Wall clock time and date at job start Mon Mar 30 2020 01:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 C 1.53946 * 113.83923 * 86.35348 * 3 2 1 5 5 N 1.47580 * 86.11779 * 137.96018 * 4 3 2 6 6 C 1.34778 * 134.48857 * 155.35676 * 5 4 3 7 7 O 1.21288 * 119.99695 * 180.02562 * 6 5 4 8 8 C 1.50694 * 120.00157 * 359.97438 * 6 5 4 9 9 H 1.08997 * 109.47388 * 336.14481 * 8 6 5 10 10 C 1.50709 * 109.46921 * 96.14717 * 8 6 5 11 11 H 1.07998 * 119.99476 * 34.04300 * 10 8 6 12 12 C 1.37878 * 119.99680 * 214.04883 * 10 8 6 13 13 N 1.31518 * 119.99544 * 183.47528 * 12 10 8 14 14 Si 1.86796 * 120.00329 * 3.47392 * 12 10 8 15 15 H 1.48498 * 109.47330 * 84.85948 * 14 12 10 16 16 H 1.48502 * 109.47041 * 204.86149 * 14 12 10 17 17 H 1.48500 * 109.46899 * 324.85908 * 14 12 10 18 18 C 1.50704 * 109.47271 * 216.14362 * 8 6 5 19 19 C 1.38241 * 119.99948 * 294.41049 * 18 8 6 20 20 C 1.38229 * 119.99793 * 179.78285 * 19 18 8 21 21 C 1.38241 * 120.00226 * 0.44977 * 20 19 18 22 22 C 1.38234 * 119.99467 * 359.80468 * 21 20 19 23 23 C 1.38228 * 120.00577 * 359.97438 * 22 21 20 24 24 C 1.47576 * 91.01531 * 335.36057 * 5 4 3 25 25 H 1.08996 * 109.47051 * 60.00506 * 1 2 3 26 26 H 1.09006 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47692 * 299.99974 * 1 2 3 28 28 H 1.08997 * 109.47015 * 239.99705 * 2 1 3 29 29 H 1.09002 * 109.46689 * 119.99668 * 2 1 3 30 30 H 1.08997 * 112.94448 * 314.66303 * 3 2 1 31 31 H 1.09007 * 113.76625 * 252.26363 * 4 3 2 32 32 H 1.09004 * 113.77075 * 23.65739 * 4 3 2 33 33 H 0.96991 * 120.00042 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.99982 * 359.97438 * 19 18 8 35 35 H 1.08004 * 120.00109 * 180.27604 * 20 19 18 36 36 H 1.07998 * 120.00248 * 179.83110 * 21 20 19 37 37 H 1.08009 * 119.99498 * 180.02562 * 22 21 20 38 38 H 1.07993 * 120.00543 * 180.02562 * 23 22 21 39 39 H 1.09008 * 113.76528 * 270.33821 * 24 5 4 40 40 H 1.08999 * 113.76900 * 138.94466 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.1629 2.0590 1.4053 5 7 3.4425 2.6247 0.9357 6 6 4.1910 3.6885 1.2886 7 8 5.2312 3.9173 0.7084 8 6 3.7350 4.5942 2.4034 9 1 2.6534 4.5173 2.5146 10 6 4.4029 4.1825 3.6902 11 1 5.4095 3.7916 3.6750 12 6 3.7286 4.3047 4.8866 13 7 4.3347 4.0101 6.0160 14 14 1.9543 4.8887 4.9034 15 1 1.0506 3.7332 4.6723 16 1 1.6474 5.5014 6.2209 17 1 1.7545 5.8958 3.8305 18 6 4.1066 6.0179 2.0778 19 6 5.4372 6.3855 2.0044 20 6 5.7780 7.6904 1.7013 21 6 4.7882 8.6299 1.4808 22 6 3.4577 8.2635 1.5594 23 6 3.1168 6.9576 1.8579 24 6 3.5732 1.5578 -0.0756 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.5163 2.0783 -0.7139 31 1 1.4039 2.8105 1.6233 32 1 2.2739 1.3216 2.2004 33 1 3.8605 4.0964 6.8577 34 1 6.2104 5.6524 2.1808 35 1 6.8176 7.9766 1.6396 36 1 5.0545 9.6501 1.2467 37 1 2.6843 8.9975 1.3866 38 1 2.0773 6.6712 1.9189 39 1 4.0986 0.6732 0.2846 40 1 3.9404 1.9091 -1.0398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141875302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:56 Heat of formation + Delta-G solvation = 11.162065 kcal Electronic energy + Delta-G solvation = -21136.252346 eV Core-core repulsion = 18109.574080 eV Total energy + Delta-G solvation = -3026.678267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93493 -38.58982 -37.03919 -33.56431 -33.16581 -31.49659 -30.10341 -28.83902 -27.30934 -25.91514 -23.96376 -22.92669 -21.82463 -20.84244 -19.99420 -18.31790 -17.14014 -16.32256 -16.05717 -15.54959 -15.14986 -14.66952 -14.42784 -14.09682 -13.78726 -13.36594 -13.12696 -12.78971 -12.67967 -12.46367 -12.37966 -12.10553 -11.93649 -11.84807 -11.54751 -11.16416 -11.00417 -10.94208 -10.80569 -10.48068 -10.34749 -10.18246 -9.92730 -9.56692 -8.83940 -8.70176 -8.14158 -8.08349 -7.79198 -6.26717 -4.29753 2.15515 2.23438 3.13307 3.25606 3.26232 3.38677 3.64471 4.24681 4.41848 4.61795 4.84351 5.02245 5.07861 5.20238 5.31226 5.46214 5.56920 5.58015 5.64803 5.70276 5.73733 5.76808 5.81930 5.86060 5.90700 6.01965 6.06894 6.13780 6.26598 6.32806 6.42371 6.47260 6.54672 6.78656 6.89883 7.19040 7.30660 7.33017 7.63921 7.83336 8.21512 8.39683 8.76693 9.05707 9.30594 10.84691 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.006903 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.426658 B = 4055.455441 C = 4872.600401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.126 4.126 4 C 0.111 3.889 5 N -0.647 5.647 6 C 0.559 3.441 7 O -0.553 6.553 8 C 0.043 3.957 9 H 0.053 0.947 10 C -0.504 4.504 11 H 0.081 0.919 12 C 0.083 3.917 13 N -0.884 5.884 14 Si 0.862 3.138 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.252 1.252 18 C -0.042 4.042 19 C -0.067 4.067 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.134 4.134 23 C -0.132 4.132 24 C 0.108 3.892 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.269 0.731 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 -2.821 -10.352 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.145 4.145 4 C -0.012 4.012 5 N -0.383 5.383 6 C 0.351 3.649 7 O -0.431 6.431 8 C 0.021 3.979 9 H 0.071 0.929 10 C -0.541 4.541 11 H 0.100 0.900 12 C -0.121 4.121 13 N -0.519 5.519 14 Si 0.688 3.312 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.176 1.176 18 C -0.043 4.043 19 C -0.085 4.085 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.150 4.150 24 C -0.015 4.015 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.300 -2.511 -10.369 12.927 hybrid contribution -0.913 0.285 0.445 1.055 sum -8.212 -2.227 -9.924 13.072 Atomic orbital electron populations 1.21755 0.95688 1.01449 1.01990 1.21476 0.96043 0.95334 1.02414 1.23271 0.96089 0.97024 0.98080 1.23182 0.85521 0.96533 0.95976 1.50028 1.24506 1.26060 1.37733 1.21009 0.82235 0.79735 0.81871 1.90572 1.23767 1.73533 1.55183 1.18244 0.97928 0.88038 0.93701 0.92852 1.20481 1.02608 1.43947 0.87099 0.90047 1.24977 0.98056 0.93870 0.95194 1.69860 1.37204 1.47014 0.97856 0.87064 0.85353 0.80173 0.78573 1.19714 1.21026 1.17591 1.20182 0.93316 0.96238 0.94541 1.21009 0.96577 0.95156 0.95740 1.21079 0.98576 0.93869 1.01644 1.20886 0.93199 0.98663 1.03190 1.20876 0.95940 0.95944 1.02436 1.21048 0.98667 0.93624 1.01689 1.23068 0.94929 0.90385 0.93087 0.92818 0.92886 0.92463 0.91593 0.91369 0.88404 0.90672 0.89723 0.92143 0.85741 0.87057 0.87334 0.87301 0.87193 0.90444 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.11 -1.06 5.78 -26.73 -0.15 -1.21 16 3 C -0.13 -1.47 3.83 -89.69 -0.34 -1.81 16 4 C 0.11 1.68 7.91 -2.97 -0.02 1.66 16 5 N -0.65 -12.23 3.61 -178.35 -0.64 -12.88 16 6 C 0.56 12.96 7.02 -10.99 -0.08 12.89 16 7 O -0.55 -14.15 15.82 5.55 0.09 -14.06 16 8 C 0.04 1.01 1.80 -94.07 -0.17 0.85 16 9 H 0.05 1.21 4.47 -51.93 -0.23 0.97 16 10 C -0.50 -13.83 8.24 -34.44 -0.28 -14.11 16 11 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 12 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 13 N -0.88 -25.95 13.96 55.43 0.77 -25.17 16 14 Si 0.86 19.99 26.93 -169.99 -4.58 15.41 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.25 -5.52 5.11 56.52 0.29 -5.23 16 18 C -0.04 -0.96 4.65 -104.62 -0.49 -1.45 16 19 C -0.07 -1.53 8.09 -39.58 -0.32 -1.85 16 20 C -0.13 -2.61 10.05 -39.58 -0.40 -3.00 16 21 C -0.14 -2.52 10.05 -39.58 -0.40 -2.91 16 22 C -0.13 -2.44 10.05 -39.59 -0.40 -2.84 16 23 C -0.13 -2.73 8.85 -39.59 -0.35 -3.08 16 24 C 0.11 1.57 8.40 -2.98 -0.03 1.55 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.64 7.88 -51.93 -0.41 0.24 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 32 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.12 3.04 7.42 -52.49 -0.39 2.65 16 35 H 0.11 1.87 8.06 -52.48 -0.42 1.44 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 38 H 0.11 2.11 7.10 -52.49 -0.37 1.74 16 39 H 0.08 1.05 8.10 -51.92 -0.42 0.63 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 329.85 15.07 4.97 4.97 Total: -1.00 -32.00 329.85 -8.66 -40.67 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.12 Total: 5.10 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -3.16 Total: -14.03 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.13 Total: -38.05 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.58 Total: 15.41 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.00 -8.66 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141875302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.827 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds