.142 11 C -0.488 4.488 12 H 0.118 0.882 13 C -0.221 4.221 14 N -0.560 5.560 15 Si 0.838 3.162 16 H -0.174 1.174 17 H -0.193 1.193 18 H -0.194 1.194 19 C -0.261 4.261 20 C -0.082 4.082 21 C -0.033 4.033 22 C -0.199 4.199 23 C -0.241 4.241 24 H 0.261 0.739 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.160 0.840 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.758 7.231 19.887 21.930 hybrid contribution 0.376 0.861 -0.853 1.269 sum -5.382 8.091 19.033 21.371 Atomic orbital electron populations 1.25632 0.96746 0.99343 1.00153 1.23329 0.95033 1.01313 1.01144 1.19080 0.85005 0.92493 1.00581 1.62153 1.14167 1.36658 1.12983 1.20885 0.86979 1.01439 0.91986 1.19621 1.06393 0.92827 0.96442 1.20799 0.95543 0.96698 0.93403 1.20456 1.10587 0.97921 0.93624 1.19947 0.94069 0.94378 0.85372 1.83951 1.75313 1.38199 1.16688 1.21850 1.44708 0.92534 0.89724 0.88168 1.26588 0.97116 1.00538 0.97872 1.70196 1.48066 1.22516 1.15251 0.84531 0.78045 0.76532 0.77100 1.17432 1.19274 1.19404 1.21214 1.11344 0.95176 0.98403 1.20957 0.96434 0.99582 0.91245 1.21765 0.99590 0.96331 0.85629 1.21848 1.02058 0.95426 1.00566 1.22447 1.01104 0.98891 1.01693 0.73935 0.90960 0.89669 0.92518 0.88337 0.84005 0.87233 0.91882 0.86560 0.84435 0.90897 0.91913 0.90869 0.92900 0.92918 0.90845 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.35 19.25 74.32 1.43 -2.92 16 2 C -0.21 -5.23 12.32 31.13 0.38 -4.85 16 3 C 0.15 3.68 5.16 84.50 0.44 4.12 16 4 N -0.54 -12.20 4.38 -886.55 -3.89 -16.08 16 5 C 0.11 2.52 3.87 85.56 0.33 2.85 16 6 C -0.15 -4.67 4.92 -19.83 -0.10 -4.76 16 7 C -0.05 -1.58 9.71 22.25 0.22 -1.36 16 8 C -0.21 -9.05 9.99 22.39 0.22 -8.82 16 9 C 0.11 5.73 6.65 22.58 0.15 5.88 16 10 O -0.23 -14.44 9.76 -22.85 -0.22 -14.66 16 11 C -0.41 -24.39 9.45 67.92 0.64 -23.75 16 12 H 0.10 5.45 5.27 -2.91 -0.02 5.44 16 13 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 14 N -0.92 -57.44 13.67 21.61 0.30 -57.15 16 15 Si 1.02 43.40 29.55 68.60 2.03 45.42 16 16 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 C -0.24 -10.64 9.14 22.39 0.20 -10.43 16 20 C -0.06 -2.16 8.29 22.25 0.18 -1.98 16 21 C 0.07 1.34 2.80 44.92 0.13 1.47 16 22 C -0.14 -2.23 8.98 71.98 0.65 -1.58 16 23 C -0.18 -2.62 8.51 71.98 0.61 -2.01 16 24 H 0.24 3.29 7.80 -4.42 -0.03 3.26 16 25 H 0.07 1.44 6.36 -2.38 -0.02 1.42 16 26 H 0.09 2.34 6.18 -2.39 -0.01 2.32 16 27 H 0.06 1.10 7.04 -2.39 -0.02 1.08 16 28 H 0.10 1.92 5.98 -2.38 -0.01 1.90 16 29 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 31 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.12 5.22 5.70 -2.91 -0.02 5.21 16 33 H 0.14 3.71 8.04 -2.91 -0.02 3.69 16 34 H 0.07 1.44 7.03 -2.39 -0.02 1.43 16 35 H 0.06 0.91 6.53 -2.39 -0.02 0.90 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.79 6.54 -2.39 -0.02 0.77 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.90 6.70 -2.39 -0.02 0.88 16 Total: -1.00 -71.96 331.26 5.20 -66.76 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 1.03 Total: 24.77 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 5.96 Total: -49.06 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -3.59 Total: -73.23 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.22 Total: -14.66 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -71.96 5.20 -66.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932390571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.376 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds