Wall clock time and date at job start Mon Mar 30 2020 01:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00080 * 2 1 4 4 C 1.50703 * 120.00095 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46957 * 95.00061 * 4 2 1 6 6 N 1.46503 * 109.46820 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00051 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99353 * 0.02562 * 7 6 5 9 9 C 1.50692 * 119.99931 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47000 * 180.02562 * 9 7 6 11 11 C 1.37645 * 120.13007 * 265.30719 * 10 9 7 12 12 C 1.38606 * 120.24649 * 180.32491 * 11 10 9 13 13 C 1.38653 * 120.50471 * 359.65965 * 12 11 10 14 14 C 1.37600 * 120.24898 * 0.02562 * 13 12 11 15 15 C 1.40696 * 120.12867 * 84.99790 * 10 9 7 16 16 C 1.41400 * 120.24530 * 359.97438 * 15 10 9 17 17 H 1.08003 * 119.99719 * 25.87056 * 16 15 10 18 18 C 1.39942 * 120.00205 * 205.88123 * 16 15 10 19 19 N 1.30821 * 119.99968 * 16.29869 * 18 16 15 20 20 Si 1.86803 * 120.00009 * 196.30797 * 18 16 15 21 21 H 1.48496 * 109.47194 * 265.18190 * 20 18 16 22 22 H 1.48505 * 109.46937 * 25.18007 * 20 18 16 23 23 H 1.48498 * 109.47234 * 145.18150 * 20 18 16 24 24 H 1.08005 * 119.99597 * 0.02562 * 1 2 3 25 25 H 1.07994 * 119.99803 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47144 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47027 * 299.99612 * 3 2 1 28 28 H 1.08997 * 109.47532 * 60.00198 * 3 2 1 29 29 H 1.08994 * 109.46999 * 335.00036 * 4 2 1 30 30 H 1.08997 * 109.47239 * 214.99952 * 4 2 1 31 31 H 1.08994 * 109.47287 * 60.00151 * 5 4 2 32 32 H 1.08997 * 109.47057 * 300.00002 * 5 4 2 33 33 H 0.97002 * 120.00149 * 0.02562 * 6 5 4 34 34 H 1.09000 * 109.47297 * 60.00731 * 9 7 6 35 35 H 1.08997 * 109.47185 * 300.00030 * 9 7 6 36 36 H 1.07994 * 119.87429 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.74758 * 179.69746 * 12 11 10 38 38 H 1.07998 * 119.87893 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.12664 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00001 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 7 3.1594 -2.9536 -1.4357 7 6 3.5839 -3.4872 -2.5983 8 8 3.3603 -2.9164 -3.6448 9 6 4.3364 -4.7928 -2.5977 10 6 4.6949 -5.1665 -4.0130 11 6 3.8786 -6.0090 -4.7331 12 6 4.2096 -6.3597 -6.0326 13 6 5.3604 -5.8619 -6.6245 14 6 6.1878 -5.0131 -5.9258 15 6 5.8620 -4.6504 -4.6056 16 6 6.7045 -3.7785 -3.8781 17 1 6.7223 -3.8204 -2.7990 18 6 7.5149 -2.8610 -4.5562 19 7 7.2756 -2.5794 -5.8111 20 14 8.9386 -2.0386 -3.6695 21 1 8.4977 -0.7238 -3.1384 22 1 9.3868 -2.9009 -2.5466 23 1 10.0629 -1.8373 -4.6184 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 3.1352 1.1059 0.0005 27 1 1.8002 1.8766 -0.8900 28 1 1.8003 1.8767 0.8900 29 1 1.4386 -2.0852 0.4352 30 1 2.9742 -1.1986 0.5899 31 1 3.0523 -0.9044 -1.8709 32 1 1.5167 -1.7910 -2.0257 33 1 3.3379 -3.4102 -0.5987 34 1 3.7108 -5.5725 -2.1632 35 1 5.2472 -4.6870 -2.0084 36 1 2.9795 -6.4021 -4.2822 37 1 3.5658 -7.0252 -6.5885 38 1 5.6083 -6.1415 -7.6378 39 1 7.0835 -4.6262 -6.3889 40 1 7.8376 -1.9438 -6.2813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117775396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:39 Heat of formation + Delta-G solvation = -36.885263 kcal Electronic energy + Delta-G solvation = -20394.603567 eV Core-core repulsion = 17365.841812 eV Total energy + Delta-G solvation = -3028.761755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72975 -39.16466 -37.69703 -35.46582 -35.19116 -33.44093 -31.34861 -30.56270 -28.35216 -28.03789 -26.82633 -24.18449 -22.81668 -22.10800 -21.01408 -19.27675 -19.01900 -17.66410 -17.35996 -16.95189 -16.62854 -16.16642 -15.83566 -15.47975 -15.19911 -14.93170 -14.65761 -14.37407 -14.10352 -13.94451 -13.55320 -13.28285 -12.95363 -12.89374 -12.76096 -12.62628 -12.58473 -12.47045 -12.15407 -12.08792 -11.92981 -11.30890 -11.16421 -11.00341 -10.72497 -9.99560 -9.92614 -9.21012 -9.15926 -8.56079 -6.25361 1.00961 1.13802 1.28789 1.35870 1.48814 1.54601 1.91816 2.21164 2.45947 2.82645 3.75739 3.94098 3.98550 4.09459 4.19741 4.31515 4.41764 4.51113 4.61775 4.63339 4.67626 4.74434 4.80844 4.83159 4.96394 5.01408 5.06633 5.11135 5.15030 5.26311 5.37863 5.56336 5.58575 5.73663 5.80546 5.95464 6.05611 6.15739 6.23077 6.45106 6.72652 6.79279 7.00776 7.13807 7.53815 8.41731 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005304 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.443479 B = 5277.688775 C = 6639.911748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 C -0.123 4.123 4 C -0.084 4.084 5 C 0.129 3.871 6 N -0.725 5.725 7 C 0.513 3.487 8 O -0.577 6.577 9 C -0.068 4.068 10 C -0.187 4.187 11 C -0.092 4.092 12 C -0.245 4.245 13 C -0.117 4.117 14 C -0.197 4.197 15 C 0.097 3.903 16 C -0.485 4.485 17 H 0.083 0.917 18 C 0.030 3.970 19 N -0.833 5.833 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.248 1.248 23 H -0.270 1.270 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.416 0.584 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 2.699 14.645 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.137 4.137 3 C -0.180 4.180 4 C -0.122 4.122 5 C 0.005 3.995 6 N -0.380 5.380 7 C 0.301 3.699 8 O -0.455 6.455 9 C -0.107 4.107 10 C -0.189 4.189 11 C -0.110 4.110 12 C -0.264 4.264 13 C -0.136 4.136 14 C -0.216 4.216 15 C 0.094 3.906 16 C -0.515 4.515 17 H 0.101 0.899 18 C -0.184 4.184 19 N -0.460 5.460 20 Si 0.796 3.204 21 H -0.195 1.195 22 H -0.171 1.171 23 H -0.194 1.194 24 H 0.125 0.875 25 H 0.122 0.878 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.252 0.748 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.626 3.261 13.707 16.021 hybrid contribution 0.731 0.455 -0.158 0.875 sum -6.895 3.716 13.548 15.650 Atomic orbital electron populations 1.23868 0.95140 1.02735 1.01130 1.21717 0.95732 0.95555 1.00732 1.20902 1.00006 0.94566 1.02525 1.20835 1.01464 0.95711 0.94157 1.21169 0.95214 0.85167 0.97939 1.45892 1.58606 1.24387 1.09125 1.21218 0.78113 0.87380 0.83149 1.90691 1.57278 1.63637 1.33874 1.20306 1.00651 0.93896 0.95853 1.19510 0.96811 1.05491 0.97096 1.20743 0.97854 0.97799 0.94611 1.20710 1.00412 1.08371 0.96883 1.20949 0.96031 0.98079 0.98515 1.21303 1.01100 1.01773 0.97437 1.17750 0.90755 0.89899 0.92156 1.19738 1.20836 1.16153 0.94774 0.89855 1.26780 0.99726 0.96469 0.95411 1.69943 1.35589 1.28064 1.12387 0.85307 0.77240 0.78565 0.79293 1.19526 1.17061 1.19446 0.87470 0.87850 0.92242 0.91865 0.90137 0.88978 0.89424 0.94249 0.93330 0.74752 0.86601 0.88098 0.86496 0.86759 0.87812 0.88644 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 13.93 67.78 0.94 -2.26 16 2 C -0.14 -2.52 5.31 -16.49 -0.09 -2.60 16 3 C -0.12 -2.12 10.05 71.24 0.72 -1.40 16 4 C -0.08 -1.54 5.41 29.85 0.16 -1.38 16 5 C 0.13 3.57 5.66 86.38 0.49 4.06 16 6 N -0.73 -20.89 5.56 -463.07 -2.57 -23.46 16 7 C 0.51 20.72 7.82 87.65 0.69 21.41 16 8 O -0.58 -30.56 16.03 -3.04 -0.05 -30.61 16 9 C -0.07 -2.56 5.35 29.10 0.16 -2.40 16 10 C -0.19 -9.09 4.43 -19.40 -0.09 -9.18 16 11 C -0.09 -4.20 9.66 22.22 0.21 -3.98 16 12 C -0.24 -11.36 10.05 22.46 0.23 -11.14 16 13 C -0.12 -5.92 10.02 22.22 0.22 -5.70 16 14 C -0.20 -11.09 8.68 22.73 0.20 -10.90 16 15 C 0.10 5.37 5.56 -21.29 -0.12 5.25 16 16 C -0.49 -26.35 8.46 23.46 0.20 -26.16 16 17 H 0.08 4.18 6.36 -2.91 -0.02 4.16 16 18 C 0.03 1.57 5.16 85.26 0.44 2.01 16 19 N -0.83 -47.13 10.98 21.83 0.24 -46.89 16 20 Si 0.98 39.65 29.59 68.60 2.03 41.68 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 23 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 24 H 0.11 1.55 8.05 -2.91 -0.02 1.53 16 25 H 0.10 1.59 7.99 -2.91 -0.02 1.57 16 26 H 0.06 1.06 8.00 -2.39 -0.02 1.05 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.37 7.99 -2.39 -0.02 1.35 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.42 8.32 8.47 -92.71 -0.79 7.53 16 34 H 0.12 3.35 8.06 -2.39 -0.02 3.33 16 35 H 0.10 3.61 6.48 -2.39 -0.02 3.60 16 36 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.10 5.64 6.23 -2.91 -0.02 5.62 16 40 H 0.28 14.57 8.30 -92.71 -0.77 13.80 16 Total: -1.00 -73.10 339.84 4.25 -68.85 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.24 Total: 34.81 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 4.36 Total: -44.37 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -2.33 Total: -70.35 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.05 Total: -30.61 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -73.10 4.25 -68.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117775396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.965 kcal (2) G-P(sol) polarization free energy of solvation -73.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds