Wall clock time and date at job start Mon Mar 30 2020 02:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46800 * 2 1 4 4 N 1.46902 * 109.46798 * 179.81935 * 3 2 1 5 5 C 1.46901 * 111.00112 * 298.44577 * 4 3 2 6 6 C 1.50706 * 109.47075 * 293.12342 * 5 4 3 7 7 H 1.07997 * 119.99602 * 354.95585 * 6 5 4 8 8 C 1.37873 * 119.99772 * 174.95680 * 6 5 4 9 9 N 1.31516 * 120.00339 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99898 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46972 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47235 * 119.99835 * 10 8 6 13 13 H 1.48496 * 109.47037 * 240.00098 * 10 8 6 14 14 C 1.46897 * 111.00011 * 62.40018 * 4 3 2 15 15 C 1.50703 * 109.47020 * 66.04265 * 14 4 3 16 16 C 1.33985 * 126.90939 * 260.02093 * 15 14 4 17 17 O 1.34455 * 110.15646 * 179.97438 * 16 15 14 18 18 C 1.34806 * 110.88540 * 0.02562 * 17 16 15 19 19 C 1.38945 * 133.49616 * 180.02562 * 18 17 16 20 20 C 1.37849 * 119.81992 * 179.97438 * 19 18 17 21 21 C 1.38747 * 120.68292 * 0.02562 * 20 19 18 22 22 C 1.36731 * 120.41816 * 359.97438 * 21 20 19 23 23 C 1.39410 * 119.72017 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47538 * 59.99921 * 1 2 3 25 25 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47243 * 299.99572 * 1 2 3 27 27 H 1.08999 * 109.46680 * 240.00301 * 2 1 3 28 28 H 1.09002 * 109.46813 * 119.99907 * 2 1 3 29 29 H 1.09004 * 109.46999 * 59.81976 * 3 2 1 30 30 H 1.08998 * 109.47021 * 299.82113 * 3 2 1 31 31 H 1.08999 * 109.47423 * 53.11890 * 5 4 3 32 32 H 1.08992 * 109.47322 * 173.12258 * 5 4 3 33 33 H 0.97003 * 120.00306 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.46972 * 306.04668 * 14 4 3 35 35 H 1.08995 * 109.47291 * 186.04609 * 14 4 3 36 36 H 1.08008 * 124.92500 * 359.96689 * 16 15 14 37 37 H 1.08000 * 120.09008 * 0.22037 * 19 18 17 38 38 H 1.07998 * 119.65574 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.78869 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.14149 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5090 1.4426 0.0044 5 6 4.0318 0.7906 1.2125 6 6 3.6874 1.6222 2.4212 7 1 3.2075 2.5817 2.2974 8 6 3.9848 1.1579 3.6849 9 7 4.5687 -0.0109 3.8355 10 14 3.5572 2.1883 5.1832 11 1 2.9106 3.4519 4.7467 12 1 2.6248 1.4303 6.0555 13 1 4.7967 2.5022 5.9382 14 6 4.0390 0.8059 -1.2087 15 6 3.6840 1.6423 -2.4111 16 6 2.6811 1.4272 -3.2731 17 8 2.6716 2.3814 -4.2203 18 6 3.6696 3.2656 -4.0217 19 6 4.0851 4.4065 -4.6972 20 6 5.1709 5.1193 -4.2356 21 6 5.8565 4.7094 -3.1011 22 6 5.4639 3.5896 -2.4218 23 6 4.3673 2.8564 -2.8730 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6739 1.9573 0.8884 30 1 1.6792 1.9554 -0.8916 31 1 3.5860 -0.1989 1.3133 32 1 5.1147 0.6949 1.1340 33 1 4.7783 -0.3374 4.7246 34 1 3.6050 -0.1881 -1.3167 35 1 5.1230 0.7226 -1.1313 36 1 1.9816 0.6062 -3.2156 37 1 3.5563 4.7362 -5.5793 38 1 5.4918 6.0055 -4.7629 39 1 6.7050 5.2789 -2.7519 40 1 6.0005 3.2748 -1.5390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140785461.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:41 Heat of formation + Delta-G solvation = 9.284002 kcal Electronic energy + Delta-G solvation = -20932.187545 eV Core-core repulsion = 17905.427840 eV Total energy + Delta-G solvation = -3026.759706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.35959 -39.19067 -38.70378 -34.97497 -34.38659 -33.04911 -31.34757 -30.54201 -29.03036 -27.63575 -25.60616 -24.18521 -23.72262 -23.11260 -21.75907 -20.34834 -18.40817 -18.20769 -17.76192 -17.21099 -16.80046 -16.61276 -16.24325 -15.97664 -15.19249 -15.07454 -14.84140 -14.60698 -14.22397 -13.93189 -13.64298 -13.24604 -13.16558 -12.99420 -12.76200 -12.69998 -12.52438 -12.45048 -12.30465 -12.24793 -11.84257 -11.74857 -11.32298 -11.27699 -10.85596 -10.59146 -9.53429 -9.09175 -8.82444 -8.18615 -6.27653 0.04416 0.46474 1.38596 1.38709 1.41133 1.53033 1.91270 2.40412 2.83390 3.13676 3.45316 3.62295 3.69394 4.02010 4.12336 4.16812 4.19989 4.26052 4.46268 4.52925 4.54688 4.58659 4.65394 4.73123 4.75309 4.88605 5.02457 5.08435 5.14148 5.18699 5.32912 5.34605 5.40811 5.43626 5.52280 5.52719 5.62068 5.68956 5.77750 6.09189 6.25105 6.39150 6.67185 6.88959 7.41592 8.91575 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.005234 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.332601 B = 5348.260105 C = 6322.446163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C 0.073 3.927 4 N -0.540 5.540 5 C 0.206 3.794 6 C -0.515 4.515 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.125 3.875 15 C -0.174 4.174 16 C 0.012 3.988 17 O -0.200 6.200 18 C 0.024 3.976 19 C -0.113 4.113 20 C -0.091 4.091 21 C -0.137 4.137 22 C -0.086 4.086 23 C -0.137 4.137 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.070 0.930 31 H -0.015 1.015 32 H -0.005 1.005 33 H 0.263 0.737 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.234 0.766 37 H 0.155 0.845 38 H 0.171 0.829 39 H 0.149 0.851 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 5.829 -17.038 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C -0.055 4.055 4 N -0.263 5.263 5 C 0.080 3.920 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.192 1.192 12 H -0.203 1.203 13 H -0.204 1.204 14 C -0.003 4.003 15 C -0.175 4.175 16 C -0.053 4.053 17 O -0.101 6.101 18 C -0.022 4.022 19 C -0.132 4.132 20 C -0.108 4.108 21 C -0.155 4.155 22 C -0.105 4.105 23 C -0.138 4.138 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.003 0.997 32 H 0.013 0.987 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.250 0.750 37 H 0.173 0.827 38 H 0.188 0.812 39 H 0.167 0.833 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.237 6.236 -17.113 18.500 hybrid contribution -0.019 -0.927 1.548 1.804 sum -3.256 5.309 -15.566 16.765 Atomic orbital electron populations 1.21616 0.93853 1.01989 1.02021 1.22059 0.97808 0.98578 1.00990 1.21963 0.87126 0.95562 1.00877 1.62185 1.07902 1.54791 1.01389 1.19414 0.93092 0.92450 0.87029 1.21409 1.38592 1.04145 0.91206 0.92712 1.25793 0.95200 0.96213 1.02010 1.70077 1.43434 1.20244 1.23587 0.85445 0.78007 0.78879 0.78976 1.19157 1.20326 1.20437 1.20272 0.99267 0.93904 0.86858 1.21078 0.99247 0.97999 0.99222 1.24181 0.99715 0.93486 0.87911 1.83969 1.45785 1.32934 1.47417 1.20057 0.90140 0.94533 0.97515 1.20322 0.99192 0.92014 1.01638 1.21342 0.93651 0.99938 0.95896 1.21114 1.01616 0.96442 0.96365 1.20498 0.95198 0.95388 0.99377 1.20050 0.99110 0.97418 0.97210 0.91116 0.92008 0.93641 0.91404 0.94383 0.92920 0.91133 0.99739 0.98687 0.92787 0.93180 0.92061 0.74975 0.82702 0.81179 0.83290 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.01 16 2 C -0.16 -5.34 5.28 30.60 0.16 -5.18 16 3 C 0.07 2.83 4.98 86.30 0.43 3.26 16 4 N -0.54 -23.65 4.69 -905.36 -4.24 -27.89 16 5 C 0.21 10.96 4.52 85.56 0.39 11.35 16 6 C -0.52 -29.48 8.40 25.60 0.22 -29.27 16 7 H 0.05 3.16 7.36 -2.91 -0.02 3.13 16 8 C 0.01 0.33 5.46 84.65 0.46 0.79 16 9 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 10 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 C 0.12 4.61 5.31 85.56 0.45 5.06 16 15 C -0.17 -5.67 4.95 -18.60 -0.09 -5.76 16 16 C 0.01 0.33 11.16 66.85 0.75 1.07 16 17 O -0.20 -5.62 10.58 -8.96 -0.09 -5.72 16 18 C 0.02 0.71 7.42 22.99 0.17 0.88 16 19 C -0.11 -2.52 10.07 22.35 0.23 -2.30 16 20 C -0.09 -1.76 10.01 22.30 0.22 -1.54 16 21 C -0.14 -3.24 9.98 22.04 0.22 -3.02 16 22 C -0.09 -2.69 10.05 22.20 0.22 -2.47 16 23 C -0.14 -4.51 6.38 -20.21 -0.13 -4.64 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.07 2.05 6.34 -2.39 -0.02 2.04 16 28 H 0.04 1.61 6.28 -2.39 -0.01 1.59 16 29 H 0.05 2.31 6.98 -2.39 -0.02 2.29 16 30 H 0.07 2.46 6.65 -2.39 -0.02 2.44 16 31 H -0.02 -0.85 6.01 -2.39 -0.01 -0.86 16 32 H 0.00 -0.29 7.91 -2.39 -0.02 -0.31 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.05 1.71 6.08 -2.39 -0.01 1.70 16 35 H 0.06 2.40 7.92 -2.39 -0.02 2.38 16 36 H 0.23 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 40 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -68.00 327.86 3.41 -64.59 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.02 Total: 12.72 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 4.41 Total: -34.79 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -3.96 Total: -83.71 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.09 Total: -5.72 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.00 3.41 -64.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140785461.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.876 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds