Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30986 * 1 3 3 C 1.50707 * 119.99927 * 2 1 4 4 H 1.09001 * 109.47122 * 359.97438 * 3 2 1 5 5 C 1.50707 * 109.46992 * 120.00088 * 3 2 1 6 6 O 1.21281 * 119.99904 * 119.99870 * 5 3 2 7 7 N 1.34775 * 119.99886 * 299.99985 * 5 3 2 8 8 C 1.46497 * 120.00077 * 180.02562 * 7 5 3 9 9 H 1.09002 * 109.47031 * 324.99543 * 8 7 5 10 10 C 1.50699 * 109.47154 * 205.00032 * 8 7 5 11 11 H 1.08000 * 120.00147 * 359.97438 * 10 8 7 12 12 C 1.37878 * 120.00379 * 179.97438 * 10 8 7 13 13 N 1.31518 * 119.99761 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00461 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46846 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47372 * 119.99935 * 14 12 10 17 17 H 1.48500 * 109.47110 * 240.00168 * 14 12 10 18 18 C 1.52992 * 109.47408 * 84.99397 * 8 7 5 19 19 C 1.52997 * 109.47482 * 295.00294 * 18 8 7 20 20 C 1.50702 * 109.47035 * 239.99708 * 3 2 1 21 21 C 1.38231 * 120.00246 * 299.72882 * 20 3 2 22 22 C 1.38239 * 120.00136 * 179.79002 * 21 20 3 23 23 C 1.38231 * 119.99515 * 0.43779 * 22 21 20 24 24 C 1.38237 * 120.00220 * 359.81509 * 23 22 21 25 25 C 1.38230 * 120.00137 * 359.97438 * 24 23 22 26 26 H 1.08000 * 120.00363 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.00155 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00363 * 180.02562 * 2 1 3 29 29 H 0.97001 * 119.99673 * 0.02562 * 7 5 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47103 * 175.00047 * 18 8 7 32 32 H 1.08998 * 109.46862 * 55.00859 * 18 8 7 33 33 H 1.09002 * 109.47153 * 59.99783 * 19 18 8 34 34 H 1.09001 * 109.46832 * 299.99974 * 19 18 8 35 35 H 1.09004 * 109.47261 * 179.97438 * 19 18 8 36 36 H 1.08004 * 120.00052 * 359.97438 * 21 20 3 37 37 H 1.07995 * 120.00181 * 180.27426 * 22 21 20 38 38 H 1.08007 * 119.99813 * 179.83570 * 23 22 21 39 39 H 1.08005 * 119.99966 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.99979 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 -0.0005 5 6 2.9298 1.3850 1.2305 6 8 4.1324 1.4958 1.1192 7 7 2.3682 1.3332 2.4546 8 6 3.2104 1.4113 3.6508 9 1 4.1580 0.9070 3.4615 10 6 2.5075 0.7434 4.8044 11 1 1.5310 0.3050 4.6611 12 6 3.1111 0.6921 6.0430 13 7 4.3005 1.2255 6.2175 14 14 2.2396 -0.1352 7.4732 15 1 0.9235 -0.6516 7.0190 16 1 3.0682 -1.2616 7.9732 17 1 2.0341 0.8506 8.5647 18 6 3.4735 2.8788 3.9943 19 6 4.2959 3.5246 2.8775 20 6 2.9298 1.3850 -1.2304 21 6 3.9127 0.4373 -1.4463 22 6 4.7046 0.5080 -2.5772 23 6 4.5196 1.5316 -3.4876 24 6 3.5401 2.4823 -3.2690 25 6 2.7454 2.4091 -2.1404 26 1 -0.5401 0.9353 0.0004 27 1 -0.5401 -0.9354 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.4064 1.2442 2.5435 30 1 4.7254 1.1891 7.0888 31 1 4.0247 2.9390 4.9328 32 1 2.5238 3.4039 4.0965 33 1 3.7447 3.4643 1.9390 34 1 5.2456 2.9994 2.7754 35 1 4.4830 4.5703 3.1221 36 1 4.0600 -0.3602 -0.7330 37 1 5.4696 -0.2349 -2.7481 38 1 5.1400 1.5884 -4.3698 39 1 3.3958 3.2823 -3.9801 40 1 1.9799 3.1516 -1.9699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123786755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = -2.940483 kcal Electronic energy + Delta-G solvation = -20995.032086 eV Core-core repulsion = 17967.742287 eV Total energy + Delta-G solvation = -3027.289799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.90666 -38.33210 -35.29462 -34.69717 -32.29716 -31.05021 -30.81913 -30.69868 -27.52446 -26.29513 -23.07816 -22.55592 -21.65984 -20.66345 -19.58172 -19.16924 -17.21292 -16.82686 -15.82790 -15.39464 -15.10254 -14.97771 -14.36246 -14.25067 -13.95205 -13.30306 -13.10719 -13.04293 -12.71216 -12.46165 -12.14610 -11.83346 -11.52084 -11.28620 -11.23107 -10.99939 -10.90845 -10.84249 -10.68472 -10.30675 -10.16653 -9.73161 -9.60258 -9.02596 -8.84859 -8.64687 -8.53262 -8.47138 -7.77765 -6.11720 -4.20893 1.48895 1.60139 2.30274 3.23472 3.31517 3.34016 3.42945 3.88291 4.22014 4.41186 4.90643 4.92226 5.06384 5.14098 5.19691 5.19736 5.27596 5.52622 5.65411 5.68107 5.77760 5.94315 6.12259 6.21627 6.40948 6.47678 6.57944 6.60280 6.66592 6.67933 6.70124 6.83540 7.05762 7.15933 7.22244 7.39002 7.48725 7.63762 7.75411 7.91903 8.19488 8.70362 8.79590 9.17080 9.46810 10.93616 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.004748 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.962998 B = 5895.221470 C = 6390.250044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.134 4.134 3 C -0.048 4.048 4 H 0.099 0.901 5 C 0.510 3.490 6 O -0.538 6.538 7 N -0.705 5.705 8 C 0.271 3.729 9 H 0.049 0.951 10 C -0.532 4.532 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.882 5.882 14 Si 0.900 3.100 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.127 4.127 19 C -0.136 4.136 20 C -0.052 4.052 21 C -0.079 4.079 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.114 4.114 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.388 0.612 30 H 0.263 0.737 31 H 0.098 0.902 32 H 0.030 0.970 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.021 0.979 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 0.221 -15.170 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.153 4.153 3 C -0.069 4.069 4 H 0.117 0.883 5 C 0.293 3.707 6 O -0.416 6.416 7 N -0.352 5.352 8 C 0.169 3.831 9 H 0.066 0.934 10 C -0.571 4.571 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.520 5.520 14 Si 0.727 3.273 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.166 4.166 19 C -0.194 4.194 20 C -0.052 4.052 21 C -0.097 4.097 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.132 4.132 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.220 0.780 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.366 0.331 -15.055 15.679 hybrid contribution -0.875 -0.391 0.939 1.342 sum -5.241 -0.059 -14.116 15.058 Atomic orbital electron populations 1.23837 0.95485 1.02085 1.00820 1.22625 0.95734 0.96976 0.99928 1.19602 0.96941 0.97800 0.92582 0.88264 1.19975 0.88583 0.77714 0.84410 1.90693 1.14606 1.49796 1.86472 1.46451 1.10939 1.71559 1.06247 1.18774 0.91196 0.93052 0.80071 0.93367 1.21277 1.04248 1.37329 0.94223 0.92068 1.24884 0.94883 0.95248 0.98656 1.69909 1.14272 1.43993 1.23810 0.86421 0.79602 0.79171 0.82077 1.19747 1.20906 1.20896 1.21933 0.98096 0.96699 0.99903 1.21832 1.00838 0.97741 0.98967 1.19248 0.96319 0.95387 0.94253 1.20942 0.94053 0.98542 0.96159 1.21095 0.99584 0.98763 0.94735 1.21071 0.98464 0.95365 0.99442 1.21001 0.96568 0.99160 0.97730 1.20968 0.99978 0.97717 0.94581 0.88397 0.88024 0.86810 0.78001 0.92654 0.88337 0.95110 0.94300 0.93168 0.95941 0.86192 0.86340 0.86552 0.86426 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 14.32 29.02 0.42 -1.62 16 2 C -0.13 -1.76 8.19 -36.02 -0.30 -2.06 16 3 C -0.05 -0.71 2.67 -94.07 -0.25 -0.96 16 4 H 0.10 1.30 7.52 -51.93 -0.39 0.91 16 5 C 0.51 9.90 5.58 -10.98 -0.06 9.84 16 6 O -0.54 -12.30 12.23 5.56 0.07 -12.23 16 7 N -0.70 -14.44 4.92 -54.94 -0.27 -14.71 16 8 C 0.27 6.77 2.24 -69.09 -0.15 6.61 16 9 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 10 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 12 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 13 N -0.88 -24.68 11.30 55.43 0.63 -24.06 16 14 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.13 -3.11 5.45 -26.74 -0.15 -3.25 16 19 C -0.14 -3.09 8.52 37.16 0.32 -2.77 16 20 C -0.05 -0.77 4.39 -104.62 -0.46 -1.23 16 21 C -0.08 -1.21 8.03 -39.58 -0.32 -1.52 16 22 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 23 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 24 C -0.13 -1.54 10.05 -39.58 -0.40 -1.93 16 25 C -0.11 -1.52 9.67 -39.59 -0.38 -1.91 16 26 H 0.10 0.96 7.83 -52.49 -0.41 0.55 16 27 H 0.10 0.98 8.06 -52.48 -0.42 0.56 16 28 H 0.11 1.51 8.05 -52.49 -0.42 1.09 16 29 H 0.39 7.06 8.42 -40.82 -0.34 6.72 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.10 2.66 5.96 -51.93 -0.31 2.35 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 34 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.12 1.90 7.97 -52.48 -0.42 1.48 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.12 1.33 7.95 -52.49 -0.42 0.91 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -29.90 331.84 -8.40 -38.31 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.88 Total: 9.55 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -2.92 Total: -17.38 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.36 Total: -38.77 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.07 Total: -12.23 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.90 -8.40 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123786755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.366 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds