Wall clock time and date at job start Mon Mar 30 2020 02:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 H 1.09001 * 109.47403 * 0.02562 * 3 2 1 5 5 C 1.50701 * 109.46969 * 119.99927 * 3 2 1 6 6 O 1.21286 * 119.99553 * 120.00274 * 5 3 2 7 7 N 1.34774 * 120.00285 * 299.99600 * 5 3 2 8 8 C 1.46496 * 120.00160 * 179.97438 * 7 5 3 9 9 H 1.09009 * 109.47139 * 35.00397 * 8 7 5 10 10 C 1.50697 * 109.47279 * 155.00200 * 8 7 5 11 11 H 1.07998 * 120.00069 * 0.02562 * 10 8 7 12 12 C 1.37873 * 120.00111 * 179.97438 * 10 8 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 8 14 14 Si 1.86809 * 120.00084 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46853 * 59.99785 * 14 12 10 16 16 H 1.48493 * 109.47089 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46694 * 300.00310 * 14 12 10 18 18 C 1.53003 * 109.47275 * 275.00594 * 8 7 5 19 19 C 1.52992 * 109.47276 * 64.99937 * 18 8 7 20 20 C 1.50699 * 109.46971 * 239.99961 * 3 2 1 21 21 C 1.38237 * 120.00058 * 299.72510 * 20 3 2 22 22 C 1.38240 * 119.99733 * 179.78867 * 21 20 3 23 23 C 1.38235 * 119.99945 * 0.44185 * 22 21 20 24 24 C 1.38237 * 120.00317 * 359.81416 * 23 22 21 25 25 C 1.38231 * 119.99752 * 359.97438 * 24 23 22 26 26 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 28 28 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 29 29 H 0.96995 * 119.99766 * 0.02562 * 7 5 3 30 30 H 0.97006 * 120.00134 * 180.02562 * 13 12 10 31 31 H 1.09005 * 109.46844 * 185.00258 * 18 8 7 32 32 H 1.09002 * 109.46861 * 304.99950 * 18 8 7 33 33 H 1.09005 * 109.47445 * 299.99952 * 19 18 8 34 34 H 1.09004 * 109.47553 * 59.99827 * 19 18 8 35 35 H 1.09000 * 109.47642 * 180.02562 * 19 18 8 36 36 H 1.07996 * 120.00093 * 0.02562 * 21 20 3 37 37 H 1.07998 * 119.99494 * 180.27405 * 22 21 20 38 38 H 1.08004 * 119.99327 * 179.83434 * 23 22 21 39 39 H 1.07992 * 119.99728 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.99814 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9299 1.3848 1.2305 6 8 4.1325 1.4957 1.1191 7 7 2.3684 1.3332 2.4546 8 6 3.2106 1.4102 3.6507 9 1 4.0502 2.0792 3.4615 10 6 2.3977 1.9384 4.8044 11 1 1.3575 2.1911 4.6611 12 6 2.9816 2.0981 6.0432 13 7 4.2481 1.7900 6.2179 14 14 1.9736 2.7523 7.4735 15 1 0.8298 1.8407 7.7308 16 1 2.8274 2.8304 8.6859 17 1 1.4624 4.1062 7.1405 18 6 3.7374 0.0154 3.9943 19 6 4.6639 -0.4693 2.8774 20 6 2.9299 1.3848 -1.2305 21 6 3.9128 0.4371 -1.4463 22 6 4.7047 0.5078 -2.5773 23 6 4.5196 1.5315 -3.4877 24 6 3.5402 2.4822 -3.2691 25 6 2.7455 2.4090 -2.1405 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5400 -0.9352 -0.0044 28 1 1.8499 -0.9354 0.0004 29 1 1.4066 1.2443 2.5436 30 1 4.6588 1.9020 7.0896 31 1 4.2903 0.0568 4.9328 32 1 2.8996 -0.6744 4.0963 33 1 4.1109 -0.5107 1.9389 34 1 5.5017 0.2205 2.7753 35 1 5.0388 -1.4631 3.1219 36 1 4.0596 -0.3607 -0.7334 37 1 5.4696 -0.2351 -2.7481 38 1 5.1401 1.5882 -4.3699 39 1 3.3960 3.2821 -3.9802 40 1 1.9801 3.1516 -1.9699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123786756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:11 Heat of formation + Delta-G solvation = -19.539831 kcal Electronic energy + Delta-G solvation = -21039.937057 eV Core-core repulsion = 18011.927457 eV Total energy + Delta-G solvation = -3028.009601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25734 -39.61478 -36.96899 -35.99641 -34.21217 -32.68464 -32.04326 -31.69780 -29.21210 -27.73624 -25.00542 -23.56000 -22.92875 -22.02077 -21.22177 -20.55915 -18.87625 -17.92158 -17.44832 -17.11458 -16.39082 -16.23372 -15.99262 -15.59416 -15.19721 -14.70958 -14.59945 -14.26878 -14.04967 -13.78960 -13.53368 -13.26916 -13.19625 -13.10474 -12.89414 -12.65067 -12.28372 -12.17567 -12.06547 -11.91960 -11.72818 -11.57049 -11.08529 -10.94889 -10.53070 -10.09669 -9.72170 -9.57809 -9.56032 -8.15056 -6.32616 0.46772 0.58499 1.34193 1.44939 1.46711 1.54466 1.92414 2.37229 2.65962 3.04012 3.14206 3.81048 3.84464 4.04927 4.20767 4.23190 4.25451 4.32393 4.48966 4.55756 4.59340 4.69740 4.76336 4.81798 5.04884 5.06353 5.14172 5.21196 5.26130 5.44362 5.56777 5.60326 5.64330 5.66842 5.69077 5.71991 5.79475 5.82412 5.95773 6.17661 6.18782 6.75656 7.03864 7.34871 7.63058 8.89948 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025596 B = 0.004647 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.669770 B = 6023.960737 C = 6292.250101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.162 4.162 3 C -0.033 4.033 4 H 0.120 0.880 5 C 0.506 3.494 6 O -0.577 6.577 7 N -0.702 5.702 8 C 0.280 3.720 9 H -0.004 1.004 10 C -0.549 4.549 11 H 0.071 0.929 12 C 0.016 3.984 13 N -0.915 5.915 14 Si 0.969 3.031 15 H -0.264 1.264 16 H -0.287 1.287 17 H -0.271 1.271 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.073 4.073 21 C -0.103 4.103 22 C -0.136 4.136 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.125 4.125 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.401 0.599 30 H 0.264 0.736 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.023 0.977 35 H 0.043 0.957 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -2.470 -16.424 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C -0.054 4.054 4 H 0.138 0.862 5 C 0.293 3.707 6 O -0.457 6.457 7 N -0.350 5.350 8 C 0.177 3.823 9 H 0.013 0.987 10 C -0.587 4.587 11 H 0.089 0.911 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.794 3.206 15 H -0.189 1.189 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.158 4.158 19 C -0.179 4.179 20 C -0.073 4.073 21 C -0.121 4.121 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.143 4.143 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.122 0.878 29 H 0.236 0.764 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.119 0.881 37 H 0.151 0.849 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.337 -2.392 -16.332 17.681 hybrid contribution -0.251 0.213 1.238 1.281 sum -6.588 -2.179 -15.094 16.613 Atomic orbital electron populations 1.24133 0.94579 1.03772 0.96875 1.22466 0.96434 0.95631 1.03485 1.19476 0.96424 0.99702 0.89788 0.86227 1.20830 0.88640 0.75998 0.85250 1.90673 1.16711 1.51207 1.87149 1.46202 1.11123 1.72109 1.05608 1.18325 0.89609 0.92823 0.81579 0.98660 1.21557 0.97832 1.44503 0.94792 0.91114 1.25761 0.95962 0.95249 1.01412 1.70049 1.12712 1.48122 1.24490 0.85447 0.78449 0.78997 0.77739 1.18876 1.21254 1.19659 1.21765 0.97897 0.97048 0.99125 1.21663 0.98971 0.98607 0.98640 1.19403 0.96813 0.96209 0.94883 1.20958 0.95448 0.98814 0.96885 1.21361 0.99688 0.99787 0.94528 1.21457 0.98544 0.94533 0.99896 1.21418 0.95733 0.99652 0.97705 1.21291 1.00783 0.97491 0.94704 0.86726 0.86198 0.87751 0.76439 0.92653 0.91144 0.94186 0.93622 0.95760 0.93774 0.88096 0.84946 0.83662 0.83422 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 14.32 67.78 0.97 -1.95 16 2 C -0.16 -3.97 8.19 25.64 0.21 -3.76 16 3 C -0.03 -0.95 2.67 -13.03 -0.03 -0.99 16 4 H 0.12 2.94 7.52 -2.39 -0.02 2.92 16 5 C 0.51 20.06 5.58 87.66 0.49 20.55 16 6 O -0.58 -27.59 12.23 -3.05 -0.04 -27.63 16 7 N -0.70 -29.09 4.92 -446.09 -2.20 -31.28 16 8 C 0.28 14.47 2.24 44.25 0.10 14.57 16 9 H 0.00 -0.28 7.58 -2.38 -0.02 -0.30 16 10 C -0.55 -29.11 8.73 25.60 0.22 -28.89 16 11 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 12 C 0.02 0.88 5.29 84.65 0.45 1.32 16 13 N -0.92 -52.72 11.29 21.45 0.24 -52.47 16 14 Si 0.97 42.07 29.54 68.60 2.03 44.10 16 15 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 16 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 18 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 19 C -0.12 -5.56 8.51 71.98 0.61 -4.95 16 20 C -0.07 -2.15 4.39 -19.86 -0.09 -2.24 16 21 C -0.10 -3.18 8.03 22.27 0.18 -3.01 16 22 C -0.14 -3.55 10.05 22.27 0.22 -3.33 16 23 C -0.13 -2.82 10.05 22.27 0.22 -2.59 16 24 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 25 C -0.12 -3.13 9.67 22.27 0.22 -2.92 16 26 H 0.11 1.78 7.83 -2.91 -0.02 1.76 16 27 H 0.12 1.82 8.06 -2.91 -0.02 1.80 16 28 H 0.10 2.71 8.05 -2.91 -0.02 2.68 16 29 H 0.40 14.31 8.43 -92.71 -0.78 13.53 16 30 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 31 H 0.07 3.93 5.95 -2.38 -0.01 3.92 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 2.00 5.65 -2.38 -0.01 1.98 16 34 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.10 3.37 7.97 -2.91 -0.02 3.35 16 37 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.14 2.79 7.95 -2.91 -0.02 2.77 16 Total: -1.00 -67.08 331.84 4.44 -62.64 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.24 Total: 31.16 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 4.16 Total: -26.52 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.95 Total: -83.76 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.04 Total: -27.63 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -67.08 4.44 -62.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123786756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.102 kcal (2) G-P(sol) polarization free energy of solvation -67.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds