Wall clock time and date at job start Mon Mar 30 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 120.00035 * 2 1 4 4 C 1.53007 * 109.46782 * 124.99838 * 3 2 1 5 5 H 1.09005 * 112.78528 * 65.81285 * 4 3 2 6 6 C 1.53508 * 113.47402 * 196.61730 * 4 3 2 7 7 C 1.53516 * 83.57481 * 140.79593 * 6 4 3 8 8 N 1.47476 * 113.48118 * 295.00254 * 4 3 2 9 9 C 1.46900 * 110.99908 * 106.52762 * 8 4 3 10 10 C 1.50702 * 109.46676 * 187.49584 * 9 8 4 11 11 C 1.38313 * 119.92655 * 90.00338 * 10 9 8 12 12 C 1.38099 * 120.06371 * 179.97438 * 11 10 9 13 13 C 1.38875 * 119.93402 * 0.02562 * 12 11 10 14 14 O 1.35753 * 120.06794 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00310 * 5.53843 * 14 13 12 16 16 H 1.08001 * 119.99598 * 354.93752 * 15 14 13 17 17 C 1.38658 * 120.00407 * 174.94525 * 15 14 13 18 18 N 1.31551 * 119.99580 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47147 * 89.99500 * 19 17 15 21 21 H 1.48502 * 109.46813 * 209.99664 * 19 17 15 22 22 H 1.48497 * 109.47049 * 329.99581 * 19 17 15 23 23 C 1.38878 * 119.86117 * 0.27980 * 13 12 11 24 24 C 1.38097 * 119.93235 * 359.40232 * 23 13 12 25 25 H 1.07997 * 120.00032 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99438 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99709 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47280 * 5.00591 * 3 2 1 29 29 H 1.08999 * 109.47244 * 244.99817 * 3 2 1 30 30 H 1.08999 * 114.17309 * 27.14825 * 6 4 3 31 31 H 1.09000 * 114.17099 * 254.44073 * 6 4 3 32 32 H 1.08994 * 113.47811 * 219.20783 * 7 6 4 33 33 H 1.09000 * 113.52878 * 88.75241 * 7 6 4 34 34 H 1.08996 * 109.46962 * 67.50639 * 9 8 4 35 35 H 1.08993 * 109.47539 * 307.49608 * 9 8 4 36 36 H 1.07998 * 119.96346 * 359.97438 * 11 10 9 37 37 H 1.08004 * 120.02899 * 180.02562 * 12 11 10 38 38 H 0.97005 * 119.99547 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.03406 * 179.71791 * 23 13 12 40 40 H 1.07994 * 119.96746 * 180.32026 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 1 3.8275 0.5896 1.0944 6 6 3.5504 2.7397 1.5166 7 6 3.3989 2.2623 2.9677 8 7 2.3636 1.3244 2.4948 9 6 2.5010 0.0156 3.1477 10 6 1.6534 -0.0156 4.3934 11 6 0.3408 -0.4460 4.3243 12 6 -0.4383 -0.4762 5.4641 13 6 0.0973 -0.0735 6.6805 14 8 -0.6659 -0.1026 7.8027 15 6 -1.8975 -0.6400 7.6917 16 1 -2.2671 -0.9477 6.7248 17 6 -2.6895 -0.7974 8.8189 18 7 -2.2390 -0.4228 9.9968 19 14 -4.3954 -1.5426 8.6651 20 1 -4.3081 -3.0163 8.8250 21 1 -5.2775 -0.9816 9.7199 22 1 -4.9569 -1.2222 7.3282 23 6 1.4137 0.3642 6.7453 24 6 2.1897 0.3859 5.6032 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9354 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3587 2.1316 0.0897 29 1 2.6214 1.4026 -0.9314 30 1 2.8685 3.5430 1.2375 31 1 4.5810 2.9217 1.2120 32 1 3.0150 3.0299 3.6396 33 1 4.2880 1.7670 3.3579 34 1 3.5448 -0.1496 3.4143 35 1 2.1720 -0.7675 2.4647 36 1 -0.0752 -0.7587 3.3779 37 1 -1.4631 -0.8128 5.4096 38 1 -2.7929 -0.5333 10.7854 39 1 1.8317 0.6824 7.6890 40 1 3.2151 0.7213 5.6540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934469237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:23 Heat of formation + Delta-G solvation = 30.933951 kcal Electronic energy + Delta-G solvation = -20321.748029 eV Core-core repulsion = 17295.927136 eV Total energy + Delta-G solvation = -3025.820893 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.32688 -40.55972 -38.24806 -35.42416 -34.38387 -32.89485 -31.78117 -29.58220 -29.05779 -27.37365 -24.93344 -24.31906 -23.54288 -21.95728 -20.60854 -20.46816 -19.81939 -18.84039 -17.05909 -16.60903 -16.56193 -16.29488 -15.95959 -15.74750 -15.47575 -15.14526 -14.53490 -14.48523 -14.42806 -14.23990 -13.66401 -13.45133 -13.10502 -12.93789 -12.66405 -12.54724 -12.35035 -12.21111 -12.14461 -12.07708 -11.80664 -11.61832 -11.29223 -11.17240 -10.78311 -10.04118 -9.77745 -9.65161 -8.89356 -8.47715 -6.15816 0.60328 0.69636 1.33897 1.43406 1.51582 1.52499 2.17427 2.77633 3.07798 3.33307 3.51656 3.60589 3.86596 3.99004 4.10757 4.18546 4.24999 4.31557 4.44135 4.47598 4.53308 4.57280 4.63373 4.68955 4.76913 4.84582 4.92684 5.05559 5.08778 5.10805 5.14623 5.20424 5.28461 5.35146 5.48657 5.61583 5.72240 5.83940 5.87742 6.00438 6.02697 6.20780 6.30715 6.97043 7.78215 8.75743 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.003893 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.880289 B = 7191.536599 C = 8009.112577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.074 4.074 4 C 0.032 3.968 5 H 0.089 0.911 6 C -0.130 4.130 7 C -0.008 4.008 8 N -0.480 5.480 9 C 0.083 3.917 10 C -0.146 4.146 11 C -0.053 4.053 12 C -0.243 4.243 13 C 0.112 3.888 14 O -0.233 6.233 15 C -0.415 4.415 16 H 0.099 0.901 17 C -0.022 4.022 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.254 1.254 23 C -0.204 4.204 24 C -0.059 4.059 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.112 0.888 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.374 2.192 -20.715 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.167 4.167 3 C -0.111 4.111 4 C -0.077 4.077 5 H 0.107 0.893 6 C -0.167 4.167 7 C -0.137 4.137 8 N -0.203 5.203 9 C -0.045 4.045 10 C -0.147 4.147 11 C -0.072 4.072 12 C -0.262 4.262 13 C 0.062 3.938 14 O -0.140 6.140 15 C -0.491 4.491 16 H 0.117 0.883 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.837 3.163 20 H -0.187 1.187 21 H -0.194 1.194 22 H -0.178 1.178 23 C -0.224 4.224 24 C -0.078 4.078 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.640 2.410 -20.211 22.967 hybrid contribution -0.327 -0.664 0.726 1.036 sum 10.313 1.746 -19.485 22.115 Atomic orbital electron populations 1.23851 0.96498 1.01578 1.02060 1.22937 0.95921 0.98786 0.99094 1.20678 0.97727 0.95178 0.97532 1.23428 0.95461 0.98016 0.90756 0.89283 1.23168 1.02603 0.96261 0.94715 1.23853 0.94489 0.97155 0.98218 1.68997 1.40139 1.07609 1.03579 1.21361 0.97252 0.93185 0.92705 1.19565 0.94939 1.05349 0.94880 1.20834 0.93438 0.96469 0.96460 1.21225 1.01432 1.10480 0.93090 1.19918 0.91903 0.94775 0.87231 1.83935 1.27001 1.72144 1.30940 1.21811 0.89504 1.41280 0.96502 0.88350 1.26585 1.04519 0.97391 0.93477 1.70185 1.39560 1.46687 0.99503 0.84594 0.74192 0.78342 0.79126 1.18708 1.19407 1.17790 1.20429 0.91907 1.09841 1.00179 1.20826 0.99226 0.96986 0.90730 0.88651 0.89293 0.87149 0.91984 0.88846 0.89328 0.88580 0.91336 0.90213 0.92066 0.90146 0.85314 0.86683 0.91818 0.86958 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.07 14.32 67.78 0.97 -3.10 16 2 C -0.15 -2.67 8.56 25.64 0.22 -2.45 16 3 C -0.07 -1.15 5.72 29.85 0.17 -0.98 16 4 C 0.03 0.51 3.04 42.19 0.13 0.64 16 5 H 0.09 1.19 7.91 -2.38 -0.02 1.17 16 6 C -0.13 -1.83 8.01 30.94 0.25 -1.58 16 7 C -0.01 -0.16 7.69 83.57 0.64 0.49 16 8 N -0.48 -10.81 5.95 -906.75 -5.40 -16.21 16 9 C 0.08 1.98 4.84 85.56 0.41 2.39 16 10 C -0.15 -4.80 5.45 -19.83 -0.11 -4.91 16 11 C -0.05 -1.99 9.69 22.25 0.22 -1.78 16 12 C -0.24 -11.22 9.17 22.39 0.21 -11.02 16 13 C 0.11 5.83 6.65 22.58 0.15 5.98 16 14 O -0.23 -14.55 9.76 -22.75 -0.22 -14.77 16 15 C -0.41 -24.96 9.49 67.92 0.64 -24.32 16 16 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16 17 C -0.02 -1.30 5.49 84.84 0.47 -0.84 16 18 N -0.92 -57.66 13.67 21.61 0.30 -57.36 16 19 Si 1.02 43.89 29.55 68.60 2.03 45.92 16 20 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 23 C -0.20 -9.06 9.99 22.39 0.22 -8.83 16 24 C -0.06 -2.06 9.69 22.25 0.22 -1.85 16 25 H 0.10 1.81 8.06 -2.91 -0.02 1.79 16 26 H 0.09 1.86 7.84 -2.91 -0.02 1.84 16 27 H 0.11 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.06 1.13 7.73 -2.39 -0.02 1.11 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.33 8.07 -2.39 -0.02 1.31 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.29 7.44 -2.39 -0.02 1.27 16 34 H 0.06 1.25 7.29 -2.39 -0.02 1.23 16 35 H 0.08 1.82 7.27 -2.39 -0.02 1.81 16 36 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 38 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 39 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 40 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -71.71 335.48 2.52 -69.19 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 1.01 Total: 25.39 kcal Atomic # 6 Polarization: -56.97 SS G_CDS: 4.81 Total: -52.16 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -5.10 Total: -73.57 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.22 Total: -14.77 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -71.71 2.52 -69.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934469237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.125 kcal (2) G-P(sol) polarization free energy of solvation -71.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds