Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30986 * 1 3 3 C 1.50707 * 119.99927 * 2 1 4 4 H 1.09001 * 109.47122 * 359.97438 * 3 2 1 5 5 C 1.50707 * 109.46992 * 120.00088 * 3 2 1 6 6 O 1.21281 * 119.99904 * 119.99870 * 5 3 2 7 7 N 1.34775 * 119.99886 * 299.99985 * 5 3 2 8 8 C 1.46497 * 120.00077 * 180.02562 * 7 5 3 9 9 H 1.09002 * 109.47031 * 324.99543 * 8 7 5 10 10 C 1.50699 * 109.47154 * 205.00032 * 8 7 5 11 11 H 1.08000 * 120.00147 * 359.97438 * 10 8 7 12 12 C 1.37878 * 120.00379 * 179.97438 * 10 8 7 13 13 N 1.31518 * 119.99761 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 120.00461 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46846 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47372 * 119.99935 * 14 12 10 17 17 H 1.48500 * 109.47110 * 240.00168 * 14 12 10 18 18 C 1.52992 * 109.47408 * 84.99397 * 8 7 5 19 19 C 1.52997 * 109.47482 * 295.00294 * 18 8 7 20 20 C 1.50702 * 109.47035 * 239.99708 * 3 2 1 21 21 C 1.38231 * 120.00246 * 299.72882 * 20 3 2 22 22 C 1.38239 * 120.00136 * 179.79002 * 21 20 3 23 23 C 1.38231 * 119.99515 * 0.43779 * 22 21 20 24 24 C 1.38237 * 120.00220 * 359.81509 * 23 22 21 25 25 C 1.38230 * 120.00137 * 359.97438 * 24 23 22 26 26 H 1.08000 * 120.00363 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.00155 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00363 * 180.02562 * 2 1 3 29 29 H 0.97001 * 119.99673 * 0.02562 * 7 5 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47103 * 175.00047 * 18 8 7 32 32 H 1.08998 * 109.46862 * 55.00859 * 18 8 7 33 33 H 1.09002 * 109.47153 * 59.99783 * 19 18 8 34 34 H 1.09001 * 109.46832 * 299.99974 * 19 18 8 35 35 H 1.09004 * 109.47261 * 179.97438 * 19 18 8 36 36 H 1.08004 * 120.00052 * 359.97438 * 21 20 3 37 37 H 1.07995 * 120.00181 * 180.27426 * 22 21 20 38 38 H 1.08007 * 119.99813 * 179.83570 * 23 22 21 39 39 H 1.08005 * 119.99966 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.99979 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 -0.0005 5 6 2.9298 1.3850 1.2305 6 8 4.1324 1.4958 1.1192 7 7 2.3682 1.3332 2.4546 8 6 3.2104 1.4113 3.6508 9 1 4.1580 0.9070 3.4615 10 6 2.5075 0.7434 4.8044 11 1 1.5310 0.3050 4.6611 12 6 3.1111 0.6921 6.0430 13 7 4.3005 1.2255 6.2175 14 14 2.2396 -0.1352 7.4732 15 1 0.9235 -0.6516 7.0190 16 1 3.0682 -1.2616 7.9732 17 1 2.0341 0.8506 8.5647 18 6 3.4735 2.8788 3.9943 19 6 4.2959 3.5246 2.8775 20 6 2.9298 1.3850 -1.2304 21 6 3.9127 0.4373 -1.4463 22 6 4.7046 0.5080 -2.5772 23 6 4.5196 1.5316 -3.4876 24 6 3.5401 2.4823 -3.2690 25 6 2.7454 2.4091 -2.1404 26 1 -0.5401 0.9353 0.0004 27 1 -0.5401 -0.9354 -0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.4064 1.2442 2.5435 30 1 4.7254 1.1891 7.0888 31 1 4.0247 2.9390 4.9328 32 1 2.5238 3.4039 4.0965 33 1 3.7447 3.4643 1.9390 34 1 5.2456 2.9994 2.7754 35 1 4.4830 4.5703 3.1221 36 1 4.0600 -0.3602 -0.7330 37 1 5.4696 -0.2349 -2.7481 38 1 5.1400 1.5884 -4.3698 39 1 3.3958 3.2823 -3.9801 40 1 1.9799 3.1516 -1.9699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123786755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = -19.592592 kcal Electronic energy + Delta-G solvation = -20995.754175 eV Core-core repulsion = 17967.742287 eV Total energy + Delta-G solvation = -3028.011889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24939 -39.62272 -36.97879 -36.00321 -34.21643 -32.66392 -32.04820 -31.70057 -29.23203 -27.73198 -25.00321 -23.57242 -22.92960 -22.00911 -21.21666 -20.56459 -18.90323 -17.89289 -17.44690 -17.15438 -16.38886 -16.24082 -15.96622 -15.63367 -15.16336 -14.65113 -14.56115 -14.40369 -14.13532 -13.62163 -13.55605 -13.30118 -13.22459 -13.12589 -12.84964 -12.70271 -12.29473 -12.15065 -12.05402 -11.92281 -11.73197 -11.58165 -11.04959 -10.95161 -10.54303 -10.11874 -9.73342 -9.56471 -9.56080 -8.15676 -6.32868 0.46722 0.58288 1.33565 1.43529 1.44907 1.56557 1.92480 2.37034 2.65771 3.03679 3.14077 3.80977 3.84636 4.04775 4.20599 4.23057 4.24569 4.32619 4.48639 4.56761 4.57795 4.69552 4.76695 4.81441 5.04436 5.06154 5.13760 5.21110 5.25962 5.44337 5.56771 5.60117 5.64529 5.66702 5.68565 5.71549 5.79041 5.82787 5.95518 6.17683 6.18555 6.76039 7.03758 7.34717 7.63060 8.89819 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.004748 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.962998 B = 5895.221470 C = 6390.250044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.164 4.164 3 C -0.032 4.032 4 H 0.123 0.877 5 C 0.506 3.494 6 O -0.577 6.577 7 N -0.702 5.702 8 C 0.280 3.720 9 H -0.005 1.005 10 C -0.546 4.546 11 H 0.070 0.930 12 C 0.016 3.984 13 N -0.916 5.916 14 Si 0.969 3.031 15 H -0.260 1.260 16 H -0.285 1.285 17 H -0.279 1.279 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.072 4.072 21 C -0.105 4.105 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.123 4.123 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.401 0.599 30 H 0.264 0.736 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.023 0.977 35 H 0.044 0.956 36 H 0.097 0.903 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.731 0.917 -16.488 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.182 4.182 3 C -0.053 4.053 4 H 0.141 0.859 5 C 0.293 3.707 6 O -0.457 6.457 7 N -0.350 5.350 8 C 0.176 3.824 9 H 0.013 0.987 10 C -0.584 4.584 11 H 0.089 0.911 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.794 3.206 15 H -0.184 1.184 16 H -0.211 1.211 17 H -0.204 1.204 18 C -0.159 4.159 19 C -0.179 4.179 20 C -0.072 4.072 21 C -0.123 4.123 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.141 4.141 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.236 0.764 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.149 0.851 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.742 1.022 -16.400 17.761 hybrid contribution -0.125 -0.623 1.264 1.415 sum -6.867 0.399 -15.136 16.626 Atomic orbital electron populations 1.24125 0.94516 1.03812 0.96823 1.22472 0.96511 0.95714 1.03539 1.19482 0.96422 0.99613 0.89781 0.85881 1.20832 0.88666 0.75968 0.85258 1.90672 1.16761 1.51161 1.87145 1.46204 1.11154 1.72079 1.05604 1.18330 0.89662 0.92777 0.81601 0.98688 1.21609 1.04621 1.37413 0.94735 0.91139 1.25760 0.95474 0.95774 1.01418 1.70061 1.15799 1.45150 1.24418 0.85344 0.78771 0.77927 0.78579 1.18402 1.21102 1.20436 1.21778 0.98349 0.96689 0.99121 1.21660 0.99193 0.98462 0.98569 1.19397 0.96722 0.96180 0.94943 1.20949 0.95637 0.98846 0.96887 1.21347 0.99676 0.99829 0.94551 1.21455 0.98597 0.94509 0.99840 1.21430 0.95656 0.99613 0.97719 1.21290 1.00749 0.97428 0.94589 0.86448 0.86374 0.88135 0.76433 0.92667 0.91118 0.94006 0.93755 0.95802 0.93675 0.88476 0.85092 0.83652 0.83298 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 14.32 67.79 0.97 -2.02 16 2 C -0.16 -4.16 8.19 25.66 0.21 -3.95 16 3 C -0.03 -0.92 2.67 -13.03 -0.03 -0.96 16 4 H 0.12 2.92 7.52 -2.39 -0.02 2.90 16 5 C 0.51 20.07 5.58 87.66 0.49 20.55 16 6 O -0.58 -27.63 12.23 -3.03 -0.04 -27.67 16 7 N -0.70 -29.08 4.92 -446.11 -2.20 -31.27 16 8 C 0.28 14.44 2.24 44.24 0.10 14.54 16 9 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 10 C -0.55 -28.95 8.73 25.60 0.22 -28.73 16 11 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 12 C 0.02 0.85 5.29 84.65 0.45 1.29 16 13 N -0.92 -52.73 11.30 21.45 0.24 -52.49 16 14 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 15 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 18 C -0.12 -6.00 5.45 30.59 0.17 -5.83 16 19 C -0.12 -5.59 8.52 71.98 0.61 -4.98 16 20 C -0.07 -2.13 4.39 -19.87 -0.09 -2.22 16 21 C -0.10 -3.32 8.03 22.27 0.18 -3.14 16 22 C -0.14 -3.62 10.05 22.27 0.22 -3.40 16 23 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 24 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 25 C -0.12 -3.01 9.67 22.27 0.22 -2.80 16 26 H 0.12 1.81 7.83 -2.91 -0.02 1.79 16 27 H 0.12 1.90 8.06 -2.91 -0.02 1.87 16 28 H 0.10 2.77 8.05 -2.91 -0.02 2.75 16 29 H 0.40 14.30 8.42 -92.71 -0.78 13.52 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.07 3.95 5.96 -2.39 -0.01 3.93 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.96 5.65 -2.39 -0.01 1.95 16 34 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 35 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.10 3.38 7.97 -2.91 -0.02 3.35 16 37 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.14 2.71 7.95 -2.91 -0.02 2.68 16 Total: -1.00 -67.36 331.84 4.44 -62.92 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.24 Total: 31.01 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 4.16 Total: -26.70 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.95 Total: -83.76 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.04 Total: -27.67 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -67.36 4.44 -62.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123786755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.330 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds