Wall clock time and date at job start Mon Mar 30 2020 01:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00101 * 2 1 4 4 C 1.53000 * 109.47235 * 247.78492 * 3 2 1 5 5 C 1.52997 * 109.47267 * 127.78095 * 3 2 1 6 6 N 1.46504 * 109.47018 * 7.77729 * 3 2 1 7 7 C 1.34780 * 119.99894 * 183.37095 * 6 3 2 8 8 O 1.21281 * 120.00101 * 0.02562 * 7 6 3 9 9 C 1.50694 * 119.99661 * 180.02562 * 7 6 3 10 10 C 1.50704 * 109.47184 * 180.02562 * 9 7 6 11 11 C 1.37648 * 120.12999 * 265.30815 * 10 9 7 12 12 C 1.38607 * 120.24809 * 180.31581 * 11 10 9 13 13 C 1.38662 * 120.50202 * 359.67377 * 12 11 10 14 14 C 1.37604 * 120.24604 * 359.97438 * 13 12 11 15 15 C 1.40694 * 120.12523 * 84.99720 * 10 9 7 16 16 C 1.41393 * 120.24672 * 359.97438 * 15 10 9 17 17 H 1.08002 * 120.00013 * 333.82281 * 16 15 10 18 18 C 1.39938 * 120.00259 * 153.82816 * 16 15 10 19 19 N 1.30825 * 119.99946 * 334.33058 * 18 16 15 20 20 Si 1.86802 * 120.00278 * 154.33727 * 18 16 15 21 21 H 1.48504 * 109.47367 * 179.97438 * 20 18 16 22 22 H 1.48493 * 109.47023 * 299.99920 * 20 18 16 23 23 H 1.48499 * 109.46945 * 59.99641 * 20 18 16 24 24 H 1.07998 * 120.00277 * 6.24517 * 1 2 3 25 25 H 1.08005 * 119.99695 * 186.25241 * 1 2 3 26 26 H 1.08004 * 119.99946 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47718 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46802 * 299.99688 * 4 3 2 29 29 H 1.09000 * 109.47085 * 59.99481 * 4 3 2 30 30 H 1.08993 * 109.47138 * 299.99904 * 5 3 2 31 31 H 1.09001 * 109.47141 * 60.00085 * 5 3 2 32 32 H 1.09000 * 109.46827 * 179.97438 * 5 3 2 33 33 H 0.97003 * 120.00153 * 3.38146 * 6 3 2 34 34 H 1.09003 * 109.47600 * 60.00242 * 9 7 6 35 35 H 1.08994 * 109.47851 * 300.00256 * 9 7 6 36 36 H 1.07999 * 119.87453 * 0.02562 * 11 10 9 37 37 H 1.07997 * 119.75213 * 179.69318 * 12 11 10 38 38 H 1.07994 * 119.87867 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.12336 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00179 * 354.39961 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.7909 1.4740 -1.3354 5 6 3.0839 1.3049 1.1401 6 7 1.1225 2.4122 0.1869 7 6 1.5642 3.6851 0.1523 8 8 2.7405 3.9140 -0.0340 9 6 0.5963 4.8239 0.3452 10 6 1.3380 6.1332 0.2618 11 6 1.7873 6.7471 1.4089 12 6 2.4639 7.9545 1.3356 13 6 2.7021 8.5544 0.1083 14 6 2.2684 7.9551 -1.0519 15 6 1.5795 6.7295 -0.9895 16 6 1.1290 6.1046 -2.1751 17 1 0.9916 5.0337 -2.2025 18 6 0.8612 6.8736 -3.3131 19 7 0.5340 8.1342 -3.1886 20 14 0.9705 6.1003 -5.0100 21 1 0.6422 7.1183 -6.0401 22 1 2.3482 5.5939 -5.2353 23 1 0.0076 4.9737 -5.1035 24 1 -0.5400 0.9297 -0.1017 25 1 -0.5400 -0.9298 0.1019 26 1 1.8500 -0.9353 -0.0004 27 1 3.3363 2.4178 -1.3353 28 1 3.4910 0.6503 -1.4745 29 1 2.0639 1.4741 -2.1476 30 1 2.5657 1.1846 2.0914 31 1 3.7840 0.4811 1.0009 32 1 3.6291 2.2487 1.1397 33 1 0.1816 2.2292 0.3357 34 1 0.1221 4.7363 1.3227 35 1 -0.1662 4.7886 -0.4329 36 1 1.6078 6.2885 2.3701 37 1 2.8086 8.4316 2.2411 38 1 3.2307 9.4950 0.0628 39 1 2.4554 8.4238 -2.0068 40 1 0.3977 8.5151 -2.3070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121147457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:44 Heat of formation + Delta-G solvation = -4.539033 kcal Electronic energy + Delta-G solvation = -21276.144388 eV Core-core repulsion = 18248.785271 eV Total energy + Delta-G solvation = -3027.359117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.84482 -37.84413 -36.37497 -33.80211 -32.25532 -31.63669 -30.70413 -29.17390 -27.05316 -26.69132 -24.84925 -22.52761 -21.06482 -20.88897 -19.61276 -18.72968 -17.72149 -16.90608 -15.49845 -15.00957 -14.83108 -14.51944 -14.11045 -14.03009 -13.66110 -13.47686 -13.21262 -13.12911 -12.30070 -12.27878 -12.01201 -11.82874 -11.70419 -11.59166 -11.29957 -11.17262 -10.90609 -10.80198 -10.77120 -10.42891 -10.36191 -9.61226 -9.60470 -9.33882 -8.95025 -8.90433 -8.64199 -7.50823 -7.45760 -7.08311 -4.37428 2.10451 2.79623 2.89355 3.17949 3.31512 3.36557 3.39890 3.63848 4.05458 4.62420 4.64925 4.96556 5.20587 5.32993 5.42392 5.62441 5.72553 5.80829 5.86498 5.97880 5.98804 6.11488 6.11712 6.21559 6.30460 6.37156 6.40529 6.42526 6.54165 6.63769 6.73683 6.99117 7.04506 7.25582 7.46929 7.72435 7.87391 7.90709 7.98610 8.02138 8.25924 8.39541 8.83626 8.91538 8.97444 10.11398 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.006859 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.080992 B = 4081.532530 C = 5327.082425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C 0.199 3.801 4 C -0.162 4.162 5 C -0.155 4.155 6 N -0.741 5.741 7 C 0.518 3.482 8 O -0.516 6.516 9 C -0.072 4.072 10 C -0.182 4.182 11 C -0.069 4.069 12 C -0.253 4.253 13 C -0.087 4.087 14 C -0.215 4.215 15 C 0.117 3.883 16 C -0.517 4.517 17 H 0.072 0.928 18 C 0.041 3.959 19 N -0.799 5.799 20 Si 1.059 2.941 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.277 1.277 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.394 0.606 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 -12.865 4.292 13.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.164 4.164 3 C 0.113 3.887 4 C -0.220 4.220 5 C -0.213 4.213 6 N -0.399 5.399 7 C 0.306 3.694 8 O -0.390 6.390 9 C -0.112 4.112 10 C -0.184 4.184 11 C -0.088 4.088 12 C -0.272 4.272 13 C -0.105 4.105 14 C -0.234 4.234 15 C 0.114 3.886 16 C -0.545 4.545 17 H 0.090 0.910 18 C -0.181 4.181 19 N -0.423 5.423 20 Si 0.883 3.117 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.203 1.203 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.137 0.863 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.231 0.769 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.015 -12.285 2.529 12.583 hybrid contribution -0.325 -0.530 1.777 1.882 sum -1.339 -12.815 4.306 13.585 Atomic orbital electron populations 1.23781 0.96075 1.02070 1.01597 1.23114 0.96166 0.97743 0.99387 1.19197 0.89209 0.84189 0.96129 1.22213 1.00593 1.04086 0.95065 1.22126 0.98604 1.03570 0.96996 1.46551 1.11296 1.05631 1.76418 1.21105 0.90167 0.83000 0.75152 1.90605 1.17858 1.84140 1.46361 1.20262 0.97347 0.91518 1.02024 1.19005 1.08786 0.97324 0.93256 1.20352 0.97491 0.95114 0.95821 1.20252 1.11633 0.99296 0.96012 1.20599 0.98843 0.97786 0.93306 1.21126 1.05869 0.99748 0.96704 1.17382 0.88626 0.90895 0.91691 1.20428 1.41308 0.96562 0.96232 0.90967 1.26903 0.91468 0.94451 1.05263 1.70451 1.27358 1.13646 1.30821 0.83732 0.78021 0.76049 0.73926 1.19910 1.20022 1.20265 0.88181 0.88041 0.86300 0.89164 0.92453 0.92733 0.92931 0.92224 0.90176 0.76870 0.90799 0.88797 0.89679 0.89522 0.89447 0.87861 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 13.88 29.01 0.40 -1.50 16 2 C -0.15 -1.56 8.77 -36.03 -0.32 -1.87 16 3 C 0.20 2.73 1.01 -132.97 -0.13 2.59 16 4 C -0.16 -2.44 8.33 37.16 0.31 -2.13 16 5 C -0.15 -2.10 8.43 37.16 0.31 -1.79 16 6 N -0.74 -11.12 4.95 -48.69 -0.24 -11.36 16 7 C 0.52 10.03 6.88 -10.99 -0.08 9.95 16 8 O -0.52 -11.91 12.25 5.56 0.07 -11.84 16 9 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16 10 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 11 C -0.07 -1.60 9.66 -39.66 -0.38 -1.99 16 12 C -0.25 -5.87 10.05 -39.29 -0.39 -6.26 16 13 C -0.09 -2.10 10.02 -39.66 -0.40 -2.50 16 14 C -0.22 -5.70 7.96 -38.87 -0.31 -6.01 16 15 C 0.12 3.11 5.29 -106.83 -0.56 2.55 16 16 C -0.52 -13.66 8.06 -37.75 -0.30 -13.97 16 17 H 0.07 1.88 6.75 -52.49 -0.35 1.53 16 18 C 0.04 1.04 4.93 -17.34 -0.09 0.96 16 19 N -0.80 -21.33 12.34 55.55 0.69 -20.64 16 20 Si 1.06 22.17 30.00 -169.99 -5.10 17.07 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H 0.10 0.97 5.66 -52.49 -0.30 0.67 16 25 H 0.10 0.79 8.06 -52.48 -0.42 0.36 16 26 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 27 H 0.09 1.69 5.93 -51.93 -0.31 1.38 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.34 6.42 -51.93 -0.33 1.01 16 33 H 0.39 4.87 5.81 -40.82 -0.24 4.64 16 34 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 35 H 0.09 1.85 7.06 -51.93 -0.37 1.48 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.10 2.82 6.54 -52.49 -0.34 2.47 16 40 H 0.30 8.17 6.72 -40.82 -0.27 7.89 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -29.88 325.55 -7.77 -37.64 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -5.53 Total: 12.61 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -2.55 Total: -28.38 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.44 Total: -32.00 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.84 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.10 Total: 17.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.88 -7.77 -37.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121147457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.104 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds