Wall clock time and date at job start Mon Mar 30 2020 01:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50694 * 120.00307 * 2 1 4 4 C 1.31004 * 120.00007 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00015 * 353.97953 * 4 2 1 6 6 N 1.46499 * 109.47439 * 236.27115 * 5 4 2 7 7 C 1.34779 * 119.99836 * 179.97438 * 6 5 4 8 8 O 1.21270 * 120.00331 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99503 * 180.02562 * 7 6 5 10 10 H 1.08995 * 109.47523 * 59.99999 * 9 7 6 11 11 C 1.50708 * 109.47079 * 299.99885 * 9 7 6 12 12 H 1.07991 * 119.99833 * 124.54360 * 11 9 7 13 13 C 1.37877 * 119.99669 * 304.26756 * 11 9 7 14 14 N 1.31516 * 120.00339 * 6.67914 * 13 11 9 15 15 Si 1.86802 * 119.99733 * 186.67055 * 13 11 9 16 16 H 1.48504 * 109.47066 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46930 * 120.00233 * 15 13 11 18 18 H 1.48498 * 109.47468 * 240.00323 * 15 13 11 19 19 C 1.50701 * 109.46800 * 180.02562 * 9 7 6 20 20 C 1.38231 * 120.00040 * 314.45034 * 19 9 7 21 21 C 1.38235 * 120.00020 * 179.81462 * 20 19 9 22 22 C 1.38231 * 120.00003 * 0.39003 * 21 20 19 23 23 C 1.38230 * 120.00112 * 359.86551 * 22 21 20 24 24 C 1.38233 * 119.99985 * 359.94919 * 23 22 21 25 25 H 1.09002 * 109.47424 * 264.47039 * 1 2 3 26 26 H 1.08998 * 109.47043 * 24.46987 * 1 2 3 27 27 H 1.09001 * 109.47221 * 144.46927 * 1 2 3 28 28 H 1.08996 * 109.47272 * 270.00202 * 3 2 1 29 29 H 1.09009 * 109.47062 * 30.00065 * 3 2 1 30 30 H 1.09000 * 109.47659 * 149.99542 * 3 2 1 31 31 H 1.08003 * 120.00268 * 173.98536 * 4 2 1 32 32 H 1.09004 * 109.46960 * 116.26729 * 5 4 2 33 33 H 1.09001 * 109.47043 * 356.27513 * 5 4 2 34 34 H 0.97003 * 120.00216 * 0.02562 * 6 5 4 35 35 H 0.96998 * 119.99685 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.00074 * 359.97438 * 20 19 9 37 37 H 1.08004 * 120.00034 * 180.22671 * 21 20 19 38 38 H 1.08008 * 119.99891 * 179.83489 * 22 21 20 39 39 H 1.08005 * 120.00475 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00223 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4147 -2.4361 0.1358 6 7 1.9392 -3.1827 1.2820 7 6 1.4184 -4.3848 1.5985 8 8 0.5160 -4.8486 0.9344 9 6 1.9577 -5.1525 2.7780 10 1 1.8287 -4.5625 3.6853 11 6 3.4229 -5.4347 2.5663 12 1 4.1450 -5.1245 3.3069 13 6 3.8407 -6.0940 1.4297 14 7 2.9813 -6.3601 0.4704 15 14 5.6275 -6.6092 1.2524 16 1 6.3841 -6.1961 2.4617 17 1 5.7046 -8.0845 1.1008 18 1 6.2142 -5.9571 0.0542 19 6 1.2104 -6.4541 2.9141 20 6 -0.1683 -6.4730 2.8165 21 6 -0.8534 -7.6675 2.9376 22 6 -0.1604 -8.8419 3.1643 23 6 1.2179 -8.8222 3.2672 24 6 1.9033 -7.6283 3.1423 25 1 -0.3634 -0.0990 1.0229 26 1 -0.3633 0.9353 -0.4257 27 1 -0.3634 -0.8363 -0.5972 28 1 2.4421 1.6197 -1.0276 29 1 1.6714 2.0647 0.5139 30 1 3.2129 1.1747 0.5139 31 1 3.2375 -1.1371 -0.0985 32 1 1.5437 -3.0258 -0.7718 33 1 0.3550 -2.2323 0.2891 34 1 2.6608 -2.8115 1.8135 35 1 3.2753 -6.8243 -0.3290 36 1 -0.7100 -5.5550 2.6431 37 1 -1.9304 -7.6829 2.8577 38 1 -0.6960 -9.7748 3.2616 39 1 1.7594 -9.7397 3.4448 40 1 2.9803 -7.6130 3.2223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128080633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:28 Heat of formation + Delta-G solvation = -5.710172 kcal Electronic energy + Delta-G solvation = -20976.442688 eV Core-core repulsion = 17949.032786 eV Total energy + Delta-G solvation = -3027.409902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.92265 -37.59492 -36.44782 -33.55204 -33.09949 -30.80601 -29.68362 -28.76279 -27.70860 -26.94822 -24.17437 -23.12439 -21.25317 -20.44299 -19.18033 -17.80672 -16.69347 -15.87972 -15.36018 -15.09855 -14.80800 -14.62041 -14.02836 -13.84597 -13.58917 -13.57754 -13.06011 -12.57778 -12.40351 -12.33617 -12.18840 -11.94950 -11.84205 -11.60438 -11.35663 -11.17903 -10.96934 -10.72139 -10.63008 -10.42172 -10.01996 -9.66029 -9.34567 -8.81878 -8.65961 -8.15425 -7.80817 -7.67708 -7.39011 -6.12517 -4.25971 2.21118 2.56077 2.60572 3.20458 3.31032 3.32245 4.22047 4.35850 4.65360 4.93789 5.01693 5.04599 5.17631 5.43977 5.51996 5.63156 5.73387 5.79919 5.86160 5.89259 5.98670 6.06156 6.06639 6.23991 6.29727 6.42699 6.63923 6.69306 6.79551 6.83411 6.95140 7.02437 7.14862 7.21900 7.55285 7.63162 7.68768 7.72163 7.81910 8.16989 8.28818 8.68609 8.90627 9.40074 9.81504 10.89432 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.006102 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.083112 B = 4587.304840 C = 5912.517279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.131 4.131 3 C -0.114 4.114 4 C -0.167 4.167 5 C 0.152 3.848 6 N -0.731 5.731 7 C 0.554 3.446 8 O -0.551 6.551 9 C 0.055 3.945 10 H 0.056 0.944 11 C -0.540 4.540 12 H 0.067 0.933 13 C 0.076 3.924 14 N -0.841 5.841 15 Si 0.884 3.116 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.284 1.284 19 C -0.015 4.015 20 C -0.098 4.098 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.075 4.075 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.395 0.605 35 H 0.264 0.736 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 8.541 1.758 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.132 4.132 3 C -0.171 4.171 4 C -0.185 4.185 5 C 0.028 3.972 6 N -0.383 5.383 7 C 0.343 3.657 8 O -0.428 6.428 9 C 0.034 3.966 10 H 0.074 0.926 11 C -0.578 4.578 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.474 5.474 15 Si 0.711 3.289 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.210 1.210 19 C -0.016 4.016 20 C -0.116 4.116 21 C -0.161 4.161 22 C -0.164 4.164 23 C -0.165 4.165 24 C -0.093 4.093 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.911 8.092 1.062 8.665 hybrid contribution 1.496 -0.305 -0.396 1.578 sum -1.415 7.787 0.666 7.943 Atomic orbital electron populations 1.20882 0.92465 1.02074 1.02292 1.21592 0.95810 0.94841 1.00950 1.20809 0.99673 0.94932 1.01711 1.22848 0.99965 0.93799 1.01937 1.20105 0.96627 0.89455 0.91005 1.45721 1.40486 1.20654 1.31454 1.20911 0.79855 0.78514 0.86402 1.90511 1.31500 1.67206 1.53605 1.17890 0.96052 0.90387 0.92287 0.92565 1.20723 0.89936 1.40798 1.06332 0.91508 1.25049 0.97271 0.95254 0.95623 1.70042 1.33621 1.37413 1.06326 0.86656 0.85319 0.78701 0.78208 1.19472 1.20716 1.21049 1.19874 0.91929 0.96078 0.93713 1.21022 0.94693 0.97266 0.98645 1.20848 0.98444 0.93360 1.03493 1.20779 0.94519 0.97058 1.04016 1.20992 0.94177 0.97702 1.03658 1.21170 1.00451 0.91148 0.96555 0.91459 0.92294 0.91285 0.91887 0.91976 0.91899 0.87058 0.92049 0.91999 0.77209 0.92565 0.87247 0.88043 0.88162 0.87986 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.92 36.00 0.32 -1.07 16 2 C -0.13 -1.63 6.05 -101.07 -0.61 -2.24 16 3 C -0.11 -1.14 10.00 36.00 0.36 -0.78 16 4 C -0.17 -2.43 9.21 -36.03 -0.33 -2.76 16 5 C 0.15 2.75 5.75 -5.20 -0.03 2.72 16 6 N -0.73 -14.90 5.45 -61.47 -0.33 -15.24 16 7 C 0.55 13.32 5.28 -10.98 -0.06 13.26 16 8 O -0.55 -14.90 13.75 5.57 0.08 -14.82 16 9 C 0.06 1.31 2.79 -94.07 -0.26 1.05 16 10 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 11 C -0.54 -13.29 7.08 -34.44 -0.24 -13.53 16 12 H 0.07 1.60 7.82 -52.49 -0.41 1.19 16 13 C 0.08 1.94 3.97 -17.82 -0.07 1.87 16 14 N -0.84 -23.24 11.16 55.43 0.62 -22.62 16 15 Si 0.88 19.97 29.54 -169.99 -5.02 14.95 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.01 -0.36 4.64 -104.62 -0.48 -0.85 16 20 C -0.10 -2.25 8.20 -39.59 -0.32 -2.58 16 21 C -0.14 -2.97 10.05 -39.59 -0.40 -3.37 16 22 C -0.15 -2.90 10.05 -39.59 -0.40 -3.30 16 23 C -0.15 -3.10 10.05 -39.59 -0.40 -3.49 16 24 C -0.08 -1.77 8.50 -39.58 -0.34 -2.11 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.14 16 27 H 0.07 0.85 6.67 -51.93 -0.35 0.51 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.54 8.12 -51.92 -0.42 0.12 16 30 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.11 1.57 8.05 -52.48 -0.42 1.15 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.10 5.70 -51.93 -0.30 0.80 16 34 H 0.39 7.40 8.35 -40.82 -0.34 7.06 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.11 2.50 6.87 -52.49 -0.36 2.14 16 37 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 38 H 0.10 1.69 8.06 -52.48 -0.42 1.26 16 39 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 40 H 0.13 3.05 6.13 -52.49 -0.32 2.73 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -29.69 330.68 -8.80 -38.49 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -5.85 Total: 11.43 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -3.27 Total: -17.17 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.28 Total: -37.86 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.08 Total: -14.82 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.69 -8.80 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128080633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.779 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds