Wall clock time and date at job start Mon Mar 30 2020 01:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 C 1.53946 * 113.83923 * 86.35348 * 3 2 1 5 5 N 1.47580 * 86.11779 * 137.96018 * 4 3 2 6 6 C 1.34778 * 134.48857 * 155.35676 * 5 4 3 7 7 O 1.21288 * 119.99695 * 180.02562 * 6 5 4 8 8 C 1.50694 * 120.00157 * 359.97438 * 6 5 4 9 9 H 1.08997 * 109.47388 * 336.14481 * 8 6 5 10 10 C 1.50709 * 109.46921 * 96.14717 * 8 6 5 11 11 H 1.07998 * 119.99476 * 34.04300 * 10 8 6 12 12 C 1.37878 * 119.99680 * 214.04883 * 10 8 6 13 13 N 1.31518 * 119.99544 * 183.47528 * 12 10 8 14 14 Si 1.86796 * 120.00329 * 3.47392 * 12 10 8 15 15 H 1.48498 * 109.47330 * 84.85948 * 14 12 10 16 16 H 1.48502 * 109.47041 * 204.86149 * 14 12 10 17 17 H 1.48500 * 109.46899 * 324.85908 * 14 12 10 18 18 C 1.50704 * 109.47271 * 216.14362 * 8 6 5 19 19 C 1.38241 * 119.99948 * 294.41049 * 18 8 6 20 20 C 1.38229 * 119.99793 * 179.78285 * 19 18 8 21 21 C 1.38241 * 120.00226 * 0.44977 * 20 19 18 22 22 C 1.38234 * 119.99467 * 359.80468 * 21 20 19 23 23 C 1.38228 * 120.00577 * 359.97438 * 22 21 20 24 24 C 1.47576 * 91.01531 * 335.36057 * 5 4 3 25 25 H 1.08996 * 109.47051 * 60.00506 * 1 2 3 26 26 H 1.09006 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47692 * 299.99974 * 1 2 3 28 28 H 1.08997 * 109.47015 * 239.99705 * 2 1 3 29 29 H 1.09002 * 109.46689 * 119.99668 * 2 1 3 30 30 H 1.08997 * 112.94448 * 314.66303 * 3 2 1 31 31 H 1.09007 * 113.76625 * 252.26363 * 4 3 2 32 32 H 1.09004 * 113.77075 * 23.65739 * 4 3 2 33 33 H 0.96991 * 120.00042 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.99982 * 359.97438 * 19 18 8 35 35 H 1.08004 * 120.00109 * 180.27604 * 20 19 18 36 36 H 1.07998 * 120.00248 * 179.83110 * 21 20 19 37 37 H 1.08009 * 119.99498 * 180.02562 * 22 21 20 38 38 H 1.07993 * 120.00543 * 180.02562 * 23 22 21 39 39 H 1.09008 * 113.76528 * 270.33821 * 24 5 4 40 40 H 1.08999 * 113.76900 * 138.94466 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.1629 2.0590 1.4053 5 7 3.4425 2.6247 0.9357 6 6 4.1910 3.6885 1.2886 7 8 5.2312 3.9173 0.7084 8 6 3.7350 4.5942 2.4034 9 1 2.6534 4.5173 2.5146 10 6 4.4029 4.1825 3.6902 11 1 5.4095 3.7916 3.6750 12 6 3.7286 4.3047 4.8866 13 7 4.3347 4.0101 6.0160 14 14 1.9543 4.8887 4.9034 15 1 1.0506 3.7332 4.6723 16 1 1.6474 5.5014 6.2209 17 1 1.7545 5.8958 3.8305 18 6 4.1066 6.0179 2.0778 19 6 5.4372 6.3855 2.0044 20 6 5.7780 7.6904 1.7013 21 6 4.7882 8.6299 1.4808 22 6 3.4577 8.2635 1.5594 23 6 3.1168 6.9576 1.8579 24 6 3.5732 1.5578 -0.0756 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.5163 2.0783 -0.7139 31 1 1.4039 2.8105 1.6233 32 1 2.2739 1.3216 2.2004 33 1 3.8605 4.0964 6.8577 34 1 6.2104 5.6524 2.1808 35 1 6.8176 7.9766 1.6396 36 1 5.0545 9.6501 1.2467 37 1 2.6843 8.9975 1.3866 38 1 2.0773 6.6712 1.9189 39 1 4.0986 0.6732 0.2846 40 1 3.9404 1.9091 -1.0398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141875302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:56 Heat of formation + Delta-G solvation = -8.182695 kcal Electronic energy + Delta-G solvation = -21137.091198 eV Core-core repulsion = 18109.574080 eV Total energy + Delta-G solvation = -3027.517118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39666 -40.07724 -38.64666 -35.51291 -34.15179 -33.37959 -31.65100 -30.26639 -28.90093 -27.16728 -25.59913 -24.19093 -23.38928 -22.27388 -21.14361 -19.83697 -19.15286 -17.99504 -17.57622 -16.98247 -16.59583 -16.33443 -15.80588 -15.40130 -15.14440 -14.87245 -14.59946 -14.46840 -14.15674 -13.90785 -13.70523 -13.49067 -13.36529 -13.05289 -12.83668 -12.75009 -12.62904 -12.14450 -12.00447 -11.83046 -11.78141 -11.64230 -11.49633 -11.32107 -10.82151 -10.51997 -9.66902 -9.61309 -9.39944 -8.38999 -6.48950 0.59908 0.67319 1.30581 1.36460 1.46479 1.75940 2.08174 2.29289 2.92813 3.11169 3.35133 3.79262 3.95480 4.08771 4.19696 4.21807 4.32715 4.33243 4.39681 4.45100 4.52261 4.56330 4.59888 4.69963 4.74706 4.80098 4.88511 4.96757 5.06829 5.19844 5.23889 5.28134 5.30733 5.38221 5.41365 5.57012 5.67108 5.72893 5.93176 6.16588 6.28233 6.52069 6.78696 7.15623 7.32312 8.76758 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.006903 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.426658 B = 4055.455441 C = 4872.600401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.094 4.094 4 C 0.098 3.902 5 N -0.658 5.658 6 C 0.546 3.454 7 O -0.594 6.594 8 C 0.048 3.952 9 H 0.068 0.932 10 C -0.506 4.506 11 H 0.019 0.981 12 C 0.027 3.973 13 N -0.937 5.937 14 Si 0.928 3.072 15 H -0.245 1.245 16 H -0.287 1.287 17 H -0.228 1.228 18 C -0.072 4.072 19 C -0.101 4.101 20 C -0.138 4.138 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.143 4.143 24 C 0.098 3.902 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.271 0.729 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.586 -1.434 -12.124 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.113 4.113 4 C -0.024 4.024 5 N -0.392 5.392 6 C 0.338 3.662 7 O -0.475 6.475 8 C 0.026 3.974 9 H 0.086 0.914 10 C -0.544 4.544 11 H 0.038 0.962 12 C -0.172 4.172 13 N -0.575 5.575 14 Si 0.749 3.251 15 H -0.168 1.168 16 H -0.213 1.213 17 H -0.151 1.151 18 C -0.073 4.073 19 C -0.120 4.120 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.143 4.143 23 C -0.161 4.161 24 C -0.023 4.023 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.145 0.855 39 H 0.104 0.896 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.930 -1.173 -12.173 16.402 hybrid contribution 0.339 -0.169 0.942 1.016 sum -10.590 -1.342 -11.231 15.495 Atomic orbital electron populations 1.21750 0.94572 1.02284 1.02165 1.21466 0.96886 0.93265 1.03159 1.23120 0.93643 0.98815 0.95694 1.23549 0.83784 0.96828 0.98262 1.50240 1.25150 1.25507 1.38327 1.20956 0.82171 0.81151 0.81878 1.90526 1.25419 1.74985 1.56547 1.18108 0.97992 0.89204 0.92047 0.91384 1.20412 1.00293 1.43951 0.89729 0.96228 1.25922 1.03396 0.93727 0.94161 1.70026 1.39612 1.49060 0.98755 0.86025 0.78969 0.81070 0.79006 1.16835 1.21303 1.15103 1.20202 0.94099 0.96205 0.96835 1.20892 0.96070 0.96267 0.98737 1.21366 1.00612 0.92770 1.00854 1.21383 0.92602 1.00055 1.00886 1.21393 0.97270 0.95602 0.99997 1.21305 0.98751 0.94278 1.01767 1.23414 0.97697 0.89157 0.92067 0.92015 0.91800 0.92941 0.89942 0.91628 0.86956 0.89759 0.89644 0.91954 0.89830 0.85011 0.82940 0.82904 0.85457 0.89647 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.29 16 2 C -0.11 -1.71 5.78 30.59 0.18 -1.53 16 3 C -0.09 -1.98 3.83 -10.13 -0.04 -2.02 16 4 C 0.10 2.82 7.91 86.48 0.68 3.51 16 5 N -0.66 -25.16 3.61 -836.56 -3.02 -28.17 16 6 C 0.55 26.53 7.02 87.65 0.62 27.14 16 7 O -0.59 -32.48 15.82 -3.05 -0.05 -32.52 16 8 C 0.05 2.36 1.80 -13.03 -0.02 2.34 16 9 H 0.07 3.03 4.47 -2.39 -0.01 3.02 16 10 C -0.51 -29.63 8.24 25.60 0.21 -29.42 16 11 H 0.02 1.33 8.06 -2.91 -0.02 1.31 16 12 C 0.03 1.56 5.47 84.65 0.46 2.02 16 13 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 14 Si 0.93 40.84 26.93 68.60 1.85 42.68 16 15 H -0.24 -9.64 7.11 99.48 0.71 -8.94 16 16 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.23 -9.08 5.11 99.48 0.51 -8.57 16 18 C -0.07 -3.40 4.65 -19.86 -0.09 -3.50 16 19 C -0.10 -4.86 8.09 22.27 0.18 -4.68 16 20 C -0.14 -5.32 10.05 22.27 0.22 -5.09 16 21 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 22 C -0.12 -4.02 10.05 22.27 0.22 -3.79 16 23 C -0.14 -5.56 8.85 22.27 0.20 -5.36 16 24 C 0.10 2.80 8.40 86.48 0.73 3.53 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.08 7.88 -2.39 -0.02 1.06 16 30 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.28 7.85 -2.38 -0.02 2.26 16 32 H 0.09 2.45 7.92 -2.38 -0.02 2.43 16 33 H 0.27 15.51 8.31 -92.72 -0.77 14.74 16 34 H 0.08 4.56 7.42 -2.91 -0.02 4.54 16 35 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 36 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.13 4.40 7.10 -2.91 -0.02 4.38 16 39 H 0.09 2.29 8.10 -2.38 -0.02 2.27 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -76.65 329.85 4.38 -72.27 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.81 Total: 25.37 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 4.48 Total: -22.13 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.72 Total: -85.67 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.05 Total: -32.52 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.85 Total: 42.68 kcal Total: -76.65 4.38 -72.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141875302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.088 kcal (2) G-P(sol) polarization free energy of solvation -76.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds