Wall clock time and date at job start Mon Mar 30 2020 01:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.50694 * 120.00307 * 2 1 4 4 C 1.31004 * 120.00007 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00015 * 353.97953 * 4 2 1 6 6 N 1.46499 * 109.47439 * 236.27115 * 5 4 2 7 7 C 1.34779 * 119.99836 * 179.97438 * 6 5 4 8 8 O 1.21270 * 120.00331 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99503 * 180.02562 * 7 6 5 10 10 H 1.08995 * 109.47523 * 59.99999 * 9 7 6 11 11 C 1.50708 * 109.47079 * 299.99885 * 9 7 6 12 12 H 1.07991 * 119.99833 * 124.54360 * 11 9 7 13 13 C 1.37877 * 119.99669 * 304.26756 * 11 9 7 14 14 N 1.31516 * 120.00339 * 6.67914 * 13 11 9 15 15 Si 1.86802 * 119.99733 * 186.67055 * 13 11 9 16 16 H 1.48504 * 109.47066 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46930 * 120.00233 * 15 13 11 18 18 H 1.48498 * 109.47468 * 240.00323 * 15 13 11 19 19 C 1.50701 * 109.46800 * 180.02562 * 9 7 6 20 20 C 1.38231 * 120.00040 * 314.45034 * 19 9 7 21 21 C 1.38235 * 120.00020 * 179.81462 * 20 19 9 22 22 C 1.38231 * 120.00003 * 0.39003 * 21 20 19 23 23 C 1.38230 * 120.00112 * 359.86551 * 22 21 20 24 24 C 1.38233 * 119.99985 * 359.94919 * 23 22 21 25 25 H 1.09002 * 109.47424 * 264.47039 * 1 2 3 26 26 H 1.08998 * 109.47043 * 24.46987 * 1 2 3 27 27 H 1.09001 * 109.47221 * 144.46927 * 1 2 3 28 28 H 1.08996 * 109.47272 * 270.00202 * 3 2 1 29 29 H 1.09009 * 109.47062 * 30.00065 * 3 2 1 30 30 H 1.09000 * 109.47659 * 149.99542 * 3 2 1 31 31 H 1.08003 * 120.00268 * 173.98536 * 4 2 1 32 32 H 1.09004 * 109.46960 * 116.26729 * 5 4 2 33 33 H 1.09001 * 109.47043 * 356.27513 * 5 4 2 34 34 H 0.97003 * 120.00216 * 0.02562 * 6 5 4 35 35 H 0.96998 * 119.99685 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.00074 * 359.97438 * 20 19 9 37 37 H 1.08004 * 120.00034 * 180.22671 * 21 20 19 38 38 H 1.08008 * 119.99891 * 179.83489 * 22 21 20 39 39 H 1.08005 * 120.00475 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00223 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4147 -2.4361 0.1358 6 7 1.9392 -3.1827 1.2820 7 6 1.4184 -4.3848 1.5985 8 8 0.5160 -4.8486 0.9344 9 6 1.9577 -5.1525 2.7780 10 1 1.8287 -4.5625 3.6853 11 6 3.4229 -5.4347 2.5663 12 1 4.1450 -5.1245 3.3069 13 6 3.8407 -6.0940 1.4297 14 7 2.9813 -6.3601 0.4704 15 14 5.6275 -6.6092 1.2524 16 1 6.3841 -6.1961 2.4617 17 1 5.7046 -8.0845 1.1008 18 1 6.2142 -5.9571 0.0542 19 6 1.2104 -6.4541 2.9141 20 6 -0.1683 -6.4730 2.8165 21 6 -0.8534 -7.6675 2.9376 22 6 -0.1604 -8.8419 3.1643 23 6 1.2179 -8.8222 3.2672 24 6 1.9033 -7.6283 3.1423 25 1 -0.3634 -0.0990 1.0229 26 1 -0.3633 0.9353 -0.4257 27 1 -0.3634 -0.8363 -0.5972 28 1 2.4421 1.6197 -1.0276 29 1 1.6714 2.0647 0.5139 30 1 3.2129 1.1747 0.5139 31 1 3.2375 -1.1371 -0.0985 32 1 1.5437 -3.0258 -0.7718 33 1 0.3550 -2.2323 0.2891 34 1 2.6608 -2.8115 1.8135 35 1 3.2753 -6.8243 -0.3290 36 1 -0.7100 -5.5550 2.6431 37 1 -1.9304 -7.6829 2.8577 38 1 -0.6960 -9.7748 3.2616 39 1 1.7594 -9.7397 3.4448 40 1 2.9803 -7.6130 3.2223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128080633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:27 Heat of formation + Delta-G solvation = -22.047907 kcal Electronic energy + Delta-G solvation = -20977.151145 eV Core-core repulsion = 17949.032786 eV Total energy + Delta-G solvation = -3028.118359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.70220 -39.21340 -37.73744 -35.45367 -34.68132 -32.65827 -31.37912 -30.11859 -28.78665 -28.47457 -25.93158 -24.56655 -22.96048 -22.14412 -20.96724 -19.10790 -18.43253 -17.47125 -17.03220 -16.74061 -16.64891 -16.05173 -15.67348 -15.33621 -14.99065 -14.78303 -14.54995 -14.21437 -13.98370 -13.96207 -13.64103 -13.23233 -13.15177 -12.98492 -12.80203 -12.76670 -12.49332 -12.39387 -12.27010 -11.77143 -11.75797 -11.43157 -11.16730 -10.70232 -10.21079 -9.78596 -9.45545 -9.39057 -9.11198 -8.09262 -6.26228 0.85976 0.90102 1.11903 1.39343 1.45130 1.53634 2.35026 2.49722 3.00191 3.19432 3.36805 3.85802 4.06152 4.33283 4.34453 4.35371 4.49036 4.50850 4.59270 4.68267 4.71155 4.82646 4.85768 4.95462 4.99981 5.00725 5.10346 5.12677 5.16503 5.21754 5.44911 5.52757 5.70536 5.72462 5.86681 5.88994 5.93124 5.97328 6.08370 6.41253 6.51589 6.76735 7.15269 7.42235 7.98734 8.91574 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.006102 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.083112 B = 4587.304840 C = 5912.517279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C -0.115 4.115 4 C -0.195 4.195 5 C 0.159 3.841 6 N -0.723 5.723 7 C 0.551 3.449 8 O -0.587 6.587 9 C 0.045 3.955 10 H 0.068 0.932 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.040 3.960 14 N -0.876 5.876 15 Si 0.940 3.060 16 H -0.257 1.257 17 H -0.286 1.286 18 H -0.289 1.289 19 C -0.038 4.038 20 C -0.117 4.117 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.098 4.098 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.027 0.973 33 H 0.063 0.937 34 H 0.403 0.597 35 H 0.255 0.745 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 9.217 2.388 9.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C -0.172 4.172 4 C -0.213 4.213 5 C 0.035 3.965 6 N -0.374 5.374 7 C 0.340 3.660 8 O -0.468 6.468 9 C 0.024 3.976 10 H 0.086 0.914 11 C -0.571 4.571 12 H 0.090 0.910 13 C -0.164 4.164 14 N -0.510 5.510 15 Si 0.766 3.234 16 H -0.181 1.181 17 H -0.212 1.212 18 H -0.216 1.216 19 C -0.038 4.038 20 C -0.135 4.135 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.168 4.168 24 C -0.116 4.116 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.237 0.763 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.825 8.807 1.721 9.408 hybrid contribution 1.393 -0.447 -0.553 1.564 sum -1.432 8.360 1.168 8.562 Atomic orbital electron populations 1.20963 0.91906 1.02970 1.02415 1.21973 0.96431 0.95358 0.96748 1.20887 0.99764 0.93544 1.02963 1.22560 0.99945 0.92614 1.06214 1.20063 0.97270 0.90513 0.88613 1.45682 1.40065 1.19858 1.31840 1.20986 0.79518 0.79243 0.86228 1.90473 1.33164 1.68363 1.54762 1.18015 0.95850 0.91001 0.92713 0.91447 1.20923 0.90484 1.39766 1.05946 0.90981 1.25598 1.00217 0.95286 0.95332 1.70211 1.35236 1.38864 1.06702 0.85775 0.81607 0.77784 0.78205 1.18095 1.21240 1.21569 1.19975 0.92642 0.96326 0.94906 1.21074 0.94517 0.98091 0.99841 1.21223 1.00057 0.92802 1.02226 1.21201 0.94212 0.98307 1.02189 1.21336 0.95093 0.97786 1.02616 1.21180 0.99995 0.92172 0.98249 0.91226 0.89637 0.92626 0.90435 0.90107 0.91493 0.86714 0.95438 0.91924 0.76304 0.93547 0.88207 0.85165 0.84237 0.85333 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 8.92 71.23 0.64 -2.07 16 2 C -0.10 -2.41 6.05 -16.49 -0.10 -2.51 16 3 C -0.12 -1.93 10.00 71.23 0.71 -1.22 16 4 C -0.19 -5.62 9.21 25.64 0.24 -5.39 16 5 C 0.16 5.97 5.75 85.63 0.49 6.46 16 6 N -0.72 -30.35 5.45 -466.79 -2.54 -32.90 16 7 C 0.55 27.35 5.28 87.66 0.46 27.81 16 8 O -0.59 -33.03 13.75 -3.00 -0.04 -33.07 16 9 C 0.05 2.21 2.79 -13.03 -0.04 2.17 16 10 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 11 C -0.53 -26.47 7.08 25.60 0.18 -26.29 16 12 H 0.07 3.43 7.82 -2.92 -0.02 3.40 16 13 C 0.04 2.06 3.97 84.65 0.34 2.39 16 14 N -0.88 -49.65 11.16 21.45 0.24 -49.41 16 15 Si 0.94 41.32 29.54 68.60 2.03 43.34 16 16 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 17 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 19 C -0.04 -1.84 4.64 -19.87 -0.09 -1.93 16 20 C -0.12 -5.44 8.20 22.27 0.18 -5.25 16 21 C -0.15 -5.81 10.05 22.27 0.22 -5.59 16 22 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16 23 C -0.15 -6.10 10.05 22.27 0.22 -5.88 16 24 C -0.10 -4.62 8.50 22.27 0.19 -4.43 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 27 H 0.05 1.36 6.67 -2.39 -0.02 1.34 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.10 8.12 -2.38 -0.02 1.08 16 30 H 0.07 1.11 8.06 -2.39 -0.02 1.09 16 31 H 0.11 3.21 8.05 -2.91 -0.02 3.19 16 32 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.06 2.31 5.70 -2.39 -0.01 2.30 16 34 H 0.40 15.33 8.35 -92.71 -0.77 14.56 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.10 4.72 6.87 -2.91 -0.02 4.70 16 37 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.11 5.53 6.13 -2.91 -0.02 5.51 16 Total: -1.00 -65.03 330.68 3.81 -61.22 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.26 Total: 37.61 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 3.87 Total: -26.80 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -2.30 Total: -82.31 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.04 Total: -33.07 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -65.03 3.81 -61.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128080633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.176 kcal (2) G-P(sol) polarization free energy of solvation -65.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds