Wall clock time and date at job start Mon Mar 30 2020 01:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 120.00035 * 2 1 4 4 C 1.53007 * 109.46782 * 124.99838 * 3 2 1 5 5 H 1.09005 * 112.78528 * 65.81285 * 4 3 2 6 6 C 1.53508 * 113.47402 * 196.61730 * 4 3 2 7 7 C 1.53516 * 83.57481 * 140.79593 * 6 4 3 8 8 N 1.47476 * 113.48118 * 295.00254 * 4 3 2 9 9 C 1.46900 * 110.99908 * 106.52762 * 8 4 3 10 10 C 1.50702 * 109.46676 * 187.49584 * 9 8 4 11 11 C 1.38313 * 119.92655 * 90.00338 * 10 9 8 12 12 C 1.38099 * 120.06371 * 179.97438 * 11 10 9 13 13 C 1.38875 * 119.93402 * 0.02562 * 12 11 10 14 14 O 1.35753 * 120.06794 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00310 * 5.53843 * 14 13 12 16 16 H 1.08001 * 119.99598 * 354.93752 * 15 14 13 17 17 C 1.38658 * 120.00407 * 174.94525 * 15 14 13 18 18 N 1.31551 * 119.99580 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47147 * 89.99500 * 19 17 15 21 21 H 1.48502 * 109.46813 * 209.99664 * 19 17 15 22 22 H 1.48497 * 109.47049 * 329.99581 * 19 17 15 23 23 C 1.38878 * 119.86117 * 0.27980 * 13 12 11 24 24 C 1.38097 * 119.93235 * 359.40232 * 23 13 12 25 25 H 1.07997 * 120.00032 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99438 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99709 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47280 * 5.00591 * 3 2 1 29 29 H 1.08999 * 109.47244 * 244.99817 * 3 2 1 30 30 H 1.08999 * 114.17309 * 27.14825 * 6 4 3 31 31 H 1.09000 * 114.17099 * 254.44073 * 6 4 3 32 32 H 1.08994 * 113.47811 * 219.20783 * 7 6 4 33 33 H 1.09000 * 113.52878 * 88.75241 * 7 6 4 34 34 H 1.08996 * 109.46962 * 67.50639 * 9 8 4 35 35 H 1.08993 * 109.47539 * 307.49608 * 9 8 4 36 36 H 1.07998 * 119.96346 * 359.97438 * 11 10 9 37 37 H 1.08004 * 120.02899 * 180.02562 * 12 11 10 38 38 H 0.97005 * 119.99547 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.03406 * 179.71791 * 23 13 12 40 40 H 1.07994 * 119.96746 * 180.32026 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 1 3.8275 0.5896 1.0944 6 6 3.5504 2.7397 1.5166 7 6 3.3989 2.2623 2.9677 8 7 2.3636 1.3244 2.4948 9 6 2.5010 0.0156 3.1477 10 6 1.6534 -0.0156 4.3934 11 6 0.3408 -0.4460 4.3243 12 6 -0.4383 -0.4762 5.4641 13 6 0.0973 -0.0735 6.6805 14 8 -0.6659 -0.1026 7.8027 15 6 -1.8975 -0.6400 7.6917 16 1 -2.2671 -0.9477 6.7248 17 6 -2.6895 -0.7974 8.8189 18 7 -2.2390 -0.4228 9.9968 19 14 -4.3954 -1.5426 8.6651 20 1 -4.3081 -3.0163 8.8250 21 1 -5.2775 -0.9816 9.7199 22 1 -4.9569 -1.2222 7.3282 23 6 1.4137 0.3642 6.7453 24 6 2.1897 0.3859 5.6032 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3587 2.1316 0.0897 29 1 2.6214 1.4026 -0.9314 30 1 2.8685 3.5430 1.2375 31 1 4.5810 2.9217 1.2120 32 1 3.0150 3.0299 3.6396 33 1 4.2880 1.7670 3.3579 34 1 3.5448 -0.1496 3.4143 35 1 2.1720 -0.7675 2.4647 36 1 -0.0752 -0.7587 3.3779 37 1 -1.4631 -0.8128 5.4096 38 1 -2.7929 -0.5333 10.7854 39 1 1.8317 0.6824 7.6890 40 1 3.2151 0.7213 5.6540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934469237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:24 Heat of formation + Delta-G solvation = 50.171052 kcal Electronic energy + Delta-G solvation = -20320.913846 eV Core-core repulsion = 17295.927136 eV Total energy + Delta-G solvation = -3024.986710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35068 -38.83993 -36.50108 -34.61265 -32.44034 -31.49125 -30.10291 -28.62564 -27.83895 -25.41138 -23.64746 -23.46783 -21.86630 -20.39425 -19.78951 -19.66057 -17.92087 -16.94085 -16.08695 -15.60318 -15.35953 -14.60729 -14.49939 -14.35035 -13.80100 -13.66845 -13.51151 -13.29300 -12.95233 -12.64972 -12.46331 -11.84600 -11.78566 -11.65970 -11.57390 -11.35257 -11.13435 -10.94520 -10.70844 -10.57849 -10.53466 -10.39357 -10.34970 -9.28879 -9.21981 -8.80965 -8.72252 -8.10615 -7.11370 -6.41457 -3.99996 2.28516 2.32918 2.36623 3.15052 3.15866 3.20652 3.99787 4.02786 4.36415 4.63110 4.69733 5.03793 5.07728 5.12933 5.17293 5.22782 5.30984 5.35312 5.39067 5.47166 5.53807 5.67556 5.77945 5.78352 5.85384 5.89730 5.91806 5.98559 6.11259 6.25215 6.37799 6.52650 6.65762 6.76142 6.80095 6.98194 7.08937 7.20283 7.30719 7.47854 7.50258 7.89179 8.04151 9.04515 9.75644 10.76847 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.003893 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.880289 B = 7191.536599 C = 8009.112577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.152 4.152 3 C -0.074 4.074 4 C 0.027 3.973 5 H 0.073 0.927 6 C -0.143 4.143 7 C -0.001 4.001 8 N -0.453 5.453 9 C 0.079 3.921 10 C -0.171 4.171 11 C -0.051 4.051 12 C -0.234 4.234 13 C 0.155 3.845 14 O -0.180 6.180 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.194 4.194 24 C -0.067 4.067 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.269 0.731 39 H 0.115 0.885 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.729 2.452 -17.616 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.170 4.170 3 C -0.112 4.112 4 C -0.082 4.082 5 H 0.091 0.909 6 C -0.181 4.181 7 C -0.130 4.130 8 N -0.175 5.175 9 C -0.048 4.048 10 C -0.173 4.173 11 C -0.070 4.070 12 C -0.254 4.254 13 C 0.101 3.899 14 O -0.083 6.083 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.213 4.213 24 C -0.086 4.086 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.954 2.659 -17.055 19.445 hybrid contribution -0.095 -0.821 0.027 0.827 sum 8.859 1.838 -17.028 19.282 Atomic orbital electron populations 1.23782 0.95958 1.01657 1.00791 1.22742 0.96051 0.97942 1.00228 1.20645 0.97826 0.96113 0.96576 1.23361 0.95427 0.97005 0.92443 0.90907 1.23225 1.01251 0.96953 0.96657 1.23745 0.94600 0.97638 0.97030 1.69048 1.38441 1.08245 1.01782 1.21357 0.97078 0.91891 0.94507 1.18997 0.95391 1.09586 0.93299 1.20541 0.92869 0.96849 0.96736 1.21146 1.01320 1.10255 0.92640 1.19382 0.90732 0.92619 0.87170 1.83974 1.26122 1.69532 1.28708 1.21326 0.88984 1.40741 0.95670 0.89118 1.25276 0.99887 0.97155 0.94209 1.70042 1.37356 1.44101 0.98450 0.85723 0.80253 0.79029 0.78500 1.19912 1.20272 1.19195 1.20152 0.92531 1.09915 0.98710 1.20430 0.97961 0.98345 0.91849 0.88880 0.88643 0.88115 0.90824 0.91069 0.88999 0.91037 0.89756 0.91663 0.94192 0.91033 0.87724 0.85692 0.92088 0.86714 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 14.32 29.01 0.42 -1.60 16 2 C -0.15 -1.58 8.56 -36.03 -0.31 -1.89 16 3 C -0.07 -0.71 5.72 -27.88 -0.16 -0.87 16 4 C 0.03 0.27 3.04 -71.44 -0.22 0.06 16 5 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 6 C -0.14 -1.30 8.01 -26.20 -0.21 -1.51 16 7 C 0.00 -0.01 7.69 -7.55 -0.06 -0.07 16 8 N -0.45 -5.92 5.95 -237.95 -1.42 -7.34 16 9 C 0.08 1.11 4.84 -4.97 -0.02 1.09 16 10 C -0.17 -3.05 5.45 -104.57 -0.57 -3.62 16 11 C -0.05 -0.99 9.69 -39.60 -0.38 -1.37 16 12 C -0.23 -5.29 9.17 -39.40 -0.36 -5.66 16 13 C 0.15 3.86 6.65 -39.11 -0.26 3.60 16 14 O -0.18 -5.26 9.76 0.05 0.00 -5.26 16 15 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 16 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 19 Si 0.94 20.87 29.55 -169.99 -5.02 15.84 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 C -0.19 -4.23 9.99 -39.40 -0.39 -4.63 16 24 C -0.07 -1.24 9.69 -39.61 -0.38 -1.62 16 25 H 0.09 0.95 8.06 -52.49 -0.42 0.53 16 26 H 0.10 1.04 7.84 -52.49 -0.41 0.63 16 27 H 0.10 0.99 8.06 -52.49 -0.42 0.56 16 28 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.68 7.44 -51.93 -0.39 0.29 16 34 H 0.04 0.52 7.29 -51.93 -0.38 0.14 16 35 H 0.07 0.97 7.27 -51.93 -0.38 0.60 16 36 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 40 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 335.48 15.07 5.06 5.06 Total: -1.00 -30.94 335.48 -9.22 -40.16 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.87 Total: 4.50 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -2.72 Total: -27.98 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: -0.66 Total: -32.31 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.94 -9.22 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934469237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.328 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds