Wall clock time and date at job start Mon Mar 30 2020 02:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 H 1.09001 * 109.47403 * 0.02562 * 3 2 1 5 5 C 1.50701 * 109.46969 * 119.99927 * 3 2 1 6 6 O 1.21286 * 119.99553 * 120.00274 * 5 3 2 7 7 N 1.34774 * 120.00285 * 299.99600 * 5 3 2 8 8 C 1.46496 * 120.00160 * 179.97438 * 7 5 3 9 9 H 1.09009 * 109.47139 * 35.00397 * 8 7 5 10 10 C 1.50697 * 109.47279 * 155.00200 * 8 7 5 11 11 H 1.07998 * 120.00069 * 0.02562 * 10 8 7 12 12 C 1.37873 * 120.00111 * 179.97438 * 10 8 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 8 14 14 Si 1.86809 * 120.00084 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46853 * 59.99785 * 14 12 10 16 16 H 1.48493 * 109.47089 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46694 * 300.00310 * 14 12 10 18 18 C 1.53003 * 109.47275 * 275.00594 * 8 7 5 19 19 C 1.52992 * 109.47276 * 64.99937 * 18 8 7 20 20 C 1.50699 * 109.46971 * 239.99961 * 3 2 1 21 21 C 1.38237 * 120.00058 * 299.72510 * 20 3 2 22 22 C 1.38240 * 119.99733 * 179.78867 * 21 20 3 23 23 C 1.38235 * 119.99945 * 0.44185 * 22 21 20 24 24 C 1.38237 * 120.00317 * 359.81416 * 23 22 21 25 25 C 1.38231 * 119.99752 * 359.97438 * 24 23 22 26 26 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 28 28 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 29 29 H 0.96995 * 119.99766 * 0.02562 * 7 5 3 30 30 H 0.97006 * 120.00134 * 180.02562 * 13 12 10 31 31 H 1.09005 * 109.46844 * 185.00258 * 18 8 7 32 32 H 1.09002 * 109.46861 * 304.99950 * 18 8 7 33 33 H 1.09005 * 109.47445 * 299.99952 * 19 18 8 34 34 H 1.09004 * 109.47553 * 59.99827 * 19 18 8 35 35 H 1.09000 * 109.47642 * 180.02562 * 19 18 8 36 36 H 1.07996 * 120.00093 * 0.02562 * 21 20 3 37 37 H 1.07998 * 119.99494 * 180.27405 * 22 21 20 38 38 H 1.08004 * 119.99327 * 179.83434 * 23 22 21 39 39 H 1.07992 * 119.99728 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.99814 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9299 1.3848 1.2305 6 8 4.1325 1.4957 1.1191 7 7 2.3684 1.3332 2.4546 8 6 3.2106 1.4102 3.6507 9 1 4.0502 2.0792 3.4615 10 6 2.3977 1.9384 4.8044 11 1 1.3575 2.1911 4.6611 12 6 2.9816 2.0981 6.0432 13 7 4.2481 1.7900 6.2179 14 14 1.9736 2.7523 7.4735 15 1 0.8298 1.8407 7.7308 16 1 2.8274 2.8304 8.6859 17 1 1.4624 4.1062 7.1405 18 6 3.7374 0.0154 3.9943 19 6 4.6639 -0.4693 2.8774 20 6 2.9299 1.3848 -1.2305 21 6 3.9128 0.4371 -1.4463 22 6 4.7047 0.5078 -2.5773 23 6 4.5196 1.5315 -3.4877 24 6 3.5402 2.4822 -3.2691 25 6 2.7455 2.4090 -2.1405 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9352 -0.0044 28 1 1.8499 -0.9354 0.0004 29 1 1.4066 1.2443 2.5436 30 1 4.6588 1.9020 7.0896 31 1 4.2903 0.0568 4.9328 32 1 2.8996 -0.6744 4.0963 33 1 4.1109 -0.5107 1.9389 34 1 5.5017 0.2205 2.7753 35 1 5.0388 -1.4631 3.1219 36 1 4.0596 -0.3607 -0.7334 37 1 5.4696 -0.2351 -2.7481 38 1 5.1401 1.5882 -4.3699 39 1 3.3960 3.2821 -3.9802 40 1 1.9801 3.1516 -1.9699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123786756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:11 Heat of formation + Delta-G solvation = -2.918352 kcal Electronic energy + Delta-G solvation = -21039.216296 eV Core-core repulsion = 18011.927457 eV Total energy + Delta-G solvation = -3027.288839 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91493 -38.32795 -35.28091 -34.70657 -32.29495 -31.05272 -30.85631 -30.68765 -27.50877 -26.30511 -23.09000 -22.54508 -21.65283 -20.69487 -19.59379 -19.16106 -17.19746 -16.83891 -15.83843 -15.37113 -15.13771 -14.94169 -14.37411 -14.26672 -13.92761 -13.36993 -13.21413 -12.88768 -12.67239 -12.53310 -12.09012 -11.93663 -11.47738 -11.25191 -11.22838 -11.03848 -10.92102 -10.82612 -10.69395 -10.31895 -10.15430 -9.77913 -9.59848 -9.03827 -8.84891 -8.64753 -8.52772 -8.46146 -7.78100 -6.11202 -4.20652 1.48828 1.60095 2.28440 3.25730 3.31215 3.32165 3.42990 3.88292 4.21382 4.42133 4.90526 4.91608 5.05816 5.14121 5.18800 5.20075 5.27250 5.52268 5.65664 5.68489 5.77163 5.92904 6.12159 6.21291 6.39679 6.46323 6.57193 6.59118 6.65746 6.67480 6.68747 6.83071 7.04962 7.16125 7.21325 7.38512 7.48609 7.63372 7.75480 7.92037 8.19684 8.70401 8.79341 9.17159 9.46950 10.93991 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025596 B = 0.004647 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.669770 B = 6023.960737 C = 6292.250101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.135 4.135 3 C -0.048 4.048 4 H 0.100 0.900 5 C 0.509 3.491 6 O -0.538 6.538 7 N -0.705 5.705 8 C 0.271 3.729 9 H 0.048 0.952 10 C -0.534 4.534 11 H 0.060 0.940 12 C 0.067 3.933 13 N -0.882 5.882 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.127 4.127 19 C -0.136 4.136 20 C -0.052 4.052 21 C -0.079 4.079 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.114 4.114 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.388 0.612 30 H 0.265 0.735 31 H 0.098 0.902 32 H 0.030 0.970 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.021 0.979 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.109 -2.782 -15.151 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.153 4.153 3 C -0.070 4.070 4 H 0.118 0.882 5 C 0.293 3.707 6 O -0.416 6.416 7 N -0.352 5.352 8 C 0.170 3.830 9 H 0.066 0.934 10 C -0.573 4.573 11 H 0.078 0.922 12 C -0.136 4.136 13 N -0.520 5.520 14 Si 0.728 3.272 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.166 4.166 19 C -0.194 4.194 20 C -0.052 4.052 21 C -0.097 4.097 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.132 4.132 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.220 0.780 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.071 -2.694 -15.032 15.805 hybrid contribution -0.962 0.304 0.929 1.372 sum -5.034 -2.390 -14.103 15.164 Atomic orbital electron populations 1.23850 0.95485 1.02111 1.00746 1.22621 0.95726 0.96948 1.00007 1.19598 0.96981 0.97804 0.92580 0.88175 1.19976 0.88550 0.77749 0.84409 1.90695 1.14553 1.49851 1.86478 1.46446 1.10895 1.71608 1.06247 1.18767 0.90569 0.93678 0.80036 0.93378 1.21200 0.97264 1.44530 0.94282 0.92204 1.24876 0.95002 0.95097 0.98630 1.69887 1.10989 1.47128 1.23972 0.86532 0.79885 0.79447 0.81376 1.20170 1.21140 1.20210 1.21924 0.97698 0.97063 0.99872 1.21837 1.00241 0.98301 0.98997 1.19249 0.96318 0.95394 0.94246 1.20930 0.94080 0.98536 0.96150 1.21093 0.99588 0.98775 0.94746 1.21071 0.98462 0.95363 0.99444 1.21003 0.96553 0.99151 0.97732 1.20979 0.99982 0.97704 0.94557 0.88334 0.88043 0.86896 0.78006 0.92534 0.88355 0.95098 0.94296 0.93169 0.95964 0.86252 0.86357 0.86549 0.86409 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 14.32 29.01 0.42 -1.58 16 2 C -0.13 -1.74 8.19 -36.03 -0.30 -2.03 16 3 C -0.05 -0.72 2.67 -94.08 -0.25 -0.97 16 4 H 0.10 1.33 7.52 -51.93 -0.39 0.93 16 5 C 0.51 9.91 5.58 -10.99 -0.06 9.85 16 6 O -0.54 -12.32 12.23 5.55 0.07 -12.25 16 7 N -0.70 -14.45 4.92 -54.93 -0.27 -14.72 16 8 C 0.27 6.78 2.24 -69.08 -0.15 6.63 16 9 H 0.05 1.40 7.58 -51.92 -0.39 1.01 16 10 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 13 N -0.88 -24.70 11.29 55.43 0.63 -24.07 16 14 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 19 C -0.14 -3.02 8.51 37.15 0.32 -2.71 16 20 C -0.05 -0.78 4.39 -104.62 -0.46 -1.23 16 21 C -0.08 -1.20 8.03 -39.58 -0.32 -1.52 16 22 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 23 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 24 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 25 C -0.11 -1.53 9.67 -39.58 -0.38 -1.91 16 26 H 0.10 0.96 7.83 -52.48 -0.41 0.55 16 27 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.11 1.47 8.05 -52.49 -0.42 1.04 16 29 H 0.39 7.06 8.43 -40.82 -0.34 6.72 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 34 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.12 1.87 7.97 -52.49 -0.42 1.45 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.35 7.95 -52.49 -0.42 0.93 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -29.89 331.84 -8.41 -38.29 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.88 Total: 9.45 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -2.92 Total: -17.24 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.36 Total: -38.79 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.07 Total: -12.25 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.89 -8.41 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123786756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.374 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds