Wall clock time and date at job start Mon Mar 30 2020 01:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46681 * 2 1 4 4 C 1.53003 * 109.46681 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46834 * 180.02562 * 4 3 2 6 6 C 1.36932 * 119.99813 * 269.49021 * 5 4 3 7 7 H 1.07998 * 120.00322 * 325.90495 * 6 5 4 8 8 C 1.38816 * 119.99727 * 145.90621 * 6 5 4 9 9 N 1.31615 * 119.99953 * 336.77206 * 8 6 5 10 10 Si 1.86797 * 119.99964 * 156.77827 * 8 6 5 11 11 H 1.48507 * 109.47379 * 59.99667 * 10 8 6 12 12 H 1.48504 * 109.47349 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47251 * 299.99726 * 10 8 6 14 14 C 1.46505 * 120.00143 * 89.49306 * 5 4 3 15 15 C 1.50703 * 109.47096 * 89.99568 * 14 5 4 16 16 C 1.38742 * 119.78947 * 89.99945 * 15 14 5 17 17 C 1.37844 * 120.68593 * 180.02562 * 16 15 14 18 18 C 1.38939 * 119.81734 * 359.97438 * 17 16 15 19 19 O 1.34813 * 133.49411 * 180.02562 * 18 17 16 20 20 C 1.34447 * 110.88550 * 179.97438 * 19 18 17 21 21 C 1.33988 * 110.15875 * 359.97438 * 20 19 18 22 22 C 1.40486 * 119.22550 * 0.02562 * 18 17 16 23 23 C 1.36740 * 119.79324 * 270.02502 * 15 14 5 24 24 H 1.08997 * 109.47010 * 60.00182 * 1 2 3 25 25 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47402 * 300.00055 * 1 2 3 27 27 H 1.09000 * 109.47097 * 240.00400 * 2 1 3 28 28 H 1.08997 * 109.47010 * 119.99817 * 2 1 3 29 29 H 1.09000 * 109.47029 * 60.00358 * 3 2 1 30 30 H 1.08997 * 109.47250 * 299.99671 * 3 2 1 31 31 H 1.09000 * 109.47402 * 59.99945 * 4 3 2 32 32 H 1.09007 * 109.47141 * 299.99952 * 4 3 2 33 33 H 0.97007 * 119.99721 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46566 * 330.00189 * 14 5 4 35 35 H 1.08990 * 109.47022 * 209.99595 * 14 5 4 36 36 H 1.08002 * 119.65729 * 359.97438 * 16 15 14 37 37 H 1.08001 * 120.09064 * 179.97438 * 17 16 15 38 38 H 1.08010 * 124.91719 * 179.97438 * 20 19 18 39 39 H 1.08001 * 126.90929 * 180.02562 * 21 20 19 40 40 H 1.07992 * 120.13791 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2968 3.4661 -1.1843 7 1 4.6651 2.9113 -2.0345 8 6 4.0654 4.8305 -1.2933 9 7 3.2216 5.4223 -0.4748 10 14 4.9516 5.8266 -2.6017 11 1 4.6077 5.2959 -3.9454 12 1 4.5330 7.2484 -2.5096 13 1 6.4182 5.7272 -2.3908 14 6 4.2913 3.5178 1.2703 15 6 5.7107 3.2822 1.7184 16 6 6.7128 4.1559 1.3218 17 6 8.0173 3.9577 1.7205 18 6 8.3356 2.8730 2.5283 19 8 9.4865 2.4244 3.0683 20 6 9.2749 1.3100 3.7902 21 6 7.9772 0.9779 3.7570 22 6 7.3165 1.9919 2.9266 23 6 6.0029 2.2084 2.5130 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 3.0596 6.3757 -0.5512 34 1 3.6038 3.1356 2.0249 35 1 4.1255 4.5866 1.1356 36 1 6.4683 4.9997 0.6935 37 1 8.7899 4.6436 1.4057 38 1 10.0401 0.7620 4.3201 39 1 7.5112 0.1335 4.2430 40 1 5.2193 1.5311 2.8190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138824576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:35 Heat of formation + Delta-G solvation = 20.545569 kcal Electronic energy + Delta-G solvation = -20810.588655 eV Core-core repulsion = 17784.317287 eV Total energy + Delta-G solvation = -3026.271367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.24775 -39.40854 -37.57374 -35.49595 -33.63135 -33.30941 -31.87556 -30.20125 -29.29299 -27.36217 -25.52116 -23.79984 -23.03809 -22.14005 -22.07581 -21.44373 -18.74293 -18.28960 -17.79606 -16.96397 -16.70796 -16.31286 -16.06347 -15.51453 -15.27906 -15.03215 -14.81880 -14.43951 -13.95420 -13.76940 -13.50579 -13.41376 -13.23298 -13.13232 -12.78543 -12.60177 -12.44392 -12.19501 -11.98579 -11.85897 -11.80555 -11.70246 -11.53606 -11.25484 -11.05889 -10.51488 -9.33146 -9.07036 -8.59273 -7.82485 -5.37168 0.08870 0.50074 1.44958 1.48316 1.54266 1.55139 1.96480 2.51301 2.82577 3.25641 3.64748 3.81435 3.84241 4.17198 4.19359 4.21118 4.31836 4.43978 4.46192 4.50179 4.58920 4.68079 4.81561 4.84092 4.88924 5.03353 5.07083 5.08113 5.10830 5.19929 5.32312 5.40136 5.42707 5.53815 5.60446 5.60729 5.63672 5.77118 5.82324 5.95329 6.30824 6.48461 7.16855 7.86999 8.38876 9.14753 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.006664 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.751643 B = 4200.933215 C = 6051.862168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.121 4.121 4 C 0.146 3.854 5 N -0.589 5.589 6 C -0.259 4.259 7 H 0.050 0.950 8 C -0.028 4.028 9 N -0.910 5.910 10 Si 0.941 3.059 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.181 3.819 15 C -0.098 4.098 16 C -0.086 4.086 17 C -0.115 4.115 18 C 0.016 3.984 19 O -0.211 6.211 20 C 0.011 3.989 21 C -0.224 4.224 22 C -0.148 4.148 23 C -0.080 4.080 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.252 0.748 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.255 0.745 39 H 0.181 0.819 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.326 -9.698 8.355 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.161 4.161 4 C 0.021 3.979 5 N -0.308 5.308 6 C -0.389 4.389 7 H 0.068 0.932 8 C -0.225 4.225 9 N -0.554 5.554 10 Si 0.770 3.230 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.205 1.205 14 C 0.055 3.945 15 C -0.101 4.101 16 C -0.104 4.104 17 C -0.134 4.134 18 C -0.031 4.031 19 O -0.113 6.113 20 C -0.053 4.053 21 C -0.243 4.243 22 C -0.149 4.149 23 C -0.099 4.099 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.159 0.841 38 H 0.271 0.729 39 H 0.198 0.802 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.486 -9.401 8.293 14.115 hybrid contribution 0.013 0.926 -0.915 1.302 sum 6.499 -8.475 7.378 12.980 Atomic orbital electron populations 1.21738 0.95446 1.01943 1.01286 1.21465 0.96258 0.95642 1.01990 1.21978 0.97959 0.96371 0.99790 1.21031 0.92269 0.85765 0.98817 1.43954 1.74368 1.11047 1.01451 1.19125 1.36770 0.91824 0.91206 0.93212 1.25539 0.97930 0.99157 0.99888 1.70080 1.33717 1.10258 1.41366 0.85753 0.79309 0.77886 0.80078 1.20522 1.21676 1.20485 1.19825 0.88016 1.00650 0.85995 1.20685 0.98990 0.94706 0.95703 1.20842 0.91633 0.99573 0.98402 1.20008 0.96881 0.96784 0.99695 1.19683 0.84281 0.98320 1.00804 1.83959 1.32196 1.39123 1.55993 1.24846 0.98753 0.86356 0.95365 1.22831 0.94144 1.02247 1.05033 1.20333 0.94446 0.97873 1.02217 1.20213 0.94528 0.97218 0.97985 0.93761 0.91153 0.93168 0.92092 0.91280 0.94390 0.95104 0.94430 0.93168 0.93837 0.94517 0.90283 0.86777 0.84104 0.72926 0.80193 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.91 71.98 0.71 -3.06 16 2 C -0.12 -3.36 5.93 30.60 0.18 -3.17 16 3 C -0.12 -4.69 5.54 30.60 0.17 -4.52 16 4 C 0.15 6.09 5.67 86.38 0.49 6.58 16 5 N -0.59 -28.89 2.43 -706.33 -1.72 -30.61 16 6 C -0.26 -14.03 9.48 84.04 0.80 -13.23 16 7 H 0.05 2.75 7.93 -2.91 -0.02 2.73 16 8 C -0.03 -1.50 4.94 84.86 0.42 -1.08 16 9 N -0.91 -51.72 11.34 21.65 0.25 -51.48 16 10 Si 0.94 44.08 29.61 68.60 2.03 46.11 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 C 0.18 8.51 5.41 85.63 0.46 8.97 16 15 C -0.10 -4.13 5.43 -20.09 -0.11 -4.24 16 16 C -0.09 -3.56 9.66 22.30 0.22 -3.35 16 17 C -0.12 -4.20 10.07 22.34 0.23 -3.97 16 18 C 0.02 0.56 7.42 22.99 0.17 0.73 16 19 O -0.21 -6.21 10.58 -8.95 -0.09 -6.30 16 20 C 0.01 0.22 11.96 66.85 0.80 1.02 16 21 C -0.22 -5.50 11.14 23.54 0.26 -5.24 16 22 C -0.15 -5.02 6.40 -20.21 -0.13 -5.15 16 23 C -0.08 -2.97 9.68 22.20 0.21 -2.76 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.57 8.04 -2.39 -0.02 1.55 16 32 H 0.05 1.89 8.06 -2.38 -0.02 1.87 16 33 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 34 H 0.04 1.64 8.01 -2.39 -0.02 1.62 16 35 H 0.08 4.23 5.27 -2.39 -0.01 4.22 16 36 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 37 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.25 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.13 4.29 8.04 -2.91 -0.02 4.26 16 Total: -1.00 -63.72 336.79 6.35 -57.37 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.00 Total: 17.37 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 4.88 Total: -32.46 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -1.47 Total: -82.09 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.09 Total: -6.30 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -63.72 6.35 -57.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138824576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.916 kcal (2) G-P(sol) polarization free energy of solvation -63.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds