Wall clock time and date at job start Mon Mar 30 2020 02:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47260 * 2 1 4 4 N 1.46903 * 109.46906 * 179.61575 * 3 2 1 5 5 C 1.46896 * 111.00348 * 298.09455 * 4 3 2 6 6 C 1.50702 * 109.46973 * 292.96276 * 5 4 3 7 7 H 1.08000 * 120.00204 * 354.96007 * 6 5 4 8 8 C 1.37877 * 120.00119 * 174.95814 * 6 5 4 9 9 N 1.31510 * 119.99825 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00293 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.47035 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47454 * 119.99671 * 10 8 6 13 13 H 1.48504 * 109.47039 * 240.00135 * 10 8 6 14 14 C 1.46903 * 110.99877 * 62.05033 * 4 3 2 15 15 C 1.50697 * 109.47382 * 66.04281 * 14 4 3 16 16 C 1.34004 * 124.92099 * 89.99861 * 15 14 4 17 17 C 1.46779 * 106.18391 * 180.02562 * 16 15 14 18 18 C 1.39410 * 134.37022 * 179.97438 * 17 16 15 19 19 C 1.36733 * 119.71525 * 179.97438 * 18 17 16 20 20 C 1.38741 * 120.42227 * 0.04537 * 19 18 17 21 21 C 1.37851 * 120.68390 * 359.97087 * 20 19 18 22 22 C 1.38941 * 119.81800 * 0.02562 * 21 20 19 23 23 O 1.34453 * 124.92609 * 270.02805 * 15 14 4 24 24 H 1.09000 * 109.47253 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46268 * 299.99587 * 1 2 3 26 26 H 1.08999 * 109.47051 * 59.99667 * 1 2 3 27 27 H 1.08999 * 109.46972 * 240.00248 * 2 1 3 28 28 H 1.08999 * 109.47539 * 120.00126 * 2 1 3 29 29 H 1.08995 * 109.46920 * 59.61536 * 3 2 1 30 30 H 1.08997 * 109.47360 * 299.61399 * 3 2 1 31 31 H 1.09003 * 109.46887 * 52.95863 * 5 4 3 32 32 H 1.08997 * 109.47481 * 172.96222 * 5 4 3 33 33 H 0.97004 * 120.00003 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47075 * 306.03941 * 14 4 3 35 35 H 1.09000 * 109.46864 * 186.04591 * 14 4 3 36 36 H 1.07999 * 126.90564 * 0.02562 * 16 15 14 37 37 H 1.07996 * 120.14040 * 0.02562 * 18 17 16 38 38 H 1.08009 * 119.79068 * 180.02562 * 19 18 17 39 39 H 1.08000 * 119.66269 * 180.02562 * 20 19 18 40 40 H 1.07995 * 120.09303 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 0.0093 5 6 4.0279 0.7993 1.2238 6 6 3.6829 1.6417 2.4248 7 1 3.2055 2.6014 2.2922 8 6 3.9766 1.1873 3.6930 9 7 4.5574 0.0185 3.8545 10 14 3.5483 2.2311 5.1817 11 1 2.9056 3.4927 4.7334 12 1 2.6123 1.4826 6.0584 13 1 4.7871 2.5485 5.9367 14 6 4.0431 0.7969 -1.1974 15 6 3.6922 1.6244 -2.4070 16 6 4.4503 2.6086 -2.9093 17 6 3.7244 3.1307 -4.0733 18 6 3.9722 4.1371 -5.0057 19 6 3.0649 4.3783 -5.9997 20 6 1.9003 3.6290 -6.0850 21 6 1.6381 2.6302 -5.1719 22 6 2.5469 2.3686 -4.1540 23 8 2.5729 1.4827 -3.1383 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6711 1.9583 0.8865 30 1 1.6824 1.9544 -0.8934 31 1 3.5794 -0.1883 1.3318 32 1 5.1107 0.7004 1.1484 33 1 4.7637 -0.3014 4.7468 34 1 3.6094 -0.1979 -1.2995 35 1 5.1269 0.7141 -1.1157 36 1 5.4038 2.9491 -2.5332 37 1 4.8773 4.7230 -4.9436 38 1 3.2558 5.1574 -6.7230 39 1 1.1922 3.8298 -6.8754 40 1 0.7283 2.0531 -5.2470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139065873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:07 Heat of formation + Delta-G solvation = 25.971499 kcal Electronic energy + Delta-G solvation = -20729.653555 eV Core-core repulsion = 17703.617473 eV Total energy + Delta-G solvation = -3026.036081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.27612 -38.04112 -37.28086 -32.99805 -32.83354 -31.92793 -30.35626 -29.89080 -27.18909 -26.13916 -24.15552 -22.73014 -22.14119 -21.69235 -20.90727 -19.32290 -17.23532 -16.66440 -16.25065 -16.10464 -15.34579 -14.97879 -14.70386 -14.35771 -14.09444 -13.72314 -13.53890 -13.13885 -12.87788 -12.55165 -12.21733 -12.10528 -11.99927 -11.62916 -11.36078 -11.16055 -11.01694 -10.89772 -10.79347 -10.70005 -10.52294 -10.02457 -9.97181 -9.74808 -9.26001 -8.56330 -8.46539 -7.99347 -7.27974 -6.05904 -4.06785 0.98832 1.40917 2.55893 2.88960 3.29555 3.37418 3.42594 3.76265 4.40568 4.54122 4.75501 4.91336 5.01156 5.19872 5.29834 5.30036 5.36591 5.43618 5.52543 5.54528 5.70022 5.85348 5.89472 5.92852 5.95094 6.10725 6.27796 6.31456 6.33782 6.41103 6.43912 6.51334 6.61412 6.69499 6.76144 6.93481 7.20378 7.35611 7.39485 7.75626 7.99620 8.10345 8.46401 9.01168 9.57541 11.04748 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025200 B = 0.004247 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.824558 B = 6591.042705 C = 7037.907328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.162 4.162 3 C 0.065 3.935 4 N -0.529 5.529 5 C 0.188 3.812 6 C -0.504 4.504 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.118 3.882 15 C 0.066 3.934 16 C -0.204 4.204 17 C -0.123 4.123 18 C -0.074 4.074 19 C -0.141 4.141 20 C -0.104 4.104 21 C -0.107 4.107 22 C 0.047 3.953 23 O -0.192 6.192 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.007 0.993 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.050 0.950 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 3.873 -17.218 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.201 4.201 3 C -0.063 4.063 4 N -0.253 5.253 5 C 0.064 3.936 6 C -0.543 4.543 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.010 4.010 15 C 0.018 3.982 16 C -0.224 4.224 17 C -0.124 4.124 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.123 4.123 21 C -0.125 4.125 22 C 0.000 4.000 23 O -0.093 6.093 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.120 0.880 36 H 0.175 0.825 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.023 4.049 -16.999 17.932 hybrid contribution -0.330 -0.261 0.893 0.987 sum -4.353 3.788 -16.106 17.109 Atomic orbital electron populations 1.21628 0.96344 1.00707 1.01238 1.22148 0.95844 1.00086 1.02038 1.22076 0.87883 0.94769 1.01562 1.62453 1.07061 1.54279 1.01485 1.19844 0.95223 0.93642 0.84906 1.21142 1.39095 1.04198 0.89832 0.91800 1.24960 0.95365 0.95134 0.99032 1.69958 1.42464 1.18843 1.22549 0.86464 0.78082 0.80451 0.82592 1.19641 1.21118 1.21020 1.20776 1.00942 0.93746 0.85585 1.22590 0.83957 0.98120 0.93487 1.22190 1.03026 0.99777 0.97433 1.20034 0.95637 0.98913 0.97847 1.20278 0.99514 0.96053 0.93415 1.20708 0.94872 1.01015 0.99336 1.20835 0.97661 0.95293 0.98461 1.19911 0.98739 1.00308 0.93542 1.19663 0.97101 0.92017 0.91254 1.84011 1.39907 1.50510 1.34887 0.93560 0.92726 0.93487 0.93028 0.90500 0.89838 0.92943 0.97489 0.95444 0.92966 0.93179 0.87962 0.82487 0.85747 0.85735 0.85203 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.16 -2.96 5.28 -26.73 -0.14 -3.10 16 3 C 0.07 1.30 4.99 -3.82 -0.02 1.28 16 4 N -0.53 -11.15 4.69 -237.52 -1.11 -12.26 16 5 C 0.19 4.67 4.53 -4.98 -0.02 4.65 16 6 C -0.50 -13.77 8.40 -34.44 -0.29 -14.06 16 7 H 0.06 1.76 7.37 -52.49 -0.39 1.37 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 10 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.12 2.09 5.26 -4.98 -0.03 2.06 16 15 C 0.07 1.13 5.81 -35.80 -0.21 0.92 16 16 C -0.20 -3.24 11.01 -37.62 -0.41 -3.65 16 17 C -0.12 -1.86 6.40 -105.16 -0.67 -2.54 16 18 C -0.07 -0.92 10.05 -39.69 -0.40 -1.32 16 19 C -0.14 -1.48 9.98 -39.94 -0.40 -1.88 16 20 C -0.10 -1.08 10.01 -39.54 -0.40 -1.48 16 21 C -0.11 -1.32 10.07 -39.46 -0.40 -1.72 16 22 C 0.05 0.73 7.42 -38.47 -0.29 0.45 16 23 O -0.19 -3.27 9.88 3.91 0.04 -3.23 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.90 6.34 -51.93 -0.33 0.57 16 28 H 0.08 1.60 6.28 -51.93 -0.33 1.27 16 29 H 0.08 1.80 6.98 -51.93 -0.36 1.43 16 30 H 0.05 1.00 6.67 -51.93 -0.35 0.66 16 31 H 0.01 0.19 6.01 -51.93 -0.31 -0.12 16 32 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.05 0.87 6.07 -51.93 -0.32 0.56 16 35 H 0.10 1.70 7.92 -51.93 -0.41 1.29 16 36 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 327.85 15.07 4.94 4.94 Total: -1.00 -29.68 327.85 -9.53 -39.22 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.72 Total: 0.99 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.40 Total: -20.74 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.38 Total: -37.54 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.68 -9.53 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139065873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.189 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds