Wall clock time and date at job start Mon Mar 30 2020 01:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47365 * 2 1 4 4 C 1.50702 * 109.47042 * 120.00245 * 2 1 3 5 5 C 1.33126 * 120.00061 * 120.00131 * 4 2 1 6 6 C 1.46948 * 119.99995 * 180.02562 * 5 4 2 7 7 O 1.21649 * 120.00194 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99887 * 179.97438 * 6 5 4 9 9 C 1.36827 * 119.99973 * 359.97438 * 8 6 5 10 10 H 1.07997 * 120.00001 * 322.06056 * 9 8 6 11 11 C 1.39074 * 119.99476 * 142.05715 * 9 8 6 12 12 N 1.31346 * 120.00830 * 339.73730 * 11 9 8 13 13 Si 1.86807 * 119.99618 * 159.73606 * 11 9 8 14 14 H 1.48501 * 109.46878 * 90.00115 * 13 11 9 15 15 H 1.48500 * 109.47201 * 209.99847 * 13 11 9 16 16 H 1.48502 * 109.47068 * 330.00380 * 13 11 9 17 17 C 1.46501 * 120.00100 * 179.97438 * 8 6 5 18 18 C 1.50695 * 109.47212 * 84.46041 * 17 8 6 19 19 C 1.38231 * 120.00472 * 84.75352 * 18 17 8 20 20 C 1.38233 * 120.00739 * 179.97438 * 19 18 17 21 21 C 1.38234 * 119.99524 * 0.07128 * 20 19 18 22 22 C 1.38241 * 120.00271 * 359.90659 * 21 20 19 23 23 C 1.38236 * 119.99848 * 264.73478 * 18 17 8 24 24 H 1.08999 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47073 * 299.99657 * 1 2 3 26 26 H 1.08997 * 109.47076 * 59.99652 * 1 2 3 27 27 H 1.09007 * 109.46834 * 240.00106 * 2 1 3 28 28 H 1.08997 * 109.47083 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46826 * 299.99996 * 3 2 1 30 30 H 1.08999 * 109.46745 * 60.00142 * 3 2 1 31 31 H 1.07994 * 120.00123 * 299.99629 * 4 2 1 32 32 H 1.08007 * 119.99586 * 359.97438 * 5 4 2 33 33 H 0.96998 * 120.00369 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.46825 * 324.45672 * 17 8 6 35 35 H 1.09003 * 109.47187 * 204.46284 * 17 8 6 36 36 H 1.08006 * 119.99550 * 359.69883 * 19 18 17 37 37 H 1.07991 * 120.00480 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.00078 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00271 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00316 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.7977 -1.7928 1.1083 6 6 3.2870 -2.4859 2.3081 7 8 2.9931 -2.0704 3.4130 8 7 4.0615 -3.5820 2.1844 9 6 4.3916 -4.0497 0.9416 10 1 3.6656 -4.0190 0.1427 11 6 5.6621 -4.5645 0.7074 12 7 6.6544 -4.2557 1.5107 13 14 5.9575 -5.6955 -0.7497 14 1 6.3378 -4.8862 -1.9353 15 1 7.0532 -6.6442 -0.4259 16 1 4.7164 -6.4551 -1.0464 17 6 4.5498 -4.2727 3.3805 18 6 3.4977 -5.2341 3.8701 19 6 3.4143 -6.5027 3.3275 20 6 2.4496 -7.3848 3.7770 21 6 1.5673 -6.9978 4.7682 22 6 1.6509 -5.7293 5.3113 23 6 2.6162 -4.8475 4.8623 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7715 -0.3415 2.2113 32 1 3.0583 -2.1620 0.1273 33 1 7.5406 -4.6145 1.3470 34 1 4.7649 -3.5416 4.1598 35 1 5.4591 -4.8223 3.1370 36 1 4.1001 -6.8032 2.5491 37 1 2.3842 -8.3758 3.3527 38 1 0.8133 -7.6867 5.1191 39 1 0.9618 -5.4270 6.0860 40 1 2.6817 -3.8566 5.2869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142659853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:02 Heat of formation + Delta-G solvation = -5.216594 kcal Electronic energy + Delta-G solvation = -20792.915855 eV Core-core repulsion = 17765.527356 eV Total energy + Delta-G solvation = -3027.388499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.06826 -37.97996 -36.06790 -34.78886 -31.94484 -31.12858 -30.25961 -30.13884 -26.95058 -25.97463 -24.80153 -22.50581 -21.89604 -20.65561 -19.43957 -18.80182 -16.97045 -16.33657 -15.73029 -14.91442 -14.65504 -14.47575 -14.28467 -13.99646 -13.69146 -13.53100 -13.04326 -12.82671 -12.78331 -12.17069 -12.06476 -12.05142 -11.60280 -11.46928 -11.30251 -11.04134 -10.98830 -10.78161 -10.76959 -10.52753 -10.40806 -10.29131 -10.09749 -9.21465 -8.57081 -8.56426 -8.30360 -8.05600 -7.55267 -6.45503 -4.10944 1.95642 2.02507 2.32947 3.08073 3.17060 3.20929 4.03288 4.35319 4.43728 4.84991 4.99422 5.15168 5.31585 5.42032 5.44635 5.49787 5.60512 5.76419 5.78833 5.90561 5.95930 5.97685 6.11039 6.13163 6.18302 6.21400 6.36911 6.42850 6.44527 6.58881 6.63778 6.78552 7.05600 7.07619 7.15569 7.22444 7.29574 7.38948 7.48179 7.64729 7.88620 8.31458 9.01914 9.48551 9.92501 10.57243 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011697 B = 0.007075 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.189404 B = 3956.561978 C = 5525.632878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.142 4.142 4 C -0.119 4.119 5 C -0.157 4.157 6 C 0.496 3.504 7 O -0.606 6.606 8 N -0.423 5.423 9 C -0.335 4.335 10 H 0.089 0.911 11 C 0.045 3.955 12 N -0.856 5.856 13 Si 0.908 3.092 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.267 1.267 17 C 0.150 3.850 18 C -0.080 4.080 19 C -0.098 4.098 20 C -0.133 4.133 21 C -0.135 4.135 22 C -0.133 4.133 23 C -0.100 4.100 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.271 0.729 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 0.193 -0.931 6.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 C -0.199 4.199 4 C -0.139 4.139 5 C -0.177 4.177 6 C 0.288 3.712 7 O -0.494 6.494 8 N -0.139 5.139 9 C -0.463 4.463 10 H 0.107 0.893 11 C -0.162 4.162 12 N -0.491 5.491 13 Si 0.734 3.266 14 H -0.201 1.201 15 H -0.206 1.206 16 H -0.192 1.192 17 C 0.026 3.974 18 C -0.081 4.081 19 C -0.116 4.116 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.118 4.118 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.784 0.319 -0.373 6.801 hybrid contribution 0.294 -0.712 -0.860 1.155 sum -6.490 -0.393 -1.233 6.618 Atomic orbital electron populations 1.21782 0.94907 1.01841 1.01341 1.20257 0.95589 0.96083 0.96680 1.21782 1.01399 0.95426 1.01298 1.23387 0.96618 0.95487 0.98443 1.22854 0.98805 0.96838 0.99246 1.18572 0.83090 0.80872 0.88700 1.90584 1.63331 1.67792 1.27703 1.43247 1.43758 1.21372 1.05554 1.19370 0.96985 1.41810 0.88162 0.89297 1.25391 0.94664 0.97887 0.98270 1.69909 1.00595 1.40155 1.38480 0.86229 0.78485 0.80421 0.81430 1.20113 1.20564 1.19161 1.20358 0.95424 0.93682 0.87898 1.20630 0.97745 0.94867 0.94866 1.21113 0.98262 0.93454 0.98799 1.21040 0.96526 0.99366 0.98183 1.20966 0.99605 0.96490 0.98251 1.21050 0.99105 0.94265 1.00690 1.21258 0.94506 0.99227 0.96843 0.92591 0.92680 0.92860 0.90817 0.92440 0.92887 0.92684 0.86628 0.85969 0.91853 0.91919 0.87142 0.86149 0.86936 0.87145 0.87001 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.18 37.16 0.34 -1.40 16 2 C -0.07 -0.96 3.22 -91.77 -0.30 -1.26 16 3 C -0.14 -1.78 9.18 37.16 0.34 -1.44 16 4 C -0.12 -2.17 8.35 -36.09 -0.30 -2.47 16 5 C -0.16 -3.34 8.89 -37.84 -0.34 -3.67 16 6 C 0.50 12.39 7.53 -12.73 -0.10 12.30 16 7 O -0.61 -16.05 15.17 5.23 0.08 -15.97 16 8 N -0.42 -10.65 2.51 -117.50 -0.29 -10.95 16 9 C -0.34 -8.35 8.43 -15.01 -0.13 -8.48 16 10 H 0.09 2.14 6.79 -52.49 -0.36 1.79 16 11 C 0.04 1.09 4.93 -17.45 -0.09 1.00 16 12 N -0.86 -22.00 11.50 55.50 0.64 -21.37 16 13 Si 0.91 18.87 29.60 -169.99 -5.03 13.84 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 15 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 C 0.15 3.59 5.01 -5.20 -0.03 3.57 16 18 C -0.08 -1.72 5.42 -104.63 -0.57 -2.29 16 19 C -0.10 -1.94 9.72 -39.59 -0.38 -2.33 16 20 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 23 C -0.10 -2.01 9.40 -39.58 -0.37 -2.39 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.04 7.81 -51.93 -0.41 0.63 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.12 2.23 7.49 -52.49 -0.39 1.84 16 32 H 0.12 2.51 6.34 -52.48 -0.33 2.18 16 33 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.06 1.55 7.50 -51.93 -0.39 1.17 16 35 H 0.11 2.76 5.56 -51.93 -0.29 2.47 16 36 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.12 2.59 7.61 -52.49 -0.40 2.19 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -28.12 337.99 -8.55 -36.66 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.93 Total: 9.48 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -3.10 Total: -16.80 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.34 Total: -32.31 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.08 Total: -15.97 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.12 -8.55 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142659853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.445 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds